Wall clock time and date at job start Tue Mar 31 2020 04:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46777 * 2 1 4 4 O 1.42893 * 109.47152 * 119.99616 * 2 1 3 5 5 C 1.35698 * 116.99993 * 84.90084 * 4 2 1 6 6 C 1.39015 * 119.91042 * 174.27570 * 5 4 2 7 7 C 1.37681 * 120.09352 * 179.72449 * 6 5 4 8 8 C 1.39792 * 119.90680 * 0.54479 * 7 6 5 9 9 C 1.47460 * 120.09113 * 179.70304 * 8 7 6 10 10 O 1.21511 * 119.99776 * 180.02562 * 9 8 7 11 11 O 1.34748 * 120.00587 * 0.02562 * 9 8 7 12 12 C 1.45200 * 117.00590 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47319 * 179.97438 * 12 11 9 14 14 O 1.21283 * 119.99951 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00105 * 179.97438 * 13 12 11 16 16 C 1.46507 * 119.99864 * 0.02562 * 15 13 12 17 17 C 1.46500 * 120.00412 * 180.02562 * 15 13 12 18 18 C 1.50699 * 109.47055 * 90.00092 * 17 15 13 19 19 H 1.07994 * 120.00162 * 359.97438 * 18 17 15 20 20 C 1.37880 * 119.99566 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00566 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99715 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47086 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46945 * 119.99717 * 22 20 18 25 25 H 1.48494 * 109.47561 * 240.00099 * 22 20 18 26 26 C 1.39788 * 119.81342 * 359.72423 * 8 7 6 27 27 C 1.37681 * 119.90723 * 0.02562 * 26 8 7 28 28 H 1.08996 * 109.47145 * 300.00109 * 1 2 3 29 29 H 1.08998 * 109.46649 * 60.00325 * 1 2 3 30 30 H 1.09004 * 109.46554 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47145 * 239.99891 * 2 1 3 32 32 H 1.08999 * 109.46988 * 59.99690 * 3 2 1 33 33 H 1.08993 * 109.47089 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46928 * 299.99722 * 3 2 1 35 35 H 1.07998 * 119.94710 * 359.97438 * 6 5 4 36 36 H 1.07999 * 120.04294 * 180.24574 * 7 6 5 37 37 H 1.08995 * 109.46774 * 299.99983 * 12 11 9 38 38 H 1.09003 * 109.46967 * 59.99600 * 12 11 9 39 39 H 1.09005 * 109.46967 * 89.99877 * 16 15 13 40 40 H 1.09001 * 109.47410 * 209.99846 * 16 15 13 41 41 H 1.08996 * 109.47119 * 330.00165 * 16 15 13 42 42 H 1.09000 * 109.47505 * 210.00507 * 17 15 13 43 43 H 1.09002 * 109.46837 * 330.00392 * 17 15 13 44 44 H 0.96993 * 120.00412 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.05005 * 179.97438 * 26 8 7 46 46 H 1.08009 * 119.95480 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.1104 -2.0248 1.0987 6 6 2.6782 -2.7303 2.1535 7 6 2.7805 -4.1019 2.0909 8 6 2.3228 -4.7840 0.9597 9 6 2.4363 -6.2524 0.8856 10 8 2.0384 -6.8436 -0.0986 11 8 2.9813 -6.9386 1.9092 12 6 3.0603 -8.3816 1.7677 13 6 3.6938 -8.9733 3.0004 14 8 4.0437 -8.2502 3.9090 15 7 3.8704 -10.3061 3.0936 16 6 3.4471 -11.1797 1.9963 17 6 4.4857 -10.8815 4.2922 18 6 3.4138 -11.2071 5.3001 19 1 2.3779 -11.0053 5.0710 20 6 3.7557 -11.7618 6.5152 21 7 5.0172 -12.0072 6.7945 22 14 2.4271 -12.1648 7.7650 23 1 1.0990 -11.7961 7.2119 24 1 2.4522 -13.6195 8.0625 25 1 2.6734 -11.3998 9.0136 26 6 1.7577 -4.0702 -0.1010 27 6 1.6545 -2.6992 -0.0281 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.0358 -2.2020 3.0249 36 1 3.2180 -4.6495 2.9124 37 1 2.0574 -8.7897 1.6425 38 1 3.6647 -8.6285 0.8948 39 1 4.2701 -11.3035 1.2923 40 1 3.1614 -12.1527 2.3959 41 1 2.5951 -10.7328 1.4841 42 1 5.0212 -11.7923 4.0242 43 1 5.1833 -10.1633 4.7229 44 1 5.2578 -12.3971 7.6494 45 1 1.4033 -4.5933 -0.9769 46 1 1.2184 -2.1469 -0.8475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004331725.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:53 Heat of formation + Delta-G solvation = -129.902024 kcal Electronic energy + Delta-G solvation = -27725.027133 eV Core-core repulsion = 23580.647673 eV Total energy + Delta-G solvation = -4144.379460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92923 -40.26463 -38.87505 -37.79870 -36.24800 -34.83999 -33.76377 -32.66554 -31.43021 -30.68021 -29.14780 -27.82192 -27.24045 -25.70287 -24.37531 -23.62215 -22.61279 -21.58213 -20.79473 -18.93059 -18.71331 -18.00078 -16.90385 -16.73035 -16.34805 -16.23618 -15.95614 -15.82712 -15.29846 -15.08411 -14.64276 -14.49808 -14.29026 -14.04725 -13.72617 -13.36908 -13.25252 -13.06941 -12.89061 -12.69414 -12.63442 -12.31642 -12.30539 -12.17919 -12.06866 -11.87180 -11.63276 -11.23556 -11.21395 -11.02297 -10.91660 -10.65925 -10.63614 -10.58438 -10.17905 -9.64053 -9.40019 -9.00558 -8.62917 -8.45746 -7.73652 -6.06466 -4.11380 0.53008 1.02760 2.42029 2.46656 2.68892 3.25243 3.29531 3.37401 3.41967 3.52464 3.90950 4.20036 4.32957 4.43092 4.43514 4.48024 4.57731 4.71382 4.86571 4.93376 5.01329 5.03645 5.12758 5.19423 5.20928 5.24383 5.25798 5.28501 5.40077 5.56443 5.61044 5.62455 5.68877 5.85086 5.87604 5.90480 6.07689 6.16632 6.33818 6.36819 6.97478 6.97628 7.38411 7.45761 7.72272 7.89751 8.19438 8.28099 8.83962 8.98679 9.53763 11.01718 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.001969 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.565363 B =14215.266559 C =14965.000445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.074 3.926 3 C -0.149 4.149 4 O -0.305 6.305 5 C 0.167 3.833 6 C -0.167 4.167 7 C -0.015 4.015 8 C -0.165 4.165 9 C 0.512 3.488 10 O -0.515 6.515 11 O -0.325 6.325 12 C 0.052 3.948 13 C 0.506 3.494 14 O -0.519 6.519 15 N -0.597 5.597 16 C 0.078 3.922 17 C 0.246 3.754 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.012 4.012 27 C -0.228 4.228 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.263 0.737 45 H 0.140 0.860 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 22.178 -18.050 29.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.018 3.982 3 C -0.206 4.206 4 O -0.218 6.218 5 C 0.120 3.880 6 C -0.185 4.185 7 C -0.033 4.033 8 C -0.166 4.166 9 C 0.358 3.642 10 O -0.406 6.406 11 O -0.240 6.240 12 C -0.025 4.025 13 C 0.290 3.710 14 O -0.395 6.395 15 N -0.331 5.331 16 C -0.066 4.066 17 C 0.127 3.873 18 C -0.567 4.567 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.208 1.208 26 C -0.030 4.030 27 C -0.247 4.247 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.158 0.842 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.890 22.410 -17.521 29.269 hybrid contribution -0.905 -0.607 0.357 1.147 sum -7.796 21.804 -17.164 28.823 Atomic orbital electron populations 1.22413 0.94741 1.03413 1.03419 1.22543 0.94598 0.93867 0.87225 1.21865 1.02283 0.93257 1.03244 1.86115 1.80279 1.16316 1.39126 1.19360 0.92075 0.82669 0.93858 1.20478 1.05136 0.93505 0.99409 1.21484 0.92158 0.93212 0.96468 1.18986 1.10076 0.89378 0.98164 1.21088 0.74164 0.88559 0.80419 1.90817 1.46517 1.70836 1.32431 1.86599 1.73369 1.21068 1.42960 1.22927 1.03063 0.77380 0.99153 1.19710 0.80728 0.83199 0.87339 1.90711 1.49807 1.59334 1.39651 1.48095 1.60364 1.04497 1.20192 1.21737 0.98694 0.96423 0.89752 1.19363 0.93785 0.93964 0.80139 1.21468 0.93721 1.41172 1.00352 0.92304 1.24940 0.95625 0.95545 0.98002 1.69935 1.16077 1.43724 1.23545 0.86425 0.81819 0.77798 0.81272 1.19784 1.20954 1.20815 1.21020 0.92211 0.92934 0.96842 1.21200 1.08990 0.94945 0.99531 0.91217 0.90788 0.91584 0.90528 0.91303 0.91483 0.90354 0.84132 0.82962 0.88558 0.88697 0.93292 0.90228 0.92451 0.94584 0.93598 0.92706 0.84198 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.92 9.17 37.16 0.34 -0.58 16 2 C 0.07 0.44 2.84 -26.73 -0.08 0.36 16 3 C -0.15 -0.66 9.56 37.16 0.36 -0.31 16 4 O -0.31 -2.72 9.79 -18.80 -0.18 -2.91 16 5 C 0.17 1.62 6.61 -39.01 -0.26 1.36 16 6 C -0.17 -1.72 9.97 -39.50 -0.39 -2.12 16 7 C -0.02 -0.18 9.61 -39.20 -0.38 -0.55 16 8 C -0.16 -2.08 5.87 -104.98 -0.62 -2.70 16 9 C 0.51 7.75 7.89 34.49 0.27 8.02 16 10 O -0.52 -8.36 16.13 -19.28 -0.31 -8.67 16 11 O -0.33 -5.52 9.00 -47.30 -0.43 -5.95 16 12 C 0.05 0.86 4.51 36.01 0.16 1.02 16 13 C 0.51 10.76 7.75 -10.99 -0.09 10.67 16 14 O -0.52 -13.34 16.08 -14.10 -0.23 -13.57 16 15 N -0.60 -12.66 2.86 -182.95 -0.52 -13.19 16 16 C 0.08 1.21 10.24 59.85 0.61 1.82 16 17 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 18 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 22 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C -0.01 -0.12 9.58 -39.21 -0.38 -0.50 16 27 C -0.23 -2.01 8.21 -39.50 -0.32 -2.34 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.38 6.90 -51.93 -0.36 0.02 16 31 H 0.08 0.39 6.30 -51.93 -0.33 0.06 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.15 1.85 7.60 -52.49 -0.40 1.45 16 37 H 0.10 1.43 7.40 -51.93 -0.38 1.04 16 38 H 0.10 1.34 8.10 -51.93 -0.42 0.92 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 41 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 42 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.14 1.34 7.64 -52.49 -0.40 0.94 16 46 H 0.14 0.87 5.40 -52.48 -0.28 0.59 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -35.00 392.20 -7.89 -42.89 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.64 Total: -2.54 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -1.21 Total: 6.90 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.21 Total: -38.92 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.15 Total: -31.10 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.00 -7.89 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004331725.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.008 kcal (2) G-P(sol) polarization free energy of solvation -35.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds