Wall clock time and date at job start Tue Mar 31 2020 05:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38281 * 119.93243 * 2 1 4 4 C 1.38105 * 120.07582 * 179.97438 * 3 2 1 5 5 C 1.38899 * 119.92445 * 359.97438 * 4 3 2 6 6 N 1.39841 * 120.07015 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99985 * 171.54588 * 6 5 4 8 8 C 1.50695 * 109.47377 * 262.38441 * 7 6 5 9 9 H 1.07994 * 120.00040 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00019 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99915 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99986 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47618 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47384 * 119.99999 * 12 10 8 15 15 H 1.48504 * 109.47187 * 239.99717 * 12 10 8 16 16 C 1.34776 * 120.00056 * 351.55124 * 6 5 4 17 17 O 1.21699 * 120.00233 * 0.36631 * 16 6 5 18 18 C 1.46814 * 120.00108 * 180.36453 * 16 6 5 19 19 C 1.43200 * 119.99586 * 352.66735 * 18 16 6 20 20 N 7.66817 * 171.95847 * 157.35692 * 2 1 3 21 21 C 1.38592 * 120.00272 * 172.66666 * 18 16 6 22 22 C 1.40704 * 120.00360 * 180.02562 * 21 18 16 23 23 C 1.38480 * 126.14934 * 179.97438 * 22 21 18 24 24 C 1.40018 * 106.49801 * 180.02562 * 23 22 21 25 25 C 1.35374 * 107.25952 * 0.02562 * 24 23 22 26 26 O 1.33919 * 109.11328 * 0.02562 * 25 24 23 27 27 C 1.38895 * 119.85605 * 0.27255 * 5 4 3 28 28 C 1.38109 * 119.92275 * 359.47658 * 27 5 4 29 29 H 1.09001 * 109.46776 * 89.99943 * 1 2 3 30 30 H 1.08992 * 109.47417 * 210.00257 * 1 2 3 31 31 H 1.09005 * 109.47005 * 330.01130 * 1 2 3 32 32 H 1.08006 * 119.96188 * 359.96744 * 3 2 1 33 33 H 1.07995 * 120.03548 * 179.97438 * 4 3 2 34 34 H 1.09006 * 109.46585 * 22.38117 * 7 6 5 35 35 H 1.08999 * 109.46901 * 142.37848 * 7 6 5 36 36 H 0.97003 * 120.00017 * 180.02562 * 11 10 8 37 37 H 1.08000 * 119.99828 * 0.02562 * 21 18 16 38 38 H 1.08008 * 126.74956 * 359.97438 * 23 22 21 39 39 H 1.08004 * 126.36695 * 180.02562 * 24 23 22 40 40 H 1.08004 * 125.44138 * 180.02562 * 25 24 23 41 41 H 1.07991 * 120.03730 * 179.72320 * 27 5 4 42 42 H 1.08001 * 119.95782 * 180.23187 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.2740 -0.0003 0.0016 6 7 5.6724 -0.0003 0.0027 7 6 6.4047 -1.2552 0.1903 8 6 6.8178 -1.3848 1.6338 9 1 6.5610 -0.6097 2.3406 10 6 7.5246 -2.4923 2.0518 11 7 7.8377 -3.4359 1.1909 12 14 8.0373 -2.6526 3.8408 13 1 7.5669 -1.4655 4.5989 14 1 7.4359 -3.8806 4.4201 15 1 9.5174 -2.7389 3.9258 16 6 6.3464 1.1541 -0.1688 17 8 5.7382 2.1976 -0.3179 18 6 7.8146 1.1529 -0.1757 19 6 8.5310 -0.0421 0.1550 20 7 9.0998 -0.9900 0.4130 21 6 8.5070 2.3082 -0.5022 22 6 9.9141 2.3069 -0.5093 23 6 10.7304 3.3829 -0.8148 24 6 12.0492 2.9281 -0.6951 25 6 11.9934 1.6254 -0.3311 26 8 10.7110 1.2554 -0.2213 27 6 3.5779 -1.2022 -0.0036 28 6 2.1968 -1.1985 0.0011 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 1.6552 2.1327 -0.0005 33 1 4.1163 2.1381 0.0001 34 1 5.7635 -2.0940 -0.0808 35 1 7.2917 -1.2564 -0.4431 36 1 8.3347 -4.2153 1.4851 37 1 7.9666 3.2095 -0.7512 38 1 10.4123 4.3772 -1.0919 39 1 12.9445 3.5086 -0.8622 40 1 12.8467 0.9866 -0.1571 41 1 4.1160 -2.1385 -0.0073 42 1 1.6550 -2.1328 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004094029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:55 Heat of formation + Delta-G solvation = 99.961972 kcal Electronic energy + Delta-G solvation = -28305.714334 eV Core-core repulsion = 24413.185534 eV Total energy + Delta-G solvation = -3892.528800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.51603 -40.42862 -38.24131 -36.46898 -35.29969 -33.62690 -32.96997 -32.58383 -31.44960 -30.40394 -29.06504 -27.54857 -26.16642 -24.21118 -23.51656 -22.03298 -21.84601 -21.20116 -20.50333 -19.80668 -18.14949 -16.80357 -16.72979 -16.51918 -16.02845 -15.43264 -15.15335 -14.83132 -14.67964 -14.45513 -13.91940 -13.68520 -13.43332 -13.21810 -13.00604 -12.95294 -12.71829 -12.69561 -12.56278 -12.42992 -12.15894 -11.93808 -11.78046 -11.65407 -11.39600 -11.03715 -10.91016 -10.58816 -10.36023 -10.25101 -10.06598 -9.89562 -9.82557 -9.07529 -8.82612 -8.49418 -8.38264 -7.85382 -7.11685 -6.17514 -4.23430 0.27313 1.79770 1.97478 2.16736 2.72216 2.98700 3.22512 3.29703 3.32266 3.37972 3.48395 3.89086 4.32869 4.41159 4.49434 4.66063 4.71230 4.87722 4.90609 5.20456 5.23819 5.28520 5.37283 5.54765 5.55471 5.65024 5.69900 5.79134 5.91307 5.94507 5.99700 6.05089 6.12452 6.16448 6.24707 6.42502 6.46532 6.73346 6.84478 6.92295 7.05519 7.08321 7.15841 7.23195 7.71153 7.76872 7.93964 7.99066 8.51499 8.73007 8.79064 9.42972 10.89331 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.010153 B = 0.004486 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.269037 B = 6240.558162 C = 8491.618376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.130 4.130 3 C -0.106 4.106 4 C -0.169 4.169 5 C 0.166 3.834 6 N -0.522 5.522 7 C 0.207 3.793 8 C -0.556 4.556 9 H 0.060 0.940 10 C 0.090 3.910 11 N -0.865 5.865 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.568 3.432 17 O -0.538 6.538 18 C -0.060 4.060 19 C 0.213 3.787 20 N -0.322 5.322 21 C 0.030 3.970 22 C -0.014 4.014 23 C -0.157 4.157 24 C -0.226 4.226 25 C -0.011 4.011 26 O -0.147 6.147 27 C -0.144 4.144 28 C -0.102 4.102 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.116 0.884 33 H 0.178 0.822 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.265 0.735 37 H 0.177 0.823 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.203 0.797 41 H 0.134 0.866 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 11.186 -5.467 12.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C -0.124 4.124 4 C -0.189 4.189 5 C 0.070 3.930 6 N -0.239 5.239 7 C 0.088 3.912 8 C -0.594 4.594 9 H 0.078 0.922 10 C -0.117 4.117 11 N -0.501 5.501 12 Si 0.718 3.282 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.359 3.641 17 O -0.421 6.421 18 C -0.066 4.066 19 C -0.101 4.101 20 N 0.002 4.998 21 C 0.006 3.994 22 C -0.063 4.063 23 C -0.177 4.177 24 C -0.245 4.245 25 C -0.082 4.082 26 O -0.041 6.041 27 C -0.164 4.164 28 C -0.120 4.120 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.134 0.866 33 H 0.195 0.805 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.194 0.806 38 H 0.175 0.825 39 H 0.169 0.831 40 H 0.220 0.780 41 H 0.152 0.848 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.487 9.702 -5.080 10.962 hybrid contribution 0.185 -0.029 1.069 1.085 sum 0.672 9.673 -4.011 10.493 Atomic orbital electron populations 1.20666 0.92012 1.01976 1.01451 1.19794 0.95487 0.93505 1.04279 1.20903 0.93953 0.96840 1.00740 1.22609 0.94282 0.99998 1.01972 1.18022 0.82414 0.94381 0.98136 1.45877 1.04365 1.10502 1.63132 1.20439 0.92701 0.79358 0.98725 1.21220 1.38114 1.06775 0.93264 0.92164 1.24676 0.94594 0.94996 0.97422 1.69876 1.37276 1.08929 1.34028 0.86551 0.78577 0.78145 0.84977 1.19753 1.20789 1.20650 1.17689 0.86360 0.83177 0.76888 1.90420 1.67655 1.32071 1.51925 1.18389 0.91813 0.90141 1.06302 1.24355 0.95574 0.92841 0.97369 1.81228 1.09429 1.06421 1.02713 1.21040 0.87874 0.97708 0.92747 1.19774 0.91423 0.86475 1.08676 1.22368 0.92372 0.99301 1.03636 1.21723 0.98377 0.95664 1.08733 1.24453 0.84865 0.96639 1.02207 1.84352 1.16496 1.36646 1.66604 1.21065 0.94150 0.97491 1.03676 1.20711 0.93326 0.97156 1.00850 0.92032 0.92190 0.92209 0.86637 0.80544 0.93237 0.92510 0.92571 0.80564 0.82452 0.83057 0.78045 0.84835 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.01 36.01 0.36 -0.85 16 2 C -0.13 -2.00 5.88 -104.59 -0.62 -2.62 16 3 C -0.11 -1.71 9.69 -39.61 -0.38 -2.10 16 4 C -0.17 -3.19 9.01 -39.39 -0.35 -3.55 16 5 C 0.17 3.44 6.48 -83.72 -0.54 2.89 16 6 N -0.52 -11.43 2.70 -116.14 -0.31 -11.74 16 7 C 0.21 5.05 4.47 -5.20 -0.02 5.02 16 8 C -0.56 -14.82 6.79 -34.44 -0.23 -15.06 16 9 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 10 C 0.09 2.43 4.05 -17.82 -0.07 2.36 16 11 N -0.87 -24.20 12.74 55.43 0.71 -23.49 16 12 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 16 C 0.57 11.47 7.48 -12.79 -0.10 11.37 16 17 O -0.54 -10.49 12.75 5.19 0.07 -10.43 16 18 C -0.06 -1.13 5.88 -104.37 -0.61 -1.75 16 19 C 0.21 4.67 7.56 -22.50 -0.17 4.50 16 20 N -0.32 -7.87 14.24 41.80 0.60 -7.27 16 21 C 0.03 0.44 9.52 -38.52 -0.37 0.07 16 22 C -0.01 -0.20 6.72 -38.56 -0.26 -0.46 16 23 C -0.16 -1.73 10.91 -38.83 -0.42 -2.15 16 24 C -0.23 -2.33 10.86 -39.94 -0.43 -2.77 16 25 C -0.01 -0.13 12.06 29.71 0.36 0.23 16 26 O -0.15 -2.35 8.12 4.66 0.04 -2.31 16 27 C -0.14 -2.81 9.30 -39.39 -0.37 -3.17 16 28 C -0.10 -1.69 9.69 -39.61 -0.38 -2.08 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.18 3.40 4.61 -55.82 -0.26 3.14 16 34 H 0.05 1.26 5.62 -51.93 -0.29 0.97 16 35 H 0.06 1.45 4.47 -51.93 -0.23 1.22 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.18 1.99 7.62 -52.49 -0.40 1.59 16 38 H 0.16 1.25 8.06 -52.48 -0.42 0.82 16 39 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.20 1.74 8.06 -52.48 -0.42 1.32 16 41 H 0.13 2.73 5.88 -52.49 -0.31 2.42 16 42 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 356.69 15.07 5.38 5.38 Total: -1.00 -31.49 356.69 -7.59 -39.08 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.41 Total: 4.10 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -4.62 Total: -10.09 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.99 Total: -42.51 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.10 Total: -12.74 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.49 -7.59 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004094029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.042 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds