Wall clock time and date at job start Tue Mar 31 2020 05:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86793 * 120.00355 * 2 1 4 4 H 1.48503 * 109.47395 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47697 * 300.00500 * 3 2 1 6 6 H 1.48500 * 109.47043 * 60.00634 * 3 2 1 7 7 C 1.38903 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99768 * 160.12441 * 7 2 1 9 9 N 1.37511 * 119.99942 * 340.12113 * 7 2 1 10 10 C 1.33793 * 124.17763 * 147.05986 * 9 7 2 11 11 O 1.21527 * 123.76879 * 0.06129 * 10 9 7 12 12 N 1.34519 * 112.45768 * 180.02562 * 10 9 7 13 13 C 1.47310 * 106.62356 * 359.97438 * 12 10 9 14 14 C 1.53001 * 110.73685 * 241.41440 * 13 12 10 15 15 C 1.50701 * 109.46950 * 57.07693 * 14 13 12 16 16 C 1.38233 * 119.99743 * 269.72672 * 15 14 13 17 17 C 1.38239 * 119.99733 * 179.74410 * 16 15 14 18 18 C 1.38241 * 119.99550 * 0.52978 * 17 16 15 19 19 C 1.38233 * 120.00513 * 359.74853 * 18 17 16 20 20 C 1.38233 * 119.99862 * 90.00236 * 15 14 13 21 21 C 1.50699 * 110.59795 * 118.52524 * 13 12 10 22 22 C 1.38238 * 120.00025 * 335.13393 * 21 13 12 23 23 C 1.38238 * 119.99826 * 179.97438 * 22 21 13 24 24 C 1.38234 * 120.00003 * 359.97438 * 23 22 21 25 25 C 1.38232 * 119.99933 * 0.27881 * 24 23 22 26 26 C 1.38230 * 120.00327 * 359.51056 * 25 24 23 27 27 C 1.34769 * 124.17852 * 327.10305 * 9 7 2 28 28 O 1.21239 * 127.15690 * 359.93340 * 27 9 7 29 29 H 0.97006 * 119.99552 * 359.97438 * 1 2 3 30 30 H 0.97001 * 126.68919 * 180.02562 * 12 10 9 31 31 H 1.08994 * 109.47084 * 177.08148 * 14 13 12 32 32 H 1.08998 * 109.46751 * 297.07893 * 14 13 12 33 33 H 1.07993 * 120.00451 * 0.02562 * 16 15 14 34 34 H 1.08001 * 120.00486 * 180.29747 * 17 16 15 35 35 H 1.08000 * 119.99552 * 179.76480 * 18 17 16 36 36 H 1.07992 * 120.00379 * 179.97438 * 19 18 17 37 37 H 1.08005 * 120.00082 * 359.97438 * 20 15 14 38 38 H 1.07996 * 120.00093 * 359.97222 * 22 21 13 39 39 H 1.07995 * 119.99633 * 179.97438 * 23 22 21 40 40 H 1.08006 * 119.99838 * 179.97438 * 24 23 22 41 41 H 1.08006 * 119.99972 * 179.71970 * 25 24 23 42 42 H 1.07997 * 120.00442 * 180.27558 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 3.7079 1.3462 -0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8893 2.3963 1.2126 7 6 2.0083 -1.2030 -0.0005 8 1 3.0400 -1.2307 -0.3185 9 7 1.3821 -2.3585 0.4039 10 6 1.6431 -3.5704 -0.0993 11 8 2.4655 -3.7777 -0.9697 12 7 0.8940 -4.5339 0.4665 13 6 0.0369 -3.8702 1.4640 14 6 0.3272 -4.4036 2.8683 15 6 1.7868 -4.2078 3.1882 16 6 2.7007 -5.1980 2.8801 17 6 4.0404 -5.0162 3.1687 18 6 4.4643 -3.8486 3.7755 19 6 3.5496 -2.8608 4.0889 20 6 2.2108 -3.0403 3.7950 21 6 -1.4184 -4.0543 1.1189 22 6 -1.7941 -4.2881 -0.1907 23 6 -3.1291 -4.4575 -0.5071 24 6 -4.0883 -4.3936 0.4862 25 6 -3.7131 -4.1546 1.7950 26 6 -2.3778 -3.9896 2.1121 27 6 0.4291 -2.4100 1.3554 28 8 -0.0200 -1.4818 1.9930 29 1 -0.4850 0.8401 0.0004 30 1 0.9147 -5.4812 0.2587 31 1 -0.2797 -3.8633 3.5948 32 1 0.0852 -5.4655 2.9108 33 1 2.3689 -6.1117 2.4097 34 1 4.7552 -5.7877 2.9236 35 1 5.5104 -3.7082 4.0044 36 1 3.8807 -1.9489 4.5632 37 1 1.4960 -2.2683 4.0394 38 1 -1.0446 -4.3384 -0.9667 39 1 -3.4225 -4.6397 -1.5304 40 1 -5.1314 -4.5256 0.2389 41 1 -4.4630 -4.1002 2.5704 42 1 -2.0843 -3.8073 3.1353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003537430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:47 Heat of formation + Delta-G solvation = 24.393640 kcal Electronic energy + Delta-G solvation = -30055.050949 eV Core-core repulsion = 26159.245260 eV Total energy + Delta-G solvation = -3895.805689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61658 -38.81219 -38.69448 -37.00651 -35.41182 -34.21735 -32.43865 -31.50689 -30.89797 -30.55262 -30.42411 -27.66153 -25.75786 -24.28880 -22.36077 -22.29924 -22.00052 -21.02677 -20.78870 -19.63461 -17.56169 -17.13053 -16.42126 -16.17110 -15.61725 -15.40847 -14.96078 -14.82980 -14.74512 -14.52675 -14.15147 -13.96985 -13.71538 -13.39824 -13.12677 -13.11087 -13.01425 -12.50892 -12.40437 -12.29690 -11.97686 -11.83176 -11.62181 -11.08660 -11.04215 -10.87203 -10.75770 -10.67190 -10.60384 -10.35394 -9.66997 -9.27582 -8.98293 -8.79525 -8.65271 -8.54434 -8.47015 -8.22356 -7.89002 -6.39158 -4.14045 1.52220 1.66770 1.67369 1.76312 3.01219 3.21050 3.27212 3.32715 3.56836 4.00788 4.08609 4.16441 4.45610 4.56640 4.74175 5.01209 5.07631 5.15480 5.20350 5.23115 5.29860 5.31836 5.39609 5.45673 5.48607 5.66416 5.73857 5.80519 5.86212 5.93903 5.99878 6.16979 6.27968 6.32812 6.38477 6.61922 6.68061 6.73433 6.76867 6.84844 6.86709 6.94994 7.22562 7.33830 7.47497 7.64220 8.00294 8.23720 8.77356 9.07567 9.23227 9.84005 10.69857 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.008717 B = 0.006972 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3211.492228 B = 4015.131098 C = 5796.020302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.059 3.941 3 Si 0.924 3.076 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.348 4.348 8 H 0.101 0.899 9 N -0.401 5.401 10 C 0.681 3.319 11 O -0.571 6.571 12 N -0.735 5.735 13 C 0.163 3.837 14 C -0.068 4.068 15 C -0.086 4.086 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.122 4.122 19 C -0.115 4.115 20 C -0.099 4.099 21 C -0.072 4.072 22 C -0.093 4.093 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.099 4.099 27 C 0.513 3.487 28 O -0.457 6.457 29 H 0.271 0.729 30 H 0.421 0.579 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 -10.472 7.423 13.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.153 4.153 3 Si 0.750 3.250 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.474 4.474 8 H 0.119 0.881 9 N -0.132 5.132 10 C 0.385 3.615 11 O -0.448 6.448 12 N -0.399 5.399 13 C 0.071 3.929 14 C -0.107 4.107 15 C -0.086 4.086 16 C -0.122 4.122 17 C -0.142 4.142 18 C -0.140 4.140 19 C -0.133 4.133 20 C -0.117 4.117 21 C -0.073 4.073 22 C -0.111 4.111 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.118 4.118 27 C 0.298 3.702 28 O -0.328 6.328 29 H 0.081 0.919 30 H 0.262 0.738 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.259 -9.800 7.275 12.633 hybrid contribution 0.238 0.450 -0.364 0.626 sum -3.021 -9.350 6.911 12.013 Atomic orbital electron populations 1.69939 1.06334 1.28247 1.41093 1.25286 0.95141 0.99885 0.94965 0.85933 0.80027 0.81209 0.77858 1.18971 1.20633 1.20280 1.19336 0.96486 0.82182 1.49363 0.88108 1.41700 1.34587 1.06480 1.30420 1.16362 0.81866 0.82035 0.81250 1.90811 1.37334 1.83550 1.33153 1.45543 1.42439 1.09417 1.42484 1.20217 0.88388 0.94594 0.89706 1.20777 0.93464 1.02106 0.94314 1.19668 0.94962 0.94856 0.99108 1.20901 0.93107 0.98741 0.99477 1.21027 0.95667 0.97822 0.99665 1.21076 0.99172 0.94195 0.99545 1.21081 0.93290 0.98673 1.00300 1.21162 0.96354 0.96491 0.97655 1.19567 0.93064 1.00519 0.94170 1.21004 0.96321 0.97984 0.95803 1.21070 0.92867 1.00792 0.99149 1.21099 0.99070 1.00571 0.93260 1.21035 0.95710 1.00820 0.96524 1.20985 0.92617 0.99061 0.99121 1.19711 0.81978 0.87478 0.81002 1.90585 1.55525 1.41124 1.45522 0.91868 0.73761 0.88973 0.89777 0.86606 0.86547 0.86576 0.86295 0.85729 0.85951 0.86242 0.86426 0.86161 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.66 11.19 55.49 0.62 -23.04 16 2 C 0.06 1.62 4.82 -17.50 -0.08 1.54 16 3 Si 0.92 21.40 29.60 -169.99 -5.03 16.37 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.35 -9.90 9.46 -14.76 -0.14 -10.04 16 8 H 0.10 2.91 7.91 -52.49 -0.41 2.49 16 9 N -0.40 -10.50 2.69 -65.56 -0.18 -10.68 16 10 C 0.68 16.49 8.49 -88.03 -0.75 15.75 16 11 O -0.57 -15.42 17.62 5.34 0.09 -15.33 16 12 N -0.73 -13.63 3.87 -54.03 -0.21 -13.84 16 13 C 0.16 3.02 0.95 -133.24 -0.13 2.89 16 14 C -0.07 -1.03 4.17 -27.88 -0.12 -1.15 16 15 C -0.09 -1.41 4.37 -104.63 -0.46 -1.86 16 16 C -0.10 -1.57 9.21 -39.58 -0.36 -1.94 16 17 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 18 C -0.12 -1.81 10.05 -39.58 -0.40 -2.20 16 19 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 20 C -0.10 -1.73 8.71 -39.58 -0.34 -2.07 16 21 C -0.07 -1.25 4.93 -104.62 -0.52 -1.76 16 22 C -0.09 -1.60 9.35 -39.58 -0.37 -1.97 16 23 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 24 C -0.12 -1.61 10.05 -39.59 -0.40 -2.01 16 25 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 26 C -0.10 -1.52 9.18 -39.58 -0.36 -1.88 16 27 C 0.51 12.35 4.68 -10.55 -0.05 12.30 16 28 O -0.46 -12.19 15.18 5.59 0.08 -12.11 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.42 6.37 8.96 -40.82 -0.37 6.01 16 31 H 0.09 1.33 6.55 -51.93 -0.34 0.99 16 32 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 35 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.12 2.28 7.83 -52.48 -0.41 1.87 16 38 H 0.12 2.23 7.31 -52.49 -0.38 1.85 16 39 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 42 H 0.13 1.71 6.32 -52.49 -0.33 1.37 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -34.52 357.74 -10.05 -44.57 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -4.76 Total: 11.76 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -6.06 Total: -3.10 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.24 Total: -47.56 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: 0.18 Total: -27.44 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.52 -10.05 -44.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003537430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.962 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds