Wall clock time and date at job start Tue Mar 31 2020 05:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35939 * 116.99900 * 2 1 4 4 C 1.38556 * 120.08091 * 0.02562 * 3 2 1 5 5 C 1.38331 * 120.00853 * 179.97438 * 4 3 2 6 6 Cl 1.73601 * 119.91677 * 180.02562 * 5 4 3 7 7 C 1.38429 * 120.16700 * 0.02562 * 5 4 3 8 8 C 1.50707 * 119.91634 * 179.97438 * 7 5 4 9 9 C 1.38136 * 120.16381 * 359.97438 * 7 5 4 10 10 C 1.38808 * 119.99308 * 359.76782 * 9 7 5 11 11 N 1.39980 * 120.08552 * 180.27738 * 10 9 7 12 12 C 1.37803 * 120.06531 * 90.23237 * 11 10 9 13 13 C 1.33159 * 121.55885 * 179.97438 * 12 11 10 14 14 N 1.37678 * 121.57620 * 0.02562 * 13 12 11 15 15 C 1.36217 * 120.04724 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99656 * 149.18926 * 15 14 13 17 17 C 1.39418 * 120.00085 * 329.19016 * 15 14 13 18 18 N 1.31054 * 120.00015 * 161.40888 * 17 15 14 19 19 Si 1.86796 * 119.99990 * 341.40919 * 17 15 14 20 20 H 1.48503 * 109.47415 * 95.37303 * 19 17 15 21 21 H 1.48500 * 109.47208 * 215.37309 * 19 17 15 22 22 H 1.48502 * 109.47097 * 335.36732 * 19 17 15 23 23 C 1.35045 * 119.90428 * 359.97438 * 14 13 12 24 24 O 1.21660 * 120.72953 * 180.02562 * 23 14 13 25 25 C 1.35045 * 120.06328 * 269.95708 * 11 10 9 26 26 O 1.21686 * 120.73038 * 0.02562 * 25 11 10 27 27 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46588 * 299.99733 * 1 2 3 29 29 H 1.08998 * 109.47344 * 60.00128 * 1 2 3 30 30 H 1.08003 * 119.99638 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.46992 * 90.00174 * 8 7 5 32 32 H 1.09001 * 109.47043 * 209.99771 * 8 7 5 33 33 H 1.08998 * 109.47223 * 329.99850 * 8 7 5 34 34 H 1.08003 * 120.00113 * 180.02562 * 9 7 5 35 35 H 1.08003 * 119.22155 * 359.97438 * 12 11 10 36 36 H 1.08006 * 119.20885 * 179.97438 * 13 12 11 37 37 H 0.96995 * 120.00046 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2932 2.3743 0.0005 5 6 1.9227 3.6061 0.0011 6 17 0.9769 5.0618 0.0024 7 6 3.3050 3.6808 0.0005 8 6 3.9850 5.0258 0.0005 9 6 4.0626 2.5257 0.0000 10 6 3.4378 1.2862 0.0049 11 7 4.2037 0.1145 0.0102 12 6 4.5767 -0.4611 1.2054 13 6 5.3044 -1.5755 1.2452 14 7 5.7199 -2.2067 0.0943 15 6 6.4638 -3.3452 0.1713 16 1 6.3839 -4.0956 -0.6012 17 6 7.3282 -3.5416 1.2474 18 7 7.7615 -4.7461 1.5284 19 14 7.8686 -2.0881 2.2888 20 1 6.9907 -1.9799 3.4816 21 1 9.2741 -2.2871 2.7251 22 1 7.7710 -0.8416 1.4875 23 6 5.3889 -1.6954 -1.1110 24 8 5.7476 -2.2410 -2.1375 25 6 4.5737 -0.4572 -1.1560 26 8 4.2491 0.0352 -2.2204 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2145 2.3192 0.0014 31 1 4.1493 5.3498 1.0282 32 1 4.9430 4.9485 -0.5137 33 1 3.3545 5.7517 -0.5129 34 1 5.1408 2.5871 0.0000 35 1 4.2716 0.0028 2.1319 36 1 5.5758 -1.9939 2.2033 37 1 8.3632 -4.8828 2.2768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004569949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:40 Heat of formation + Delta-G solvation = -58.302419 kcal Electronic energy + Delta-G solvation = -26813.832837 eV Core-core repulsion = 22776.175234 eV Total energy + Delta-G solvation = -4037.657603 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.071 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.94192 -41.39317 -39.66734 -39.03670 -38.63567 -37.41410 -36.44381 -34.63270 -33.10380 -32.11209 -30.43333 -28.90349 -28.53604 -26.96394 -25.44884 -24.52913 -23.48883 -22.48726 -20.58463 -19.77122 -19.68031 -18.78020 -18.16135 -17.72449 -17.65765 -16.90699 -16.81547 -16.15633 -16.06331 -15.54834 -15.48773 -15.31980 -15.15117 -14.98468 -14.80935 -14.40273 -14.31943 -13.83016 -13.53164 -13.37238 -13.26594 -12.90283 -12.80437 -12.73201 -12.59945 -12.44614 -12.33224 -11.91871 -11.88683 -11.72243 -11.65389 -10.93809 -10.61872 -10.06068 -9.25962 -8.80783 -8.77425 -6.44160 -0.27363 0.09748 0.19936 0.68588 0.92293 1.21692 1.33745 1.41236 1.50455 2.04556 2.09656 2.16552 2.28943 2.32486 2.90574 3.35004 3.56601 3.74162 3.78750 3.90531 4.06007 4.22549 4.31879 4.33400 4.45742 4.53348 4.62019 4.66665 4.74872 4.82722 4.89015 5.02421 5.14291 5.21163 5.38779 5.51391 5.59888 5.79033 6.14243 6.24632 6.40005 6.60279 6.84355 7.31502 8.35069 Molecular weight = 336.07amu Principal moments of inertia in cm(-1) A = 0.017519 B = 0.003728 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.880381 B = 7509.169816 C = 7969.785953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.144 3.856 4 C -0.186 4.186 5 C 0.011 3.989 6 Cl -0.041 7.041 7 C -0.103 4.103 8 C -0.113 4.113 9 C -0.055 4.055 10 C 0.064 3.936 11 N -0.445 5.445 12 C 0.017 3.983 13 C -0.016 4.016 14 N -0.331 5.331 15 C -0.374 4.374 16 H 0.066 0.934 17 C 0.034 3.966 18 N -0.864 5.864 19 Si 0.947 3.053 20 H -0.209 1.209 21 H -0.275 1.275 22 H -0.256 1.256 23 C 0.399 3.601 24 O -0.580 6.580 25 C 0.490 3.510 26 O -0.542 6.542 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.170 0.830 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.218 0.782 36 H 0.184 0.816 37 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.911 21.253 9.884 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.096 3.904 4 C -0.206 4.206 5 C -0.016 4.016 6 Cl -0.012 7.012 7 C -0.105 4.105 8 C -0.169 4.169 9 C -0.074 4.074 10 C -0.026 4.026 11 N -0.166 5.166 12 C -0.102 4.102 13 C -0.137 4.137 14 N -0.040 5.040 15 C -0.502 4.502 16 H 0.084 0.916 17 C -0.175 4.175 18 N -0.496 5.496 19 Si 0.767 3.233 20 H -0.132 1.132 21 H -0.201 1.201 22 H -0.180 1.180 23 C 0.191 3.809 24 O -0.463 6.463 25 C 0.280 3.720 26 O -0.418 6.418 27 H 0.131 0.869 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.187 0.813 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.168 0.832 35 H 0.235 0.765 36 H 0.200 0.800 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.814 20.973 8.739 26.591 hybrid contribution 0.284 -0.504 -0.301 0.652 sum -13.530 20.469 8.438 25.947 Atomic orbital electron populations 1.23479 0.75582 1.05854 1.03041 1.86208 1.24287 1.25990 1.87818 1.19076 0.90560 0.85560 0.95166 1.21128 1.01811 0.89118 1.08511 1.20697 0.91444 0.87944 1.01544 1.98374 1.71548 1.34797 1.96456 1.19764 0.91293 0.96900 1.02537 1.20891 1.00837 0.90907 1.04261 1.21091 1.01164 0.88902 0.96211 1.17328 0.87496 0.85981 1.11756 1.42759 1.45802 1.22551 1.05439 1.21557 1.02561 0.96298 0.89739 1.21675 1.03397 0.96613 0.92058 1.41358 1.38418 1.19987 1.04258 1.19032 1.24728 0.94704 1.11745 0.91570 1.26368 0.93638 1.00381 0.97156 1.69604 1.28923 1.23231 1.27887 0.85811 0.79558 0.78110 0.79870 1.13196 1.20073 1.18025 1.20223 0.88398 0.87518 0.84727 1.90667 1.58932 1.62239 1.34429 1.20346 0.81650 0.85753 0.84293 1.90733 1.56532 1.64454 1.30103 0.86890 0.89713 0.91529 0.81261 0.88799 0.90395 0.90210 0.83211 0.76506 0.79968 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -9.29 10.24 -92.87 -0.95 -10.24 16 3 C 0.14 3.88 6.70 22.62 0.15 4.04 16 4 C -0.19 -3.75 8.81 22.37 0.20 -3.55 16 5 C 0.01 0.20 6.31 22.34 0.14 0.34 16 6 Cl -0.04 -0.62 27.27 -2.72 -0.07 -0.70 16 7 C -0.10 -2.04 5.88 -19.84 -0.12 -2.16 16 8 C -0.11 -1.55 9.61 71.24 0.68 -0.87 16 9 C -0.05 -1.35 9.61 22.38 0.22 -1.13 16 10 C 0.06 1.93 4.49 38.25 0.17 2.11 16 11 N -0.45 -16.36 2.44 -464.55 -1.13 -17.50 16 12 C 0.02 0.53 10.25 82.61 0.85 1.37 16 13 C -0.02 -0.62 7.39 82.63 0.61 -0.01 16 14 N -0.33 -16.90 2.54 -469.38 -1.19 -18.09 16 15 C -0.37 -21.49 9.53 84.30 0.80 -20.69 16 16 H 0.07 4.45 7.79 -2.91 -0.02 4.43 16 17 C 0.03 1.76 5.32 85.09 0.45 2.21 16 18 N -0.86 -46.23 13.94 21.73 0.30 -45.93 16 19 Si 0.95 35.73 24.67 68.60 1.69 37.42 16 20 H -0.21 -6.11 6.73 99.48 0.67 -5.44 16 21 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.26 -9.82 6.91 99.48 0.69 -9.13 16 23 C 0.40 22.22 7.65 86.88 0.66 22.89 16 24 O -0.58 -37.59 16.85 11.00 0.19 -37.40 16 25 C 0.49 23.68 7.67 86.88 0.67 24.35 16 26 O -0.54 -28.80 17.04 10.91 0.19 -28.61 16 27 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 0.93 7.66 -2.39 -0.02 0.92 16 29 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 30 H 0.17 2.43 6.30 -2.91 -0.02 2.42 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 33 H 0.08 1.02 6.89 -2.39 -0.02 1.00 16 34 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.22 4.26 8.05 -2.91 -0.02 4.24 16 36 H 0.18 6.09 4.67 -2.91 -0.01 6.08 16 37 H 0.30 14.07 8.30 -92.71 -0.77 13.30 16 Total: -1.00 -81.25 334.54 6.70 -74.55 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.08 Total: 16.25 kcal Atomic # 6 Polarization: 23.64 SS G_CDS: 6.60 Total: 30.25 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -2.02 Total: -81.51 kcal Atomic # 8 Polarization: -75.68 SS G_CDS: -0.58 Total: -76.26 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 1.69 Total: 37.42 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.07 Total: -0.70 kcal Total: -81.25 6.70 -74.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004569949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.249 kcal (2) G-P(sol) polarization free energy of solvation -81.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds