Wall clock time and date at job start Tue Mar 31 2020 05:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35953 * 116.99748 * 2 1 4 4 C 1.38196 * 120.01226 * 359.72146 * 3 2 1 5 5 C 1.39743 * 119.85767 * 179.80261 * 4 3 2 6 6 C 1.47380 * 120.06626 * 180.22951 * 5 4 3 7 7 N 1.29800 * 119.99849 * 180.24743 * 6 5 4 8 8 N 1.40100 * 119.99401 * 179.97438 * 7 6 5 9 9 C 1.34783 * 119.99880 * 179.97438 * 8 7 6 10 10 O 1.21522 * 120.00366 * 179.97438 * 9 8 7 11 11 O 1.34685 * 119.99783 * 0.02562 * 9 8 7 12 12 C 1.45192 * 116.99653 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47298 * 60.00295 * 12 11 9 14 14 C 1.53008 * 109.46771 * 179.97438 * 12 11 9 15 15 C 1.52995 * 109.47624 * 299.99794 * 12 11 9 16 16 C 1.39822 * 119.87259 * 0.47215 * 5 4 3 17 17 C 1.37772 * 120.01373 * 359.78185 * 16 5 4 18 18 C 1.38965 * 120.14454 * 359.97438 * 17 16 5 19 19 O 1.35699 * 119.93405 * 180.02562 * 18 17 16 20 20 C 1.34787 * 117.00366 * 354.37511 * 19 18 17 21 21 H 1.08002 * 119.99422 * 5.06916 * 20 19 18 22 22 C 1.38613 * 120.00280 * 185.06625 * 20 19 18 23 23 N 1.31580 * 120.00169 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00142 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46802 * 60.00307 * 24 22 20 26 26 H 1.48497 * 109.47066 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47237 * 300.00305 * 24 22 20 28 28 H 1.08992 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47269 * 59.99988 * 1 2 3 30 30 H 1.09001 * 109.46821 * 300.00488 * 1 2 3 31 31 H 1.08000 * 120.06477 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.99714 * 0.24881 * 6 5 4 33 33 H 0.97000 * 120.00354 * 0.02562 * 8 7 6 34 34 H 1.08994 * 109.46788 * 59.99472 * 13 12 11 35 35 H 1.08998 * 109.46816 * 179.97438 * 13 12 11 36 36 H 1.08995 * 109.46916 * 299.99400 * 13 12 11 37 37 H 1.09006 * 109.46860 * 60.00473 * 14 12 11 38 38 H 1.09007 * 109.46686 * 179.97438 * 14 12 11 39 39 H 1.08990 * 109.47216 * 299.99921 * 14 12 11 40 40 H 1.09002 * 109.47215 * 59.99662 * 15 12 11 41 41 H 1.08998 * 109.47688 * 180.02562 * 15 12 11 42 42 H 1.09006 * 109.47351 * 300.00349 * 15 12 11 43 43 H 1.07997 * 119.99113 * 179.75052 * 16 5 4 44 44 H 1.07993 * 119.92758 * 179.97438 * 17 16 5 45 45 H 0.96996 * 120.00330 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2937 2.3705 -0.0058 5 6 1.9314 3.6139 -0.0016 6 6 1.1334 4.8530 -0.0027 7 7 1.7271 6.0073 -0.0036 8 7 0.9684 7.1851 -0.0052 9 6 1.5848 8.3837 -0.0057 10 8 0.9269 9.4054 -0.0075 11 8 2.9301 8.4491 -0.0052 12 6 3.5256 9.7733 -0.0063 13 6 3.0765 10.5356 1.2420 14 6 5.0504 9.6467 -0.0049 15 6 3.0776 10.5330 -1.2565 16 6 3.3280 3.6803 -0.0016 17 6 4.0731 2.5214 -0.0011 18 6 3.4396 1.2846 -0.0001 19 8 4.1776 0.1458 0.0009 20 6 5.5133 0.2821 -0.1168 21 1 5.9570 1.2667 -0.1239 22 6 6.3175 -0.8414 -0.2286 23 7 5.7769 -2.0409 -0.2204 24 14 8.1687 -0.6524 -0.3925 25 1 8.7017 0.0530 0.8007 26 1 8.7960 -1.9944 -0.4960 27 1 8.4799 0.1345 -1.6128 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 0.2151 2.3154 -0.0099 32 1 0.0547 4.8005 -0.0026 33 1 -0.0004 7.1380 -0.0052 34 1 3.3957 9.9943 2.1326 35 1 3.5239 11.5295 1.2413 36 1 1.9903 10.6258 1.2414 37 1 5.3707 9.1035 -0.8940 38 1 5.4975 10.6409 -0.0062 39 1 5.3692 9.1058 0.8860 40 1 1.9913 10.6231 -1.2571 41 1 3.5250 11.5269 -1.2576 42 1 3.3976 9.9900 -2.1458 43 1 3.8229 4.6403 -0.0024 44 1 5.1517 2.5743 -0.0014 45 1 6.3396 -2.8271 -0.2990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003574800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:35 Heat of formation + Delta-G solvation = -74.628447 kcal Electronic energy + Delta-G solvation = -28247.845668 eV Core-core repulsion = 24040.437140 eV Total energy + Delta-G solvation = -4207.408528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79586 -39.70439 -37.77886 -37.66067 -36.83948 -35.73047 -34.05360 -32.58956 -31.83611 -29.69555 -28.83568 -27.55290 -27.54470 -26.65770 -25.55295 -23.41088 -22.82378 -21.70133 -20.51608 -19.73215 -18.25007 -18.07918 -17.72336 -17.23276 -16.34644 -16.27684 -15.76305 -15.38012 -15.22784 -14.86014 -14.65394 -14.56278 -14.01917 -13.92361 -13.68853 -13.59197 -13.44597 -13.05575 -12.61453 -12.43562 -12.32158 -12.04440 -12.03524 -11.79815 -11.73092 -11.61062 -11.51493 -11.44394 -11.16466 -11.01220 -10.82625 -10.58819 -10.53505 -10.47690 -10.31367 -10.13321 -9.55031 -9.22469 -8.79228 -7.98689 -6.95866 -6.58900 -4.11426 1.23875 2.02663 2.13529 2.54101 3.01869 3.07995 3.11951 3.14598 3.34676 3.85891 3.93344 4.46311 4.55588 4.61207 4.74218 4.79370 4.92986 5.03380 5.06299 5.31606 5.36109 5.38614 5.49689 5.50373 5.54755 5.59131 5.67459 5.68505 5.73909 5.80580 5.84968 5.89568 6.09348 6.09999 6.14366 6.23678 6.29533 6.46421 6.77286 6.88139 7.03492 7.12183 7.21185 7.48272 7.68068 7.81512 8.06748 8.45618 8.84474 9.52162 10.56872 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.002600 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.485428 B =10766.919539 C =12995.962923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.051 3.949 4 C -0.133 4.133 5 C -0.146 4.146 6 C 0.159 3.841 7 N -0.271 5.271 8 N -0.561 5.561 9 C 0.683 3.317 10 O -0.572 6.572 11 O -0.334 6.334 12 C 0.130 3.870 13 C -0.183 4.183 14 C -0.140 4.140 15 C -0.183 4.183 16 C -0.038 4.038 17 C -0.227 4.227 18 C 0.151 3.849 19 O -0.149 6.149 20 C -0.390 4.390 21 H 0.098 0.902 22 C 0.042 3.958 23 N -0.847 5.847 24 Si 0.944 3.056 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.267 1.267 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.402 0.598 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.124 0.876 44 H 0.138 0.862 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 16.682 0.245 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.216 6.216 3 C 0.006 3.994 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.048 4.048 7 N -0.080 5.080 8 N -0.311 5.311 9 C 0.438 3.562 10 O -0.460 6.460 11 O -0.247 6.247 12 C 0.093 3.907 13 C -0.240 4.240 14 C -0.197 4.197 15 C -0.240 4.240 16 C -0.059 4.059 17 C -0.247 4.247 18 C 0.094 3.906 19 O -0.049 6.049 20 C -0.466 4.466 21 H 0.115 0.885 22 C -0.165 4.165 23 N -0.479 5.479 24 Si 0.768 3.232 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.192 1.192 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.126 0.874 33 H 0.245 0.755 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.142 0.858 44 H 0.155 0.845 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.979 17.026 0.246 18.047 hybrid contribution -0.764 0.005 -0.075 0.768 sum -6.743 17.030 0.171 18.317 Atomic orbital electron populations 1.22907 0.80293 1.03061 1.00295 1.86252 1.19467 1.26142 1.89762 1.17958 0.89337 0.84463 1.07625 1.20655 0.98430 0.90601 1.05752 1.17427 0.92489 0.88779 1.16354 1.24374 0.97159 0.90660 0.92645 1.75082 1.22074 0.92214 1.18662 1.45762 1.07505 1.02133 1.75728 1.17485 0.81741 0.82052 0.74882 1.90959 1.66515 1.31776 1.56771 1.86503 1.18795 1.33871 1.85538 1.22134 0.93266 0.79015 0.96316 1.22518 1.04516 1.00303 0.96706 1.21843 0.91163 1.02886 1.03854 1.22518 1.04524 1.00316 0.96687 1.20942 0.92282 0.97817 0.94858 1.20876 1.00839 0.90650 1.12302 1.18878 0.88282 0.87707 0.95733 1.84014 1.19705 1.25818 1.75359 1.21459 0.78386 0.95086 1.51629 0.88516 1.25387 1.00850 0.94161 0.96105 1.70062 1.36696 0.97792 1.43382 0.85726 0.79854 0.78152 0.79466 1.19222 1.20152 1.19219 0.89037 0.93484 0.93505 0.85902 0.87371 0.75500 0.92024 0.91174 0.89649 0.91240 0.90304 0.91237 0.89643 0.91174 0.92021 0.85811 0.84464 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.30 -6.13 10.28 -34.21 -0.35 -6.48 16 3 C 0.05 1.05 6.70 -39.11 -0.26 0.79 16 4 C -0.13 -2.17 8.77 -39.03 -0.34 -2.51 16 5 C -0.15 -2.37 5.87 -105.02 -0.62 -2.99 16 6 C 0.16 2.12 10.74 -14.69 -0.16 1.97 16 7 N -0.27 -3.96 10.17 32.14 0.33 -3.63 16 8 N -0.56 -7.36 6.27 27.61 0.17 -7.18 16 9 C 0.68 9.85 8.11 54.06 0.44 10.29 16 10 O -0.57 -8.60 12.72 -19.29 -0.25 -8.85 16 11 O -0.33 -4.77 9.50 -40.45 -0.38 -5.16 16 12 C 0.13 1.45 1.13 -90.62 -0.10 1.35 16 13 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 14 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 15 C -0.18 -1.89 8.37 37.15 0.31 -1.58 16 16 C -0.04 -0.69 9.57 -39.16 -0.37 -1.06 16 17 C -0.23 -4.67 9.14 -39.48 -0.36 -5.03 16 18 C 0.15 3.52 6.67 -38.83 -0.26 3.26 16 19 O -0.15 -4.11 9.53 -14.28 -0.14 -4.24 16 20 C -0.39 -10.39 9.48 30.87 0.29 -10.10 16 21 H 0.10 2.34 5.19 -52.49 -0.27 2.07 16 22 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 23 N -0.85 -23.94 13.67 55.48 0.76 -23.18 16 24 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 30 H 0.05 0.54 7.67 -51.93 -0.40 0.15 16 31 H 0.12 1.56 6.28 -52.49 -0.33 1.23 16 32 H 0.11 1.06 8.02 -52.49 -0.42 0.64 16 33 H 0.40 4.15 8.75 -182.60 -1.60 2.55 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.03 5.88 -51.93 -0.31 0.73 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.04 5.88 -51.93 -0.31 0.73 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.12 2.09 7.54 -52.49 -0.40 1.69 16 44 H 0.14 2.78 5.62 -52.49 -0.29 2.49 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -32.00 382.02 -6.26 -38.25 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.23 Total: 5.93 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.10 Total: -5.73 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 1.26 Total: -33.99 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -1.12 Total: -24.73 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.00 -6.26 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003574800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.374 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds