Wall clock time and date at job start Tue Mar 31 2020 05:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.46996 * 2 1 4 4 C 1.36002 * 116.99648 * 179.97438 * 3 2 1 5 5 C 1.38506 * 120.08452 * 0.02562 * 4 3 2 6 6 C 1.38281 * 120.01713 * 180.02562 * 5 4 3 7 7 C 1.38276 * 120.18977 * 0.02562 * 6 5 4 8 8 C 1.38206 * 120.16177 * 359.97438 * 7 6 5 9 9 C 1.38764 * 119.97619 * 0.02562 * 8 7 6 10 10 N 1.39972 * 120.08957 * 179.97438 * 9 8 7 11 11 C 1.39012 * 119.99976 * 6.79333 * 10 9 8 12 12 N 1.29598 * 125.40211 * 4.57552 * 11 10 9 13 13 N 1.37764 * 115.62053 * 179.86177 * 12 11 10 14 14 C 1.29666 * 115.60142 * 0.43713 * 13 12 11 15 15 S 1.76200 * 125.41205 * 179.79687 * 14 13 12 16 16 C 1.81395 * 103.00031 * 359.97368 * 15 14 13 17 17 C 1.50697 * 109.47181 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00181 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00248 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00399 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99926 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47195 * 90.00321 * 21 19 17 23 23 H 1.48499 * 109.47577 * 210.00336 * 21 19 17 24 24 H 1.48502 * 109.47356 * 330.00491 * 21 19 17 25 25 S 1.76036 * 125.40311 * 184.88458 * 11 10 9 26 26 H 1.09002 * 109.47066 * 60.00373 * 1 2 3 27 27 H 1.09009 * 109.46874 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47632 * 299.99739 * 1 2 3 29 29 H 1.09007 * 109.47404 * 239.99965 * 2 1 3 30 30 H 1.09000 * 109.47101 * 120.00408 * 2 1 3 31 31 H 1.08000 * 119.99005 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.90932 * 179.72362 * 6 5 4 33 33 H 1.07993 * 119.91914 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.01258 * 179.97438 * 8 7 6 35 35 H 0.96993 * 119.99808 * 186.78752 * 10 9 8 36 36 H 1.09000 * 109.47027 * 299.99961 * 16 15 14 37 37 H 1.08996 * 109.47285 * 60.00308 * 16 15 14 38 38 H 0.96996 * 120.00513 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.1999 0.4282 0.0005 6 6 5.5706 0.6110 0.0016 7 6 6.1018 1.8876 0.0033 8 6 5.2654 2.9878 0.0033 9 6 3.8889 2.8123 0.0022 10 7 3.0396 3.9249 0.0028 11 6 3.5682 5.2029 -0.1380 12 7 4.8148 5.4796 -0.3598 13 7 5.1176 6.8192 -0.4679 14 6 4.1181 7.6328 -0.3252 15 16 4.2124 9.3903 -0.4085 16 6 5.9731 9.6900 -0.7251 17 6 6.2205 11.1732 -0.8239 18 1 5.4003 11.8664 -0.7082 19 6 7.4936 11.6455 -1.0630 20 7 7.7094 12.9399 -1.1497 21 14 8.9120 10.4467 -1.2638 22 1 9.0486 10.0767 -2.6955 23 1 10.1689 11.0839 -0.7953 24 1 8.6464 9.2264 -0.4604 25 16 2.6519 6.7025 -0.0357 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.7883 -0.5703 0.0005 32 1 6.2281 -0.2458 0.0061 33 1 7.1730 2.0252 0.0045 34 1 5.6830 3.9838 0.0050 35 1 2.0823 3.8042 0.1013 36 1 6.5646 9.2770 0.0920 37 1 6.2609 9.2103 -1.6606 38 1 8.6051 13.2722 -1.3175 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003456358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:59 Heat of formation + Delta-G solvation = 61.860683 kcal Electronic energy + Delta-G solvation = -22711.976749 eV Core-core repulsion = 19194.733570 eV Total energy + Delta-G solvation = -3517.243179 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.75732 -39.34225 -37.85302 -36.02104 -33.16049 -32.37149 -30.95976 -30.31419 -29.48156 -28.98226 -25.14144 -24.31414 -22.93498 -22.66614 -21.98405 -20.83098 -19.45212 -18.39436 -17.53441 -17.09833 -16.94091 -16.53511 -15.85344 -15.54857 -15.28859 -15.05762 -14.33311 -14.13855 -13.95905 -13.74621 -13.65027 -13.13110 -13.03884 -13.01258 -12.65348 -12.44785 -12.21588 -11.87204 -11.73101 -11.47191 -11.12474 -11.03286 -10.84045 -10.73940 -10.19150 -10.05478 -9.95682 -9.65447 -9.37981 -9.31449 -8.79061 -8.73768 -7.84590 -7.13034 -6.27336 -4.33250 0.47528 0.70438 1.16955 1.21268 1.39353 1.78379 2.42708 2.66836 2.90277 3.10014 3.24621 3.32930 3.37751 3.62989 4.27885 4.41763 4.46916 4.47249 4.61505 4.77377 4.78173 4.96885 5.05328 5.12550 5.21651 5.29897 5.32505 5.38387 5.57399 5.76387 6.01083 6.10029 6.36004 6.55792 6.56175 6.59296 6.72298 6.93132 7.15378 7.26341 8.10750 8.14626 8.68825 9.27200 10.83469 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.002542 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.664378 B =11013.904432 C =12369.945404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.324 6.324 4 C 0.086 3.914 5 C -0.182 4.182 6 C -0.113 4.113 7 C -0.121 4.121 8 C -0.130 4.130 9 C 0.146 3.854 10 N -0.613 5.613 11 C 0.290 3.710 12 N -0.340 5.340 13 N -0.274 5.274 14 C 0.038 3.962 15 S 0.012 5.988 16 C 0.029 3.971 17 C -0.527 4.527 18 H 0.086 0.914 19 C 0.088 3.912 20 N -0.885 5.885 21 Si 0.874 3.126 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.259 1.259 25 S 0.066 5.934 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.184 0.816 35 H 0.429 0.571 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.890 -27.299 3.293 30.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 O -0.239 6.239 4 C 0.038 3.962 5 C -0.202 4.202 6 C -0.132 4.132 7 C -0.140 4.140 8 C -0.152 4.152 9 C 0.047 3.953 10 N -0.244 5.244 11 C -0.093 4.093 12 N -0.175 5.175 13 N -0.103 5.103 14 C -0.360 4.360 15 S 0.242 5.758 16 C -0.121 4.121 17 C -0.567 4.567 18 H 0.104 0.896 19 C -0.118 4.118 20 N -0.521 5.521 21 Si 0.700 3.300 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.183 1.183 25 S 0.300 5.700 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.200 0.800 35 H 0.267 0.733 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.240 -26.284 3.297 29.614 hybrid contribution 1.376 -1.850 -0.253 2.319 sum -11.865 -28.133 3.044 30.684 Atomic orbital electron populations 1.21788 0.92700 1.02937 1.03593 1.22746 0.95755 0.81738 1.01405 1.85955 1.18665 1.29666 1.89585 1.18395 0.82634 0.92032 1.03098 1.20951 0.94159 0.97124 1.07937 1.20933 0.94153 0.97475 1.00675 1.21023 1.00097 0.91664 1.01217 1.22231 0.90270 1.03338 0.99406 1.17177 0.90386 0.82786 1.04953 1.41086 1.09374 0.98746 1.75212 1.25868 0.93375 0.90486 0.99532 1.74876 1.11125 1.07575 1.23888 1.75600 1.23290 0.93091 1.18323 1.31011 0.93262 1.07578 1.04174 1.85786 1.19844 0.84440 1.85709 1.21844 0.86775 1.02345 1.01088 1.20331 0.96343 0.87332 1.52676 0.89597 1.24764 0.98166 0.95230 0.93644 1.69841 1.22561 1.12364 1.47376 0.86837 0.81810 0.81779 0.79558 1.19633 1.20677 1.18310 1.85439 1.12628 0.94914 1.77005 0.91462 0.90327 0.91472 0.92026 0.92038 0.85302 0.85844 0.85423 0.80010 0.73263 0.92827 0.93306 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.28 37.16 0.38 -0.32 16 2 C 0.06 0.36 5.46 37.16 0.20 0.56 16 3 O -0.32 -3.06 9.40 -19.75 -0.19 -3.24 16 4 C 0.09 0.94 6.70 -39.07 -0.26 0.68 16 5 C -0.18 -1.70 9.04 -39.47 -0.36 -2.06 16 6 C -0.11 -1.07 10.04 -39.55 -0.40 -1.47 16 7 C -0.12 -1.37 10.04 -39.58 -0.40 -1.77 16 8 C -0.13 -1.78 9.11 -39.40 -0.36 -2.14 16 9 C 0.15 1.87 6.64 -83.54 -0.55 1.32 16 10 N -0.61 -7.65 5.57 -10.23 -0.06 -7.70 16 11 C 0.29 4.36 8.29 -87.36 -0.72 3.64 16 12 N -0.34 -6.12 8.30 30.86 0.26 -5.86 16 13 N -0.27 -5.54 11.62 31.12 0.36 -5.18 16 14 C 0.04 0.71 7.82 51.85 0.41 1.12 16 15 S 0.01 0.25 22.08 -107.50 -2.37 -2.13 16 16 C 0.03 0.69 4.37 36.00 0.16 0.85 16 17 C -0.53 -14.43 9.68 -34.44 -0.33 -14.76 16 18 H 0.09 2.51 7.96 -52.48 -0.42 2.09 16 19 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 20 N -0.88 -25.99 13.96 55.43 0.77 -25.22 16 21 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 25 S 0.07 0.95 23.39 -107.50 -2.51 -1.57 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 32 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.18 2.91 4.61 -61.41 -0.28 2.63 16 35 H 0.43 4.31 8.21 -40.82 -0.34 3.98 16 36 H 0.05 1.30 7.20 -51.92 -0.37 0.93 16 37 H 0.05 1.17 7.57 -51.93 -0.39 0.78 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -30.89 351.50 -9.66 -40.55 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.21 Total: 0.68 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -2.33 Total: -11.98 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 1.33 Total: -43.96 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -0.19 Total: -3.24 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -4.89 Total: -3.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.89 -9.66 -40.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003456358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.411 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds