Wall clock time and date at job start Tue Mar 31 2020 05:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40641 * 120.41129 * 273.14967 * 3 2 1 5 5 S 1.76194 * 119.87658 * 359.84941 * 4 3 2 6 6 C 1.76206 * 100.00291 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99549 * 359.97438 * 6 5 4 8 8 C 1.38797 * 120.00098 * 179.72344 * 6 5 4 9 9 N 1.31549 * 119.99980 * 0.27327 * 8 6 5 10 10 Si 1.86799 * 120.00029 * 180.27341 * 8 6 5 11 11 H 1.48508 * 109.46902 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47291 * 119.99691 * 10 8 6 13 13 H 1.48502 * 109.47086 * 240.00102 * 10 8 6 14 14 N 1.32318 * 120.25152 * 180.11925 * 4 3 2 15 15 C 1.32432 * 121.58129 * 359.62215 * 14 4 3 16 16 C 1.48231 * 119.33472 * 180.34343 * 15 14 4 17 17 C 1.39423 * 120.12561 * 45.18839 * 16 15 14 18 18 C 1.37999 * 119.86724 * 179.81130 * 17 16 15 19 19 C 1.38334 * 120.12781 * 0.44424 * 18 17 16 20 20 C 1.38339 * 120.26545 * 359.79230 * 19 18 17 21 21 C 1.37997 * 120.12266 * 359.97438 * 20 19 18 22 22 C 1.40142 * 121.33129 * 0.57701 * 15 14 4 23 23 C 1.37339 * 119.11637 * 359.51566 * 22 15 14 24 24 C 1.50352 * 122.89346 * 180.42005 * 23 22 15 25 25 C 1.52814 * 110.49953 * 342.52357 * 24 23 22 26 26 C 1.53310 * 108.42104 * 50.73869 * 25 24 23 27 27 C 1.50525 * 118.36499 * 179.36184 * 22 15 14 28 28 H 0.97003 * 120.00015 * 179.97438 * 9 8 6 29 29 H 1.08000 * 120.06523 * 0.02562 * 17 16 15 30 30 H 1.07999 * 119.93652 * 180.19277 * 18 17 16 31 31 H 1.08010 * 119.86761 * 179.76329 * 19 18 17 32 32 H 1.07997 * 119.93941 * 179.97438 * 20 19 18 33 33 H 1.08005 * 120.06125 * 180.02562 * 21 20 19 34 34 H 1.09001 * 109.26906 * 102.78397 * 24 23 22 35 35 H 1.09005 * 109.27402 * 222.29159 * 24 23 22 36 36 H 1.09003 * 109.67429 * 170.47838 * 25 24 23 37 37 H 1.09005 * 109.67224 * 290.97120 * 25 24 23 38 38 H 1.09005 * 109.63932 * 50.01329 * 26 25 24 39 39 H 1.09005 * 109.63689 * 170.41133 * 26 25 24 40 40 H 1.08993 * 109.26688 * 42.14576 * 27 22 15 41 41 H 1.09004 * 109.26822 * 282.67298 * 27 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2800 -0.0657 1.2111 5 16 2.4067 -0.1461 2.7393 6 6 3.7622 -0.2097 3.8633 7 1 4.7752 -0.1922 3.4892 8 6 3.5280 -0.2771 5.2298 9 7 2.2942 -0.2989 5.6854 10 14 4.9650 -0.3368 6.4218 11 1 6.2404 -0.2994 5.6619 12 1 4.8993 0.8321 7.3353 13 1 4.8978 -1.5900 7.2157 14 7 4.6031 -0.0625 1.2075 15 6 5.2935 -0.0051 0.0789 16 6 6.7749 -0.0122 0.1325 17 6 7.4408 -0.9144 0.9611 18 6 8.8201 -0.9189 1.0040 19 6 9.5417 -0.0245 0.2339 20 6 8.8864 0.8763 -0.5864 21 6 7.5075 0.8869 -0.6412 22 6 4.6519 0.0670 -1.1650 23 6 3.2793 0.0680 -1.2098 24 6 2.5044 0.1333 -2.4966 25 6 3.3982 0.6229 -3.6353 26 6 4.6802 -0.2178 -3.6407 27 6 5.5021 0.1443 -2.4048 28 1 2.1305 -0.3463 6.6403 29 1 6.8783 -1.6106 1.5655 30 1 9.3371 -1.6194 1.6430 31 1 10.6210 -0.0292 0.2736 32 1 9.4549 1.5725 -1.1851 33 1 6.9969 1.5903 -1.2823 34 1 2.1248 -0.8594 -2.7387 35 1 1.6660 0.8197 -2.3774 36 1 2.8783 0.5058 -4.5862 37 1 3.6477 1.6727 -3.4805 38 1 4.4238 -1.2769 -3.6127 39 1 5.2547 -0.0039 -4.5420 40 1 6.3372 -0.5499 -2.3120 41 1 5.8880 1.1579 -2.5137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004052143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:57 Heat of formation + Delta-G solvation = 64.939224 kcal Electronic energy + Delta-G solvation = -25501.225448 eV Core-core repulsion = 22049.930818 eV Total energy + Delta-G solvation = -3451.294629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.099 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54720 -38.67559 -36.63501 -36.08973 -33.25251 -32.80686 -31.28135 -30.90654 -30.05346 -28.86441 -25.94810 -24.64004 -23.48747 -23.29947 -22.12831 -21.45999 -19.55654 -18.36005 -17.80521 -17.04227 -16.61670 -15.76838 -15.28979 -15.05016 -14.89518 -14.53567 -14.11315 -13.90793 -13.85077 -13.44966 -13.31390 -13.11867 -12.95341 -12.76159 -12.50918 -12.41741 -12.31774 -11.99994 -11.92900 -11.44509 -11.25087 -11.19211 -11.07264 -11.01118 -10.88283 -10.82231 -10.45154 -10.17395 -9.64009 -9.20981 -8.98995 -8.95073 -8.82479 -8.79991 -8.26596 -6.91165 -6.58802 -4.29398 0.74836 1.51165 1.61719 1.64887 2.83428 3.09704 3.14584 3.18921 3.26264 3.43108 3.86638 3.93174 4.27240 4.37251 4.49415 4.69314 4.78573 4.84999 4.87698 4.99175 5.01273 5.05917 5.13226 5.19037 5.26327 5.48403 5.52652 5.57549 5.63322 5.69394 5.72917 5.81665 5.85309 5.90562 5.97735 6.01785 6.11274 6.17388 6.27821 6.36501 6.50265 6.57624 6.59281 6.71322 6.95238 7.07430 7.46606 8.01978 8.30065 8.41295 8.93190 10.48452 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.008521 B = 0.005583 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3285.287307 B = 5013.976569 C = 8105.321754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.276 3.724 3 C -0.125 4.125 4 C 0.141 3.859 5 S 0.140 5.860 6 C -0.537 4.537 7 H 0.114 0.886 8 C 0.074 3.926 9 N -0.868 5.868 10 Si 0.930 3.070 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.277 1.277 14 N -0.466 5.466 15 C 0.215 3.785 16 C -0.035 4.035 17 C -0.078 4.078 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.128 4.128 21 C -0.100 4.100 22 C -0.177 4.177 23 C 0.039 3.961 24 C -0.087 4.087 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.064 4.064 28 H 0.276 0.724 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.646 0.735 -16.161 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.039 4.039 3 C -0.144 4.144 4 C -0.109 4.109 5 S 0.398 5.602 6 C -0.685 4.685 7 H 0.132 0.868 8 C -0.136 4.136 9 N -0.501 5.501 10 Si 0.755 3.245 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.203 1.203 14 N -0.177 5.177 15 C 0.066 3.934 16 C -0.036 4.036 17 C -0.097 4.097 18 C -0.143 4.143 19 C -0.135 4.135 20 C -0.146 4.146 21 C -0.119 4.119 22 C -0.186 4.186 23 C 0.029 3.971 24 C -0.124 4.124 25 C -0.154 4.154 26 C -0.158 4.158 27 C -0.101 4.101 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.797 0.654 -14.520 16.990 hybrid contribution 2.012 0.021 0.028 2.012 sum 10.808 0.674 -14.492 18.091 Atomic orbital electron populations 1.81129 1.11778 1.10581 1.07783 1.25225 0.92203 0.93218 0.93225 1.16377 0.85113 1.19057 0.93821 1.24267 0.92472 0.94817 0.99322 1.83849 1.10094 1.76980 0.89231 1.23576 0.95603 1.57374 0.91968 0.86848 1.25214 0.97282 0.93206 0.97888 1.69955 1.19473 1.45100 1.15577 0.85913 0.81097 0.78072 0.79463 1.18691 1.20275 1.20267 1.68294 1.06135 1.15701 1.27608 1.20034 0.92462 0.92377 0.88553 1.18514 0.90213 0.97207 0.97690 1.21342 0.94153 0.98038 0.96131 1.21104 0.93971 0.99542 0.99726 1.21191 0.99676 0.95837 0.96757 1.20996 0.94116 0.99516 0.99981 1.21346 0.93882 0.98039 0.98592 1.19775 0.92606 1.11099 0.95150 1.19406 0.92499 0.92209 0.92992 1.20527 0.97786 1.02551 0.91557 1.21540 0.96077 1.00144 0.97610 1.21586 0.96322 1.00277 0.97614 1.20432 0.97040 1.01688 0.90964 0.91437 0.85261 0.85993 0.86340 0.86047 0.85329 0.89893 0.90448 0.91454 0.91403 0.91637 0.91546 0.90699 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.90 18.54 41.84 0.78 -8.12 16 2 C 0.28 5.40 12.87 -22.47 -0.29 5.11 16 3 C -0.13 -2.38 5.79 -106.21 -0.61 -3.00 16 4 C 0.14 3.08 7.00 -16.44 -0.12 2.97 16 5 S 0.14 3.53 20.63 -107.50 -2.22 1.31 16 6 C -0.54 -14.46 9.26 30.94 0.29 -14.18 16 7 H 0.11 3.04 6.54 -52.49 -0.34 2.70 16 8 C 0.07 1.98 5.49 -17.47 -0.10 1.88 16 9 N -0.87 -24.17 13.22 55.49 0.73 -23.44 16 10 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 11 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 N -0.47 -9.84 8.23 -8.16 -0.07 -9.91 16 15 C 0.21 3.72 6.37 -82.79 -0.53 3.19 16 16 C -0.04 -0.53 4.97 -104.91 -0.52 -1.05 16 17 C -0.08 -1.16 9.65 -39.23 -0.38 -1.54 16 18 C -0.13 -1.54 10.03 -39.63 -0.40 -1.94 16 19 C -0.12 -1.24 10.04 -39.51 -0.40 -1.64 16 20 C -0.13 -1.35 10.03 -39.63 -0.40 -1.75 16 21 C -0.10 -1.22 7.88 -39.23 -0.31 -1.52 16 22 C -0.18 -2.62 5.73 -104.32 -0.60 -3.22 16 23 C 0.04 0.61 5.77 -104.27 -0.60 0.01 16 24 C -0.09 -1.07 5.09 -28.15 -0.14 -1.21 16 25 C -0.12 -1.10 5.98 -26.67 -0.16 -1.26 16 26 C -0.12 -1.10 5.97 -26.68 -0.16 -1.26 16 27 C -0.06 -0.69 4.04 -28.08 -0.11 -0.80 16 28 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.36 5.76 -52.48 -0.30 1.06 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.97 7.47 -51.93 -0.39 0.59 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.64 8.10 -51.93 -0.42 0.21 16 38 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.80 6.93 -51.93 -0.36 0.44 16 41 H 0.07 0.69 6.26 -51.93 -0.33 0.37 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -29.77 357.59 -10.60 -40.36 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.65 Total: 0.08 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -5.53 Total: -21.21 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 1.44 Total: -41.48 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -2.22 Total: 1.31 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.77 -10.60 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004052143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.304 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds