Wall clock time and date at job start Tue Mar 31 2020 05:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30533 * 1 3 3 Si 1.86795 * 119.99858 * 2 1 4 4 H 1.48497 * 109.47470 * 270.00194 * 3 2 1 5 5 H 1.48508 * 109.47257 * 30.00193 * 3 2 1 6 6 H 1.48500 * 109.46914 * 149.99943 * 3 2 1 7 7 C 1.40355 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99426 * 180.02562 * 7 2 1 9 9 C 1.41696 * 119.99800 * 359.97438 * 7 2 1 10 10 O 1.21830 * 120.00477 * 0.02562 * 9 7 2 11 11 C 1.47556 * 119.99409 * 180.02562 * 9 7 2 12 12 C 1.39975 * 120.08488 * 179.97438 * 11 9 7 13 13 C 1.37097 * 119.90664 * 180.02562 * 12 11 9 14 14 C 1.39221 * 120.08800 * 0.02562 * 13 12 11 15 15 O 1.35614 * 119.90349 * 179.70238 * 14 13 12 16 16 C 1.35843 * 118.00207 * 67.43331 * 15 14 13 17 17 C 1.38814 * 120.06254 * 6.11397 * 16 15 14 18 18 C 1.38105 * 119.94167 * 180.02562 * 17 16 15 19 19 C 1.38300 * 120.05908 * 0.02562 * 18 17 16 20 20 C 1.38260 * 120.12305 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.96793 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.47217 * 0.02562 * 21 20 19 23 23 F 1.39903 * 109.47193 * 120.00114 * 21 20 19 24 24 F 1.39902 * 109.47153 * 240.00143 * 21 20 19 25 25 C 1.38138 * 120.06131 * 359.72510 * 20 19 18 26 26 C 1.39221 * 120.18343 * 359.97438 * 14 13 12 27 27 C 1.37097 * 120.08793 * 359.97438 * 26 14 13 28 28 H 0.96996 * 119.99866 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.04962 * 0.02562 * 12 11 9 30 30 H 1.07998 * 119.95126 * 180.02562 * 13 12 11 31 31 H 1.08001 * 120.03048 * 0.02615 * 17 16 15 32 32 H 1.08000 * 119.96764 * 180.02562 * 18 17 16 33 33 H 1.08002 * 119.94077 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.03703 * 180.27635 * 25 20 19 35 35 H 1.07994 * 119.95127 * 179.97438 * 26 14 13 36 36 H 1.08003 * 120.04107 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.4867 2.0465 -1.4000 5 1 1.4367 2.6527 0.7001 6 1 3.5368 1.4401 0.7001 7 6 2.0071 -1.2155 -0.0005 8 1 3.0871 -1.2154 -0.0001 9 6 1.2985 -2.4426 -0.0005 10 8 0.0802 -2.4426 -0.0005 11 6 2.0364 -3.7204 -0.0005 12 6 1.3383 -4.9337 0.0000 13 6 2.0276 -6.1189 0.0005 14 6 3.4198 -6.1166 0.0011 15 8 4.0978 -7.2911 0.0077 16 6 4.0185 -8.0795 -1.0957 17 6 3.3667 -7.6213 -2.2324 18 6 3.2871 -8.4252 -3.3525 19 6 3.8555 -9.6859 -3.3422 20 6 4.5053 -10.1449 -2.2114 21 6 5.1239 -11.5191 -2.2042 22 9 4.9125 -12.1322 -3.4439 23 9 6.4983 -11.4105 -1.9665 24 9 4.5357 -12.2901 -1.1959 25 6 4.5933 -9.3426 -1.0903 26 6 4.1178 -4.9120 0.0005 27 6 3.4360 -3.7226 -0.0011 28 1 -0.4850 0.8400 0.0004 29 1 0.2584 -4.9363 0.0000 30 1 1.4897 -7.0554 0.0005 31 1 2.9223 -6.6370 -2.2408 32 1 2.7804 -8.0690 -4.2373 33 1 3.7917 -10.3132 -4.2191 34 1 5.1048 -9.6998 -0.2087 35 1 5.1977 -4.9146 0.0014 36 1 3.9783 -2.7886 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004105339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:35 Heat of formation + Delta-G solvation = -169.034479 kcal Electronic energy + Delta-G solvation = -26981.036572 eV Core-core repulsion = 22366.860625 eV Total energy + Delta-G solvation = -4614.175947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.42606 -47.95104 -47.87373 -40.98977 -38.91555 -37.69550 -35.96622 -32.85086 -32.19672 -31.05000 -30.82793 -29.44198 -26.90764 -26.28038 -23.77342 -23.01324 -22.17016 -21.75363 -19.95155 -19.21476 -18.74352 -18.65567 -17.40493 -16.93157 -16.65169 -16.28649 -15.78082 -15.65286 -14.79574 -14.78741 -14.51593 -14.35871 -14.32391 -14.21760 -14.04124 -13.97633 -13.75522 -13.60074 -13.18540 -13.07399 -12.90181 -12.58697 -12.20980 -12.10730 -11.91761 -11.65068 -11.40109 -11.24600 -10.94480 -10.82485 -10.46949 -10.17208 -9.55555 -9.12453 -8.73198 -8.65058 -7.99223 -7.65713 -6.46263 -5.07178 0.60919 0.97404 1.29824 1.79188 2.33198 2.94285 3.04694 3.06638 3.08094 3.20004 3.47958 3.77203 3.88479 3.89316 4.15291 4.43948 4.49019 4.73666 4.81799 4.96263 5.09755 5.18492 5.24149 5.45036 5.62466 5.69064 5.76050 5.85320 5.91383 5.97504 5.99376 6.04572 6.38376 6.40050 6.65593 6.79002 7.09214 7.10836 7.15606 7.63330 7.86650 8.62778 8.65587 10.14488 10.35952 Molecular weight = 336.08amu Principal moments of inertia in cm(-1) A = 0.030607 B = 0.002131 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.605446 B =13138.233329 C =13273.915096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.511 4.511 8 H 0.076 0.924 9 C 0.380 3.620 10 O -0.540 6.540 11 C -0.091 4.091 12 C -0.081 4.081 13 C -0.146 4.146 14 C 0.052 3.948 15 O -0.250 6.250 16 C 0.130 3.870 17 C -0.160 4.160 18 C -0.081 4.081 19 C -0.112 4.112 20 C -0.151 4.151 21 C 0.512 3.488 22 F -0.177 7.177 23 F -0.176 7.176 24 F -0.176 7.176 25 C -0.104 4.104 26 C -0.127 4.127 27 C -0.083 4.083 28 H 0.276 0.724 29 H 0.134 0.866 30 H 0.122 0.878 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.787 -16.971 -5.515 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.146 4.146 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.541 4.541 8 H 0.094 0.906 9 C 0.276 3.724 10 O -0.430 6.430 11 C -0.093 4.093 12 C -0.100 4.100 13 C -0.164 4.164 14 C 0.011 3.989 15 O -0.161 6.161 16 C 0.086 3.914 17 C -0.179 4.179 18 C -0.099 4.099 19 C -0.131 4.131 20 C -0.153 4.153 21 C 0.458 3.542 22 F -0.158 7.158 23 F -0.157 7.157 24 F -0.157 7.157 25 C -0.123 4.123 26 C -0.145 4.145 27 C -0.101 4.101 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.144 0.856 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.151 -17.007 -5.332 20.035 hybrid contribution 0.606 0.544 -0.003 0.815 sum 9.758 -16.463 -5.335 19.867 Atomic orbital electron populations 1.69947 1.07618 1.28422 1.29819 1.26032 0.94694 1.01176 0.92746 0.86336 0.80473 0.80690 0.79320 1.19270 1.20033 1.18397 1.20957 0.95030 0.91589 1.46562 0.90583 1.18086 0.88566 0.85725 0.79989 1.90529 1.14886 1.88297 1.49308 1.22144 0.94213 0.98108 0.94815 1.21186 1.00910 0.90787 0.97096 1.21178 0.92724 0.99074 1.03463 1.18805 0.90188 0.83349 1.06587 1.84335 1.67309 1.29483 1.34972 1.19032 0.95575 0.90388 0.86376 1.21775 1.01142 1.02006 0.92928 1.21005 0.97789 0.92888 0.98181 1.20925 0.97911 0.96976 0.97239 1.19612 1.05143 0.93269 0.97240 1.18202 0.76350 0.86067 0.73588 1.93166 1.94646 1.84876 1.43094 1.93227 1.31991 1.96299 1.94191 1.93229 1.83893 1.77612 1.60948 1.19974 1.02063 0.91688 0.98544 1.20947 1.00074 0.90927 1.02591 1.21378 0.94149 0.97328 0.97232 0.91254 0.84850 0.86041 0.83792 0.84306 0.84336 0.84060 0.85642 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.09 11.73 55.57 0.65 -19.44 16 2 C 0.08 1.98 5.50 -17.31 -0.10 1.89 16 3 Si 0.91 18.25 29.56 -169.99 -5.03 13.22 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.51 -13.18 8.85 -37.47 -0.33 -13.51 16 8 H 0.08 1.75 6.01 -52.49 -0.32 1.43 16 9 C 0.38 10.12 6.91 -34.46 -0.24 9.89 16 10 O -0.54 -16.37 14.89 5.07 0.08 -16.29 16 11 C -0.09 -1.98 5.89 -104.80 -0.62 -2.59 16 12 C -0.08 -1.58 9.57 -39.35 -0.38 -1.95 16 13 C -0.15 -2.37 8.31 -39.63 -0.33 -2.70 16 14 C 0.05 0.83 4.74 -38.85 -0.18 0.64 16 15 O -0.25 -3.67 9.98 -2.56 -0.03 -3.69 16 16 C 0.13 1.68 6.54 -39.17 -0.26 1.42 16 17 C -0.16 -1.92 8.79 -39.42 -0.35 -2.27 16 18 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 19 C -0.11 -1.06 9.43 -39.55 -0.37 -1.43 16 20 C -0.15 -1.57 5.37 -104.65 -0.56 -2.14 16 21 C 0.51 5.11 3.32 36.01 0.12 5.23 16 22 F -0.18 -1.69 15.97 2.25 0.04 -1.66 16 23 F -0.18 -1.83 17.23 2.25 0.04 -1.79 16 24 F -0.18 -1.84 17.24 2.25 0.04 -1.81 16 25 C -0.10 -1.18 9.54 -39.42 -0.38 -1.56 16 26 C -0.13 -2.02 9.95 -39.63 -0.39 -2.41 16 27 C -0.08 -1.51 9.41 -39.35 -0.37 -1.88 16 28 H 0.28 6.80 8.29 -40.82 -0.34 6.46 16 29 H 0.13 2.65 7.65 -52.49 -0.40 2.25 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.14 1.86 6.20 -52.49 -0.33 1.53 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 1.03 7.15 -52.49 -0.38 0.65 16 34 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.14 2.42 6.19 -52.48 -0.33 2.10 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -30.02 333.78 -6.88 -36.90 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -2.57 Total: 4.09 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -5.13 Total: -14.56 kcal Atomic # 7 Polarization: -20.09 SS G_CDS: 0.65 Total: -19.44 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.05 Total: -19.99 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.11 Total: -5.26 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.02 -6.88 -36.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004105339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.137 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds