Wall clock time and date at job start Tue Mar 31 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35312 * 117.00231 * 2 1 4 4 N 1.32784 * 119.98626 * 0.02562 * 3 2 1 5 5 C 1.32791 * 120.04009 * 180.02562 * 4 3 2 6 6 O 1.35315 * 119.98821 * 179.97438 * 5 4 3 7 7 C 1.42902 * 117.00085 * 0.02868 * 6 5 4 8 8 N 1.32717 * 120.02253 * 0.02562 * 5 4 3 9 9 C 1.32962 * 119.97768 * 359.97438 * 8 5 4 10 10 N 1.37995 * 120.02079 * 179.97438 * 9 8 5 11 11 C 1.46847 * 110.99925 * 179.97438 * 10 9 8 12 12 C 1.53034 * 109.51345 * 174.17031 * 11 10 9 13 13 C 1.53099 * 109.29509 * 59.18740 * 12 11 10 14 14 C 1.50697 * 109.52722 * 182.43443 * 13 12 11 15 15 O 1.21296 * 119.99571 * 119.67874 * 14 13 12 16 16 N 1.34773 * 120.00455 * 299.67714 * 14 13 12 17 17 C 1.37092 * 120.00051 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00596 * 359.97438 * 17 16 14 19 19 C 1.38958 * 119.99593 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99711 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47596 * 90.00099 * 21 19 17 23 23 H 1.48503 * 109.46785 * 210.00254 * 21 19 17 24 24 H 1.48501 * 109.47074 * 329.99702 * 21 19 17 25 25 C 1.53126 * 109.15071 * 302.33888 * 13 12 11 26 26 C 1.46854 * 110.99717 * 55.79007 * 10 9 8 27 27 N 1.32720 * 119.99026 * 180.29731 * 3 2 1 28 28 H 1.09003 * 109.46685 * 299.99910 * 1 2 3 29 29 H 1.09007 * 109.47088 * 59.99193 * 1 2 3 30 30 H 1.09001 * 109.47224 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46829 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46933 * 299.99540 * 7 6 5 33 33 H 1.09002 * 109.46946 * 59.99370 * 7 6 5 34 34 H 1.09002 * 109.46481 * 294.18183 * 11 10 9 35 35 H 1.08994 * 109.46283 * 54.16036 * 11 10 9 36 36 H 1.09007 * 109.50453 * 179.12106 * 12 11 10 37 37 H 1.09009 * 109.50412 * 299.23146 * 12 11 10 38 38 H 1.09002 * 109.57693 * 62.27167 * 13 12 11 39 39 H 0.96999 * 119.99764 * 0.02562 * 16 14 13 40 40 H 0.96998 * 119.99908 * 179.97438 * 20 19 17 41 41 H 1.08994 * 109.50076 * 297.71308 * 25 13 12 42 42 H 1.09000 * 109.50123 * 177.59308 * 25 13 12 43 43 H 1.08993 * 109.46229 * 305.85634 * 26 10 9 44 44 H 1.09008 * 109.45803 * 65.83246 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2056 0.0000 4 7 1.3199 2.3191 0.0005 5 6 1.9217 3.5028 0.0000 6 8 1.1835 4.6368 0.0000 7 6 -0.2375 4.4859 0.0012 8 7 3.2470 3.5740 -0.0015 9 6 3.9722 2.4595 -0.0021 10 7 5.3502 2.5325 -0.0042 11 6 5.9482 1.1913 -0.0038 12 6 7.4667 1.3086 -0.1527 13 6 8.0262 2.1373 1.0067 14 6 9.5135 2.3066 0.8331 15 8 9.9889 3.4173 0.7249 16 7 10.3155 1.2241 0.7982 17 6 11.6686 1.3782 0.6408 18 1 12.0920 2.3670 0.5444 19 6 12.4955 0.2620 0.6052 20 7 11.9806 -0.9412 0.7230 21 14 14.3393 0.4721 0.3915 22 1 14.9812 0.5970 1.7247 23 1 14.8935 -0.7103 -0.3159 24 1 14.6091 1.6964 -0.4045 25 6 7.3519 3.5120 1.0129 26 6 5.8366 3.3307 1.1285 27 7 3.3687 1.2748 -0.0060 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.7073 5.4694 0.0015 32 1 -0.5452 3.9362 -0.8883 33 1 -0.5438 3.9369 0.8917 34 1 5.7130 0.6890 0.9346 35 1 5.5452 0.6138 -0.8357 36 1 7.9119 0.3138 -0.1367 37 1 7.7030 1.7984 -1.0974 38 1 7.8251 1.6287 1.9496 39 1 9.9354 0.3359 0.8844 40 1 12.5578 -1.7204 0.6978 41 1 7.5863 4.0364 0.0866 42 1 7.7148 4.0915 1.8618 43 1 5.3524 4.3071 1.1192 44 1 5.6021 2.8179 2.0614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004965365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:04 Heat of formation + Delta-G solvation = -16.145671 kcal Electronic energy + Delta-G solvation = -29108.173857 eV Core-core repulsion = 24870.168172 eV Total energy + Delta-G solvation = -4238.005685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.20535 -39.88902 -39.52554 -38.59469 -37.44617 -34.30619 -33.84579 -33.51447 -31.98755 -31.19405 -30.64237 -28.39094 -27.86492 -26.23764 -24.68976 -24.51274 -22.93200 -22.79356 -20.41563 -19.56703 -19.35916 -18.84654 -17.88556 -17.61060 -17.32212 -16.85152 -16.18996 -15.90097 -15.46593 -15.16458 -14.81315 -14.64125 -14.51273 -14.42578 -14.11367 -14.00946 -13.74881 -13.09306 -12.86075 -12.65457 -12.50800 -12.44072 -12.39920 -12.05924 -11.82639 -11.55367 -11.10225 -11.07305 -11.03272 -10.73761 -10.40439 -10.37620 -10.35836 -10.13637 -10.11404 -9.98374 -9.80048 -9.49701 -8.93587 -8.31572 -7.95275 -6.40416 -3.80985 0.64063 0.80494 1.82982 2.09914 3.00809 3.19004 3.27930 3.33901 3.41596 3.68203 3.90583 4.11011 4.18540 4.66222 4.72281 4.75512 4.77842 4.79963 4.80255 4.94752 5.05810 5.09236 5.14041 5.26103 5.28495 5.38536 5.44194 5.73025 5.77353 5.77654 5.80191 5.95668 6.03505 6.17591 6.21068 6.30230 6.48380 6.54426 6.69635 6.74787 6.85476 6.94802 7.56782 8.00794 8.07501 8.62120 9.19069 9.56413 10.07502 10.77140 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024196 B = 0.002271 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.929607 B =12326.302687 C =13329.481937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.280 6.280 3 C 0.591 3.409 4 N -0.674 5.674 5 C 0.590 3.410 6 O -0.279 6.279 7 C 0.043 3.957 8 N -0.587 5.587 9 C 0.602 3.398 10 N -0.443 5.443 11 C 0.070 3.930 12 C -0.111 4.111 13 C -0.104 4.104 14 C 0.447 3.553 15 O -0.594 6.594 16 N -0.560 5.560 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.091 4.091 26 C 0.067 3.933 27 N -0.606 5.606 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.393 0.607 40 H 0.271 0.729 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.142 2.449 -0.025 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.177 6.177 3 C 0.280 3.720 4 N -0.431 5.431 5 C 0.279 3.721 6 O -0.177 6.177 7 C -0.052 4.052 8 N -0.330 5.330 9 C 0.240 3.760 10 N -0.162 5.162 11 C -0.056 4.056 12 C -0.149 4.149 13 C -0.126 4.126 14 C 0.233 3.767 15 O -0.480 6.480 16 N -0.195 5.195 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.130 4.130 26 C -0.058 4.058 27 N -0.351 5.351 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.475 3.239 -0.521 26.677 hybrid contribution -0.056 -0.976 0.378 1.048 sum -26.531 2.263 -0.143 26.627 Atomic orbital electron populations 1.23079 0.75193 1.03991 1.02997 1.86141 1.23752 1.21981 1.85846 1.20246 0.85364 0.83951 0.82431 1.68262 1.42211 0.99074 1.33520 1.20178 0.85633 0.83549 0.82708 1.86135 1.21036 1.24586 1.85922 1.23080 0.75167 1.03977 1.03017 1.67852 1.04160 1.32138 1.28836 1.20772 0.91326 0.81311 0.82630 1.58215 0.97977 1.18288 1.41728 1.22235 0.94698 0.85218 1.03484 1.21709 0.92435 1.01304 0.99465 1.21277 0.94768 0.97172 0.99343 1.19743 0.87275 0.85393 0.84331 1.90519 1.76362 1.25002 1.56096 1.41898 1.07157 1.07489 1.62982 1.19719 0.81708 0.94930 1.46642 0.87939 1.25261 1.00666 0.94638 0.97342 1.69607 1.36530 0.97811 1.50223 0.85871 0.82166 0.77884 0.78452 1.20441 1.20942 1.19417 1.21394 0.90021 0.96790 1.04759 1.22428 0.97699 0.97849 0.87826 1.68295 1.08432 1.28738 1.29588 0.91660 0.91669 0.87403 0.87390 0.91654 0.91655 0.92025 0.88790 0.89618 0.90306 0.90008 0.77378 0.91862 0.89753 0.89828 0.88244 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.39 101.05 1.05 1.31 16 2 O -0.28 -3.03 10.55 -17.63 -0.19 -3.22 16 3 C 0.59 7.58 8.55 -90.50 -0.77 6.80 16 4 N -0.67 -7.90 8.26 -16.28 -0.13 -8.03 16 5 C 0.59 7.60 8.55 -90.50 -0.77 6.83 16 6 O -0.28 -3.02 10.55 -17.64 -0.19 -3.21 16 7 C 0.04 0.26 10.39 101.05 1.05 1.31 16 8 N -0.59 -8.62 9.80 -15.52 -0.15 -8.77 16 9 C 0.60 8.82 7.19 -322.20 -2.32 6.51 16 10 N -0.44 -6.37 4.71 -175.29 -0.83 -7.20 16 11 C 0.07 0.95 4.65 -3.84 -0.02 0.94 16 12 C -0.11 -1.70 5.25 -26.66 -0.14 -1.84 16 13 C -0.10 -1.78 2.59 -91.66 -0.24 -2.02 16 14 C 0.45 10.35 7.11 -10.99 -0.08 10.27 16 15 O -0.59 -15.94 15.55 5.54 0.09 -15.85 16 16 N -0.56 -14.00 5.19 -10.97 -0.06 -14.05 16 17 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 21 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.09 -1.43 4.68 -26.64 -0.12 -1.56 16 26 C 0.07 0.90 5.33 -3.83 -0.02 0.88 16 27 N -0.61 -8.71 8.85 -15.53 -0.14 -8.85 16 28 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.11 -51.92 -0.42 -0.06 16 30 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 33 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 34 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.09 1.27 7.70 -51.93 -0.40 0.87 16 36 H 0.09 1.30 7.66 -51.93 -0.40 0.91 16 37 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.39 9.37 7.39 -40.82 -0.30 9.07 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.10 1.31 7.58 -51.93 -0.39 0.91 16 44 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -33.28 370.47 -8.99 -42.27 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.06 Total: 7.47 kcal Atomic # 6 Polarization: 24.09 SS G_CDS: -2.62 Total: 21.46 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -0.58 Total: -70.53 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.29 Total: -22.28 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.28 -8.99 -42.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004965365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.127 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds