Wall clock time and date at job start Tue Mar 31 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48498 * 109.47157 * 270.00190 * 3 2 1 5 5 H 1.48506 * 109.46988 * 30.00167 * 3 2 1 6 6 H 1.48497 * 109.46930 * 150.00000 * 3 2 1 7 7 C 1.37871 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99705 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00401 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47352 * 179.97438 * 9 7 2 11 11 C 1.46495 * 120.00410 * 274.99936 * 10 9 7 12 12 C 1.50700 * 109.47356 * 275.00454 * 11 10 9 13 13 C 1.33385 * 125.20794 * 90.00008 * 12 11 10 14 14 C 1.38428 * 114.92186 * 179.97438 * 13 12 11 15 15 C 1.33384 * 114.92110 * 359.97438 * 14 13 12 16 16 S 1.75886 * 109.59459 * 359.76080 * 15 14 13 17 17 S 1.65607 * 119.99715 * 95.00072 * 10 9 7 18 18 O 1.42107 * 106.40053 * 156.46250 * 17 10 9 19 19 O 1.42099 * 106.40001 * 23.54127 * 17 10 9 20 20 C 1.76198 * 107.21643 * 269.99735 * 17 10 9 21 21 C 1.38235 * 119.99504 * 90.00277 * 20 17 10 22 22 C 1.38243 * 119.99602 * 179.97438 * 21 20 17 23 23 C 1.38231 * 120.00070 * 0.07188 * 22 21 20 24 24 C 1.38234 * 119.99892 * 359.90902 * 23 22 21 25 25 C 1.38230 * 120.00170 * 269.97984 * 20 17 10 26 26 H 0.96997 * 120.00342 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47178 * 59.99705 * 9 7 2 28 28 H 1.09001 * 109.47101 * 300.00545 * 9 7 2 29 29 H 1.09001 * 109.47081 * 34.99735 * 11 10 9 30 30 H 1.09000 * 109.47623 * 154.99736 * 11 10 9 31 31 H 1.08003 * 122.53896 * 359.94624 * 13 12 11 32 32 H 1.07997 * 122.53570 * 180.02562 * 14 13 12 33 33 H 1.07999 * 125.20314 * 180.02562 * 15 14 13 34 34 H 1.08000 * 120.00616 * 359.70285 * 21 20 17 35 35 H 1.08001 * 119.99556 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.99633 * 179.97438 * 23 22 21 37 37 H 1.07999 * 119.99751 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.00371 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 2.7633 -4.0964 -1.2669 12 6 1.8180 -5.0933 -1.8863 13 6 0.8326 -4.7947 -2.7342 14 6 0.0928 -5.8790 -3.1739 15 6 0.4777 -7.0581 -2.6833 16 16 1.8510 -6.8298 -1.6084 17 16 2.6462 -4.3244 1.4254 18 8 3.0862 -5.6360 1.1005 19 8 1.5965 -4.0626 2.3468 20 6 4.0601 -3.4592 2.0228 21 6 3.9012 -2.3662 2.8541 22 6 5.0106 -1.6877 3.3233 23 6 6.2785 -2.1012 2.9599 24 6 6.4373 -3.1944 2.1289 25 6 5.3281 -3.8736 1.6606 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8880 29 1 2.9026 -3.2565 -1.9476 30 1 3.7244 -4.5751 -1.0791 31 1 0.6272 -3.7835 -3.0533 32 1 -0.7330 -5.7778 -3.8625 33 1 0.0192 -8.0082 -2.9145 34 1 2.9104 -2.0397 3.1336 35 1 4.8864 -0.8335 3.9724 36 1 7.1451 -1.5708 3.3261 37 1 7.4280 -3.5178 1.8454 38 1 5.4522 -4.7275 1.0111 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004325324.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:22 Heat of formation + Delta-G solvation = -7.215116 kcal Electronic energy + Delta-G solvation = -24933.175176 eV Core-core repulsion = 21380.643894 eV Total energy + Delta-G solvation = -3552.531282 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.059 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.80408 -37.74478 -36.68998 -35.57646 -35.24493 -32.68020 -31.02901 -30.78798 -30.04510 -27.25763 -25.19761 -23.02082 -22.81142 -22.47407 -22.05875 -19.00702 -18.58148 -17.64048 -16.89121 -16.82739 -16.22656 -15.75438 -15.57519 -15.05428 -14.86504 -14.34692 -14.30548 -13.71949 -13.29727 -13.12160 -12.96569 -12.67830 -12.43899 -12.29329 -12.13994 -11.99744 -11.93359 -11.50657 -11.47713 -11.20830 -11.10796 -11.03313 -10.77685 -10.59437 -10.40813 -10.29634 -10.08058 -9.86000 -9.16348 -8.79797 -8.53938 -8.40676 -8.17726 -8.07317 -6.14790 -4.21611 0.86447 1.17952 1.37355 1.53619 2.01750 2.39834 3.06936 3.21617 3.29580 3.31401 3.55221 3.86741 4.33414 4.34951 4.76306 5.03460 5.07067 5.16129 5.18404 5.20919 5.28170 5.39544 5.51993 5.69602 5.82297 5.90453 5.93361 6.03711 6.13014 6.29328 6.37623 6.42674 6.49692 6.54473 6.66546 6.83377 7.06143 7.28054 7.36810 7.53810 7.81680 8.09884 8.83566 9.44864 10.93054 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.009828 B = 0.006064 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.265144 B = 4616.619281 C = 6612.823479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.244 3.756 10 N -0.975 5.975 11 C 0.201 3.799 12 C -0.187 4.187 13 C -0.125 4.125 14 C -0.135 4.135 15 C -0.233 4.233 16 S 0.119 5.881 17 S 2.685 3.315 18 O -0.971 6.971 19 O -0.955 6.955 20 C -0.664 4.664 21 C 0.002 3.998 22 C -0.144 4.144 23 C -0.073 4.073 24 C -0.150 4.150 25 C -0.026 4.026 26 H 0.265 0.735 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.392 -8.326 -1.283 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.123 3.877 10 N -0.813 5.813 11 C 0.073 3.927 12 C -0.306 4.306 13 C -0.156 4.156 14 C -0.166 4.166 15 C -0.369 4.369 16 S 0.383 5.617 17 S 2.775 3.225 18 O -0.961 6.961 19 O -0.946 6.946 20 C -0.750 4.750 21 C -0.017 4.017 22 C -0.163 4.163 23 C -0.091 4.091 24 C -0.169 4.169 25 C -0.046 4.046 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.175 0.825 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.718 -9.854 0.009 13.156 hybrid contribution 0.032 2.638 -0.928 2.797 sum 8.750 -7.216 -0.919 11.379 Atomic orbital electron populations 1.69931 1.05953 1.27159 1.49464 1.24911 0.94757 0.99049 0.94887 0.86628 0.79935 0.83449 0.78252 1.20583 1.21076 1.19762 1.21542 0.93588 0.90696 1.52299 0.91933 1.19286 0.87157 0.81337 0.99950 1.57486 1.57072 1.49146 1.17597 1.19480 0.92235 0.94375 0.86605 1.25152 1.04393 0.96949 1.04133 1.20224 0.95651 1.00567 0.99194 1.20153 1.01909 0.91769 1.02759 1.25701 1.03877 1.02108 1.05241 1.84656 1.29748 1.02663 1.44683 1.02109 0.73701 0.73328 0.73354 1.93522 1.83254 1.35136 1.84169 1.93554 1.53189 1.85561 1.62275 1.31194 1.17495 1.13211 1.13087 1.21019 1.00242 0.90182 0.90240 1.21287 0.92670 1.00601 1.01710 1.21376 0.97361 0.95279 0.95129 1.21171 0.98660 0.97130 0.99900 1.20862 0.91123 0.97159 0.95428 0.92550 0.93787 0.92857 0.87813 0.90424 0.83898 0.84806 0.82508 0.83890 0.85402 0.85844 0.85641 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.63 13.29 55.43 0.74 -23.89 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -13.67 9.38 -34.44 -0.32 -13.99 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.24 5.83 5.43 -5.20 -0.03 5.80 16 10 N -0.98 -19.54 2.75 -116.96 -0.32 -19.86 16 11 C 0.20 3.43 5.83 -5.20 -0.03 3.40 16 12 C -0.19 -3.12 6.09 -36.00 -0.22 -3.34 16 13 C -0.13 -2.00 10.05 -41.21 -0.41 -2.41 16 14 C -0.13 -1.90 10.18 -41.21 -0.42 -2.32 16 15 C -0.23 -3.18 11.23 29.04 0.33 -2.86 16 16 S 0.12 1.85 22.75 -107.50 -2.45 -0.59 16 17 S 2.69 53.09 5.65 -107.50 -0.61 52.48 16 18 O -0.97 -18.69 15.67 -57.17 -0.90 -19.59 16 19 O -0.96 -21.93 15.84 -57.17 -0.91 -22.83 16 20 C -0.66 -11.89 5.97 -39.59 -0.24 -12.12 16 21 C 0.00 0.04 9.52 -39.58 -0.38 -0.33 16 22 C -0.14 -2.17 10.05 -39.58 -0.40 -2.56 16 23 C -0.07 -0.96 10.05 -39.59 -0.40 -1.36 16 24 C -0.15 -1.98 10.05 -39.58 -0.40 -2.37 16 25 C -0.03 -0.40 9.52 -39.59 -0.38 -0.78 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 27 H 0.04 1.09 8.11 -51.93 -0.42 0.67 16 28 H 0.05 1.41 6.92 -51.93 -0.36 1.05 16 29 H 0.10 1.70 8.11 -51.93 -0.42 1.28 16 30 H 0.08 1.15 7.61 -51.93 -0.40 0.75 16 31 H 0.14 2.26 8.06 -52.48 -0.42 1.83 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.14 2.68 7.62 -52.49 -0.40 2.28 16 35 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -30.76 356.06 -11.96 -42.72 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.48 Total: 4.52 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: -3.39 Total: -33.59 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.41 Total: -43.75 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -1.80 Total: -42.42 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -3.05 Total: 51.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.76 -11.96 -42.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004325324.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.506 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds