Wall clock time and date at job start Tue Mar 31 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39723 * 120.19204 * 318.64190 * 3 2 1 5 5 C 1.37822 * 119.89837 * 180.02562 * 4 3 2 6 6 C 1.38519 * 120.29937 * 359.96997 * 5 4 3 7 7 C 1.38108 * 120.38678 * 0.03057 * 6 5 4 8 8 C 1.38638 * 120.09650 * 359.97438 * 7 6 5 9 9 O 1.35709 * 120.15161 * 180.02562 * 8 7 6 10 10 C 1.42903 * 116.99572 * 359.95566 * 9 8 7 11 11 C 1.50703 * 109.46563 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00216 * 5.13425 * 11 10 9 13 13 N 1.34779 * 119.99441 * 185.12844 * 11 10 9 14 14 C 1.46503 * 119.99657 * 185.22115 * 13 11 10 15 15 C 1.50694 * 109.47169 * 90.00622 * 14 13 11 16 16 H 1.08008 * 120.00114 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99922 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99684 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00311 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47157 * 90.00179 * 19 17 15 21 21 H 1.48498 * 109.47370 * 210.00446 * 19 17 15 22 22 H 1.48501 * 109.47029 * 330.00574 * 19 17 15 23 23 C 1.39923 * 120.00218 * 5.22646 * 13 11 10 24 24 C 1.38874 * 120.07090 * 292.46492 * 23 13 11 25 25 C 1.38110 * 119.93059 * 179.79152 * 24 23 13 26 26 C 1.38285 * 120.06858 * 0.48894 * 25 24 23 27 27 C 1.38280 * 120.14104 * 359.74280 * 26 25 24 28 28 C 1.38109 * 120.07185 * 0.02562 * 27 26 25 29 29 H 1.07993 * 120.05156 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.85170 * 180.02562 * 5 4 3 31 31 H 1.07994 * 119.80521 * 179.74683 * 6 5 4 32 32 H 1.08004 * 119.95132 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.46959 * 299.99957 * 10 9 8 34 34 H 1.08998 * 109.47274 * 60.00050 * 10 9 8 35 35 H 1.09007 * 109.46927 * 210.00463 * 14 13 11 36 36 H 1.08999 * 109.46987 * 329.99971 * 14 13 11 37 37 H 0.97003 * 119.99772 * 179.97438 * 18 17 15 38 38 H 1.08008 * 120.03308 * 0.02562 * 24 23 13 39 39 H 1.08000 * 119.96258 * 180.23224 * 25 24 23 40 40 H 1.08002 * 119.92842 * 179.72689 * 26 25 24 41 41 H 1.07998 * 119.96235 * 180.02562 * 27 26 25 42 42 H 1.07998 * 120.03788 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2711 -0.9055 0.7980 5 6 4.6493 -0.8993 0.7937 6 6 5.3416 0.0014 0.0011 7 6 4.6589 0.9023 -0.7924 8 6 3.2725 0.9103 -0.8005 9 8 2.6005 1.7948 -1.5801 10 6 3.3856 2.6919 -2.3682 11 6 2.4742 3.5916 -3.1625 12 8 1.2741 3.5401 -2.9946 13 7 2.9928 4.4537 -4.0595 14 6 2.1197 5.4074 -4.7483 15 6 2.0378 6.6818 -3.9483 16 1 2.5815 6.7723 -3.0194 17 6 1.2681 7.7321 -4.4017 18 7 1.1971 8.8445 -3.7037 19 14 0.3274 7.5756 -6.0078 20 1 -1.0254 7.0258 -5.7376 21 1 0.2008 8.9134 -6.6398 22 1 1.0587 6.6629 -6.9229 23 6 4.3649 4.4376 -4.3328 24 6 5.2734 4.8280 -3.3576 25 6 6.6273 4.8070 -3.6292 26 6 7.0783 4.4074 -4.8739 27 6 6.1760 4.0227 -5.8486 28 6 4.8210 4.0369 -5.5818 29 1 2.7354 -1.6098 1.4172 30 1 5.1920 -1.6003 1.4105 31 1 6.4215 0.0020 0.0070 32 1 5.2058 1.6017 -1.4074 33 1 4.0133 3.2963 -1.7136 34 1 4.0156 2.1204 -3.0498 35 1 2.5261 5.6240 -5.7363 36 1 1.1230 4.9785 -4.8515 37 1 0.6559 9.5836 -4.0229 38 1 4.9215 5.1441 -2.3866 39 1 7.3344 5.1069 -2.8699 40 1 8.1373 4.3960 -5.0852 41 1 6.5314 3.7107 -6.8196 42 1 4.1169 3.7367 -6.3437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003564734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:30 Heat of formation + Delta-G solvation = 28.654190 kcal Electronic energy + Delta-G solvation = -27714.553207 eV Core-core repulsion = 23818.932270 eV Total energy + Delta-G solvation = -3895.620938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78695 -39.95169 -38.43976 -37.50736 -36.30752 -35.09240 -32.72849 -31.75584 -30.97648 -30.61100 -29.84637 -28.94559 -27.11197 -24.15652 -23.24568 -22.69266 -22.37000 -21.87466 -19.66993 -19.17758 -17.92258 -17.44562 -17.07222 -16.44158 -16.21605 -16.03234 -15.60803 -15.22971 -15.04758 -14.61738 -14.46145 -14.24756 -14.05754 -13.67147 -13.33775 -13.29678 -13.18718 -12.84724 -12.73440 -12.58823 -12.46138 -12.38292 -11.92426 -11.86205 -11.53256 -11.47186 -11.33147 -11.09139 -10.97098 -10.63506 -10.29624 -9.67094 -9.62208 -9.34707 -8.88489 -8.79258 -8.65175 -8.55208 -7.90719 -6.16286 -4.16577 0.54540 1.04000 1.34611 1.45137 2.53168 2.75388 2.86247 2.92744 3.24686 3.29969 3.32805 3.66192 3.69241 3.82282 3.83017 4.32886 4.42288 4.53787 4.67999 4.77491 4.94180 4.95866 4.98889 5.01596 5.08962 5.13724 5.17062 5.19190 5.44269 5.49507 5.63107 5.80617 5.84079 5.89062 6.07109 6.07396 6.29299 6.39598 6.52237 6.55485 6.58427 6.78113 6.88789 6.99248 7.13158 7.47541 7.58142 7.95082 8.33937 8.59724 8.84764 9.42060 10.96719 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003774 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.833096 B = 7417.226645 C = 9363.335652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.258 3.742 3 C -0.061 4.061 4 C -0.032 4.032 5 C -0.163 4.163 6 C -0.048 4.048 7 C -0.212 4.212 8 C 0.181 3.819 9 O -0.281 6.281 10 C 0.041 3.959 11 C 0.519 3.481 12 O -0.500 6.500 13 N -0.551 5.551 14 C 0.219 3.781 15 C -0.534 4.534 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.893 5.893 19 Si 0.874 3.126 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.265 1.265 23 C 0.152 3.848 24 C -0.125 4.125 25 C -0.107 4.107 26 C -0.130 4.130 27 C -0.108 4.108 28 C -0.124 4.124 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.266 0.734 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.513 -17.950 3.373 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.058 4.058 3 C -0.065 4.065 4 C -0.053 4.053 5 C -0.182 4.182 6 C -0.066 4.066 7 C -0.231 4.231 8 C 0.131 3.869 9 O -0.192 6.192 10 C -0.038 4.038 11 C 0.304 3.696 12 O -0.373 6.373 13 N -0.280 5.280 14 C 0.101 3.899 15 C -0.572 4.572 16 H 0.094 0.906 17 C -0.127 4.127 18 N -0.530 5.530 19 Si 0.700 3.300 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.190 1.190 23 C 0.060 3.940 24 C -0.144 4.144 25 C -0.126 4.126 26 C -0.148 4.148 27 C -0.127 4.127 28 C -0.144 4.144 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.704 -17.730 3.427 23.287 hybrid contribution 0.211 0.494 -0.908 1.055 sum 14.915 -17.236 2.519 22.932 Atomic orbital electron populations 1.81226 1.11955 1.07624 1.07843 1.25295 0.92322 0.94064 0.94075 1.15317 0.84852 1.01759 1.04585 1.21025 0.94273 0.95110 0.94886 1.20981 0.93480 1.01478 1.02235 1.21186 1.00402 0.92398 0.92653 1.21293 0.92092 1.04248 1.05466 1.19068 0.90645 0.88073 0.89078 1.86185 1.34719 1.44317 1.53952 1.22800 0.93951 0.92159 0.94861 1.19673 0.88684 0.80849 0.80344 1.90763 1.14920 1.67497 1.64132 1.45496 1.05729 1.35304 1.41507 1.19868 0.89904 0.87610 0.92550 1.21221 1.30553 0.96403 1.09066 0.90566 1.24804 0.95784 0.94962 0.97119 1.69881 1.40090 1.04510 1.38556 0.86886 0.81299 0.77807 0.83977 1.19703 1.20837 1.19010 1.17775 0.83723 0.98232 0.94251 1.21434 0.93134 0.99473 1.00400 1.21013 0.94893 0.99514 0.97152 1.21117 0.99497 1.00547 0.93629 1.20987 0.92540 0.99939 0.99219 1.21301 0.96050 1.00351 0.96649 0.84338 0.84815 0.84872 0.84208 0.88358 0.88898 0.94579 0.93842 0.92385 0.85562 0.85781 0.86134 0.85896 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.27 18.54 41.84 0.78 -6.50 16 2 C 0.26 3.88 14.87 -22.47 -0.33 3.55 16 3 C -0.06 -0.71 5.75 -106.69 -0.61 -1.33 16 4 C -0.03 -0.25 9.76 -39.18 -0.38 -0.64 16 5 C -0.16 -0.99 10.02 -39.63 -0.40 -1.39 16 6 C -0.05 -0.30 10.03 -39.53 -0.40 -0.70 16 7 C -0.21 -1.86 9.03 -39.48 -0.36 -2.22 16 8 C 0.18 2.22 6.69 -38.71 -0.26 1.96 16 9 O -0.28 -4.52 9.11 -38.69 -0.35 -4.87 16 10 C 0.04 0.59 3.73 36.01 0.13 0.73 16 11 C 0.52 10.52 7.65 -10.98 -0.08 10.44 16 12 O -0.50 -12.59 16.06 -14.30 -0.23 -12.82 16 13 N -0.55 -11.10 2.51 -114.73 -0.29 -11.38 16 14 C 0.22 5.28 4.22 -5.20 -0.02 5.26 16 15 C -0.53 -15.12 9.94 -34.44 -0.34 -15.47 16 16 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -27.28 13.96 55.43 0.77 -26.51 16 19 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 23 C 0.15 2.46 4.43 -83.69 -0.37 2.09 16 24 C -0.12 -1.76 8.45 -39.39 -0.33 -2.09 16 25 C -0.11 -1.18 10.04 -39.61 -0.40 -1.58 16 26 C -0.13 -1.32 10.04 -39.55 -0.40 -1.72 16 27 C -0.11 -1.20 10.04 -39.61 -0.40 -1.59 16 28 C -0.12 -1.72 9.66 -39.39 -0.38 -2.10 16 29 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 31 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 32 H 0.14 1.02 6.30 -52.48 -0.33 0.69 16 33 H 0.10 1.21 6.41 -51.93 -0.33 0.88 16 34 H 0.09 1.07 7.39 -51.93 -0.38 0.69 16 35 H 0.04 0.83 6.90 -51.93 -0.36 0.47 16 36 H 0.04 1.11 6.78 -51.93 -0.35 0.76 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 38 H 0.13 1.81 7.55 -52.48 -0.40 1.41 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -36.78 372.33 -8.51 -45.29 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.70 Total: -0.88 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -5.43 Total: -4.68 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 1.26 Total: -44.39 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.58 Total: -17.69 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.78 -8.51 -45.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003564734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.945 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds