Wall clock time and date at job start Tue Mar 31 2020 05:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35957 * 117.00086 * 2 1 4 4 C 1.38705 * 119.92410 * 0.02562 * 3 2 1 5 5 C 1.37925 * 120.14808 * 180.02562 * 4 3 2 6 6 C 1.39632 * 119.99951 * 0.02562 * 5 4 3 7 7 C 1.47720 * 120.07376 * 179.97438 * 6 5 4 8 8 N 1.31086 * 126.29975 * 179.97438 * 7 6 5 9 9 N 1.28660 * 109.41813 * 179.80284 * 8 7 6 10 10 C 1.31261 * 109.44647 * 0.38753 * 9 8 7 11 11 S 1.76193 * 126.28228 * 179.88752 * 10 9 8 12 12 C 1.81002 * 100.00049 * 359.68575 * 11 10 9 13 13 C 1.53000 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46979 * 120.00420 * 18 16 14 21 21 H 1.48498 * 109.46942 * 240.00334 * 18 16 14 22 22 O 1.34700 * 107.43344 * 359.62161 * 10 9 8 23 23 C 1.39635 * 119.84965 * 0.25271 * 6 5 4 24 24 C 1.38267 * 119.84541 * 359.49232 * 23 6 5 25 25 O 1.36003 * 119.99259 * 180.23100 * 24 23 6 26 26 C 1.42897 * 117.00513 * 0.27776 * 25 24 23 27 27 H 1.08991 * 109.47393 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46823 * 299.99382 * 1 2 3 29 29 H 1.08997 * 109.47646 * 59.99066 * 1 2 3 30 30 H 1.07993 * 119.92746 * 0.04162 * 4 3 2 31 31 H 1.08000 * 120.00119 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47115 * 60.00094 * 12 11 10 33 33 H 1.09001 * 109.46925 * 300.00251 * 12 11 10 34 34 H 1.09001 * 109.47194 * 299.99731 * 13 12 11 35 35 H 1.08992 * 109.47399 * 59.99903 * 13 12 11 36 36 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.07619 * 179.73172 * 23 6 5 38 38 H 1.08995 * 109.47209 * 179.97438 * 26 25 24 39 39 H 1.08998 * 109.46898 * 300.00070 * 26 25 24 40 40 H 1.09007 * 109.46911 * 59.99942 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2893 2.3737 0.0005 5 6 1.9107 3.6050 0.0000 6 6 3.3048 3.6835 -0.0016 7 6 3.9720 5.0014 -0.0028 8 7 5.2651 5.2166 -0.0038 9 7 5.4878 6.4838 -0.0088 10 6 4.3445 7.1285 -0.0027 11 16 4.1338 8.8778 -0.0032 12 6 5.8660 9.4030 -0.0042 13 6 5.9355 10.9314 -0.0041 14 6 7.3777 11.3686 -0.0042 15 1 8.1658 10.6301 -0.0048 16 6 7.6911 12.7113 -0.0047 17 7 6.7314 13.6105 -0.0045 18 14 9.4787 13.2532 -0.0042 19 1 10.3586 12.0570 -0.0038 20 1 9.7499 14.0663 -1.2169 21 1 9.7488 14.0672 1.2081 22 8 3.3617 6.2073 -0.0020 23 6 4.0668 2.5134 -0.0080 24 6 3.4373 1.2823 -0.0021 25 8 4.1766 0.1408 -0.0036 26 6 5.5979 0.2882 -0.0052 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 0.2110 2.3144 0.0016 31 1 1.3190 4.5085 0.0008 32 1 6.3624 9.0163 -0.8942 33 1 6.3632 9.0169 0.8857 34 1 5.4383 11.3178 -0.8938 35 1 5.4393 11.3176 0.8861 36 1 6.9518 14.5551 -0.0053 37 1 5.1453 2.5699 -0.0137 38 1 6.0653 -0.6965 -0.0058 39 1 5.9052 0.8372 -0.8953 40 1 5.9074 0.8363 0.8847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005019243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:09 Heat of formation + Delta-G solvation = -10.273307 kcal Electronic energy + Delta-G solvation = -24708.399858 eV Core-core repulsion = 20810.701754 eV Total energy + Delta-G solvation = -3897.698104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.92407 -40.97431 -38.88517 -37.45511 -36.11101 -33.86176 -32.48808 -31.07461 -30.86874 -29.77833 -27.76803 -27.61437 -25.50084 -24.50223 -23.85445 -22.34821 -21.92890 -21.27487 -19.18158 -18.30354 -17.69623 -17.34519 -17.08700 -16.66513 -16.49329 -16.13801 -15.63878 -15.56227 -15.17570 -14.90889 -14.56620 -14.02876 -13.97347 -13.57951 -13.22727 -13.09467 -12.62471 -12.40542 -12.31045 -12.02538 -11.85200 -11.81734 -11.71536 -11.64384 -11.57783 -11.20622 -11.14106 -10.69639 -10.61220 -10.26565 -10.20146 -9.82675 -9.27369 -9.19892 -8.52098 -8.33511 -7.51854 -6.15904 -4.20595 0.22580 0.81125 0.85281 1.45046 2.40421 2.40790 2.66321 2.79228 2.87782 3.25257 3.29343 3.33198 3.38119 4.00415 4.32096 4.36174 4.47092 4.57279 4.72300 4.72324 4.77638 4.88599 4.89635 5.03109 5.05796 5.11088 5.20507 5.20738 5.23901 5.31202 5.61776 5.73484 5.81206 5.97063 6.00227 6.05673 6.50452 6.57207 7.08336 7.35831 7.40769 7.79467 8.13515 8.22183 8.83939 9.44346 10.94942 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.027076 B = 0.001913 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.894356 B =14630.680616 C =15633.521365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.302 6.302 3 C 0.120 3.880 4 C -0.174 4.174 5 C -0.079 4.079 6 C -0.011 4.011 7 C 0.191 3.809 8 N -0.264 5.264 9 N -0.289 5.289 10 C 0.151 3.849 11 S 0.038 5.962 12 C -0.089 4.089 13 C 0.036 3.964 14 C -0.519 4.519 15 H 0.063 0.937 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.900 3.100 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 O -0.206 6.206 23 C -0.126 4.126 24 C 0.101 3.899 25 O -0.303 6.303 26 C 0.022 3.978 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.145 0.855 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.031 0.969 35 H 0.031 0.969 36 H 0.264 0.736 37 H 0.153 0.847 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 -26.767 0.008 29.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.074 3.926 4 C -0.193 4.193 5 C -0.099 4.099 6 C -0.013 4.013 7 C -0.021 4.021 8 N -0.112 5.112 9 N -0.141 5.141 10 C -0.164 4.164 11 S 0.271 5.729 12 C -0.237 4.237 13 C -0.004 4.004 14 C -0.559 4.559 15 H 0.081 0.919 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 O -0.088 6.088 23 C -0.146 4.146 24 C 0.055 3.945 25 O -0.217 6.217 26 C -0.073 4.073 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.163 0.837 31 H 0.157 0.843 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.171 0.829 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.823 -26.496 0.004 29.436 hybrid contribution 0.738 0.246 0.003 0.778 sum -12.085 -26.250 0.006 28.898 Atomic orbital electron populations 1.23148 0.78143 1.04334 1.01560 1.86190 1.21376 1.25631 1.88330 1.18441 0.89130 0.85406 0.99667 1.20960 1.00417 0.90684 1.07194 1.20983 0.92549 0.98224 0.98131 1.16766 0.92250 0.85227 1.07088 1.25185 0.88087 0.85828 1.03021 1.74408 1.12276 1.08732 1.15760 1.74996 1.21595 0.97519 1.20035 1.30539 0.83872 1.00381 1.01621 1.86259 1.17664 0.79729 1.89251 1.24278 0.88583 1.04451 1.06402 1.19023 0.98741 0.83756 0.98897 1.21053 0.90854 0.91959 1.52049 0.91873 1.25010 0.97828 0.96563 0.94809 1.69962 1.31930 1.01200 1.49813 0.86402 0.84382 0.78773 0.77707 1.19509 1.20837 1.20832 1.85004 1.37785 1.14832 1.71173 1.21029 1.01275 0.89170 1.03132 1.17937 0.88249 0.85862 1.02461 1.86184 1.19164 1.27367 1.88965 1.23170 0.78006 1.04226 1.01927 0.87945 0.92367 0.92371 0.83700 0.84323 0.89085 0.89094 0.95107 0.95104 0.92680 0.82926 0.87868 0.92226 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.78 10.27 -34.29 -0.35 -3.13 16 3 C 0.12 1.18 6.70 -39.02 -0.26 0.92 16 4 C -0.17 -1.42 9.02 -39.52 -0.36 -1.78 16 5 C -0.08 -0.77 9.72 -39.18 -0.38 -1.15 16 6 C -0.01 -0.13 5.87 -104.98 -0.62 -0.75 16 7 C 0.19 2.92 7.98 -14.00 -0.11 2.81 16 8 N -0.26 -4.60 11.89 32.08 0.38 -4.21 16 9 N -0.29 -5.49 11.62 30.32 0.35 -5.14 16 10 C 0.15 2.68 8.53 52.52 0.45 3.13 16 11 S 0.04 0.67 22.31 -107.50 -2.40 -1.73 16 12 C -0.09 -1.80 5.16 37.16 0.19 -1.60 16 13 C 0.04 0.87 4.98 -27.88 -0.14 0.73 16 14 C -0.52 -13.98 9.11 -34.44 -0.31 -14.29 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 18 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 O -0.21 -3.33 10.69 2.23 0.02 -3.31 16 23 C -0.13 -1.39 8.68 -39.05 -0.34 -1.73 16 24 C 0.10 1.08 6.69 -39.18 -0.26 0.81 16 25 O -0.30 -3.15 10.27 -34.43 -0.35 -3.50 16 26 C 0.02 0.15 9.81 101.05 0.99 1.14 16 27 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.15 0.75 6.27 -52.49 -0.33 0.42 16 31 H 0.14 1.19 7.92 -52.49 -0.42 0.77 16 32 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 33 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.15 1.60 6.08 -52.49 -0.32 1.28 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 40 H 0.06 0.39 7.67 -51.92 -0.40 -0.01 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -31.83 364.51 -6.13 -37.96 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -4.73 Total: -4.44 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.26 Total: -9.09 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 1.47 Total: -34.20 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.68 Total: -9.94 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.40 Total: -1.73 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.83 -6.13 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005019243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.683 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds