Wall clock time and date at job start Tue Mar 31 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00062 * 2 1 4 4 C 1.50703 * 109.47055 * 270.00084 * 3 2 1 5 5 H 1.08001 * 119.99697 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00119 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99884 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00019 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47560 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47102 * 120.00140 * 8 6 4 11 11 H 1.48500 * 109.47484 * 239.99953 * 8 6 4 12 12 C 1.39472 * 120.00095 * 179.97438 * 2 1 3 13 13 C 1.39091 * 119.91808 * 0.02562 * 12 2 1 14 14 C 1.37742 * 120.08352 * 179.97438 * 13 12 2 15 15 C 1.39777 * 119.91428 * 359.97438 * 14 13 12 16 16 C 1.47383 * 120.07681 * 180.02562 * 15 14 13 17 17 N 1.29829 * 119.99442 * 180.02562 * 16 15 14 18 18 N 1.40100 * 119.99588 * 180.02562 * 17 16 15 19 19 C 1.34780 * 120.00019 * 179.97438 * 18 17 16 20 20 O 1.21601 * 119.99969 * 0.02562 * 19 18 17 21 21 C 1.47791 * 119.99886 * 179.97438 * 19 18 17 22 22 C 1.39605 * 120.14155 * 180.02562 * 21 19 18 23 23 C 1.37956 * 119.84402 * 179.97438 * 22 21 19 24 24 C 1.38355 * 120.15270 * 359.97438 * 23 22 21 25 25 C 1.38367 * 120.29617 * 0.04419 * 24 23 22 26 26 C 1.37953 * 120.14734 * 359.95886 * 25 24 23 27 27 C 1.39771 * 119.83894 * 0.27430 * 15 14 13 28 28 C 1.37741 * 119.91787 * 359.45188 * 27 15 14 29 29 H 1.09002 * 109.46803 * 269.99612 * 1 2 3 30 30 H 1.08995 * 109.47046 * 30.00296 * 1 2 3 31 31 H 1.09000 * 109.46810 * 149.99983 * 1 2 3 32 32 H 1.08995 * 109.47018 * 29.99841 * 3 2 1 33 33 H 1.08995 * 109.46945 * 150.00109 * 3 2 1 34 34 H 0.96994 * 119.99979 * 179.97438 * 7 6 4 35 35 H 1.08002 * 119.95866 * 359.95345 * 13 12 2 36 36 H 1.08003 * 120.03778 * 180.02562 * 14 13 12 37 37 H 1.07996 * 120.00098 * 0.02562 * 16 15 14 38 38 H 0.97006 * 120.00568 * 0.02562 * 18 17 16 39 39 H 1.07998 * 120.08040 * 359.69996 * 22 21 19 40 40 H 1.08000 * 119.91820 * 180.02562 * 23 22 21 41 41 H 1.08003 * 119.85668 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.92480 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.07394 * 180.02562 * 26 25 24 44 44 H 1.08004 * 120.04314 * 179.70002 * 27 15 14 45 45 H 1.08004 * 119.96008 * 180.30055 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.8608 2.4163 -4.3674 10 1 2.7998 4.7372 -3.6680 11 1 4.9005 3.5257 -3.6667 12 6 2.1624 -1.2078 0.0005 13 6 1.4652 -2.4114 0.0005 14 6 2.1505 -3.6063 0.0005 15 6 3.5483 -3.6082 0.0000 16 6 4.2852 -4.8846 -0.0006 17 7 5.5835 -4.8845 -0.0006 18 7 6.2839 -6.0978 -0.0017 19 6 7.6317 -6.0978 -0.0022 20 8 8.2397 -5.0448 -0.0012 21 6 8.3706 -7.3778 -0.0028 22 6 9.7667 -7.3813 -0.0028 23 6 10.4502 -8.5796 -0.0028 24 6 9.7554 -9.7760 -0.0022 25 6 8.3717 -9.7796 -0.0026 26 6 7.6758 -8.5885 -0.0027 27 6 4.2454 -2.3968 0.0053 28 6 3.5533 -1.2059 -0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6085 2.0283 0.5138 33 1 3.1499 1.1383 0.5138 34 1 4.0302 4.4439 -0.8504 35 1 0.3852 -2.4091 0.0009 36 1 1.6084 -4.5404 0.0001 37 1 3.7452 -5.8199 -0.0010 38 1 5.7990 -6.9380 -0.0028 39 1 10.3103 -6.4481 -0.0072 40 1 11.5302 -8.5837 -0.0023 41 1 10.2953 -10.7114 -0.0018 42 1 7.8354 -10.7170 -0.0026 43 1 6.5958 -8.5927 -0.0026 44 1 5.3254 -2.3944 0.0098 45 1 4.0913 -0.2694 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005393767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:44 Heat of formation + Delta-G solvation = 71.248577 kcal Electronic energy + Delta-G solvation = -26325.675591 eV Core-core repulsion = 22502.308868 eV Total energy + Delta-G solvation = -3823.366723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.35039 -39.07620 -38.48282 -36.71596 -35.45949 -33.00829 -32.55095 -31.38351 -31.12098 -30.60745 -28.87197 -27.83833 -25.52593 -24.37478 -23.30876 -22.83716 -21.96887 -21.26915 -20.65791 -19.70074 -18.43060 -17.06197 -16.79179 -16.54142 -16.41440 -15.60660 -15.21025 -15.15794 -14.91400 -14.66621 -14.28710 -14.10573 -13.88137 -13.82891 -13.79406 -13.19643 -13.01351 -12.79692 -12.64982 -12.19677 -12.09473 -11.76532 -11.58453 -11.52991 -11.33986 -11.28357 -10.95447 -10.74065 -10.40474 -10.21234 -10.08421 -9.99245 -9.82288 -9.47508 -9.43422 -9.36902 -8.53662 -8.47683 -8.38959 -6.51179 -6.05786 -4.20280 0.41690 0.91249 1.33292 2.05770 2.40423 2.54366 2.98374 3.25726 3.34361 3.38470 3.55173 4.02937 4.22805 4.33703 4.38941 4.47338 4.52373 4.66746 4.76650 4.90781 4.99567 5.05579 5.19720 5.32338 5.39833 5.47378 5.52314 5.69293 5.80204 5.85810 5.93857 5.96660 5.98942 5.99732 6.15967 6.25548 6.33290 6.41831 6.54499 6.85471 6.90321 6.98617 7.05120 7.17314 7.29086 7.45985 7.55475 7.77948 8.08957 8.15395 8.34275 8.37260 8.87970 9.46930 10.93356 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.001957 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.002781 B =14302.266418 C =15685.834282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.605 5.605 3 C 0.244 3.756 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.281 1.281 12 C 0.261 3.739 13 C -0.229 4.229 14 C -0.036 4.036 15 C -0.159 4.159 16 C 0.146 3.854 17 N -0.258 5.258 18 N -0.583 5.583 19 C 0.572 3.428 20 O -0.500 6.500 21 C -0.128 4.128 22 C -0.057 4.057 23 C -0.126 4.126 24 C -0.095 4.095 25 C -0.127 4.127 26 C -0.089 4.089 27 C -0.024 4.024 28 C -0.196 4.196 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.378 0.622 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.770 -27.131 2.998 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.308 5.308 3 C 0.125 3.875 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.207 1.207 12 C 0.150 3.850 13 C -0.252 4.252 14 C -0.058 4.058 15 C -0.164 4.164 16 C -0.062 4.062 17 N -0.063 5.063 18 N -0.325 5.325 19 C 0.360 3.640 20 O -0.373 6.373 21 C -0.132 4.132 22 C -0.076 4.076 23 C -0.144 4.144 24 C -0.114 4.114 25 C -0.145 4.145 26 C -0.108 4.108 27 C -0.045 4.045 28 C -0.219 4.219 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.216 0.784 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.105 -25.526 3.046 26.209 hybrid contribution -0.801 -0.713 -1.027 1.485 sum 4.305 -26.240 2.019 26.667 Atomic orbital electron populations 1.21558 0.81172 1.02256 1.00031 1.47246 1.04750 1.04883 1.73898 1.19395 0.92271 0.78550 0.97312 1.21571 1.36697 1.06524 0.92461 0.92097 1.24963 0.95302 0.96271 0.97509 1.69933 1.38138 1.14345 1.30750 0.86451 0.78167 0.78406 0.84518 1.19711 1.20962 1.20739 1.18173 0.91624 0.86083 0.89101 1.20467 0.99248 0.91066 1.14432 1.20701 0.92204 0.97067 0.95787 1.17840 0.92202 0.90120 1.16287 1.24465 0.90307 0.97650 0.93819 1.75149 1.09253 1.05248 1.16619 1.46811 1.06548 1.05124 1.73981 1.18006 0.80228 0.89104 0.76690 1.90821 1.67357 1.32607 1.46536 1.19887 0.94577 0.92255 1.06493 1.21347 0.92546 0.99313 0.94411 1.21206 1.00518 0.91998 1.00696 1.21414 0.94420 0.98425 0.97104 1.21116 0.94506 0.97922 1.00969 1.21329 0.99712 0.91922 0.97800 1.21099 0.99774 0.90763 0.92825 1.20907 0.92472 0.99123 1.09377 0.94201 0.91161 0.92389 0.94917 0.94279 0.92607 0.86258 0.86643 0.87448 0.78368 0.84288 0.85058 0.85442 0.85268 0.85773 0.85588 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.53 10.18 59.85 0.61 2.14 16 2 N -0.60 -12.39 2.99 -180.95 -0.54 -12.93 16 3 C 0.24 5.99 4.90 -5.19 -0.03 5.96 16 4 C -0.53 -14.38 9.39 -34.44 -0.32 -14.70 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.26 5.05 6.56 -83.75 -0.55 4.50 16 13 C -0.23 -3.63 9.19 -39.45 -0.36 -3.99 16 14 C -0.04 -0.50 9.78 -39.19 -0.38 -0.89 16 15 C -0.16 -2.45 5.87 -105.03 -0.62 -3.06 16 16 C 0.15 1.92 10.75 -14.68 -0.16 1.76 16 17 N -0.26 -4.01 10.15 32.15 0.33 -3.68 16 18 N -0.58 -7.35 6.21 30.52 0.19 -7.16 16 19 C 0.57 8.06 7.89 -12.35 -0.10 7.96 16 20 O -0.50 -9.28 16.69 5.28 0.09 -9.19 16 21 C -0.13 -1.33 5.87 -104.97 -0.62 -1.94 16 22 C -0.06 -0.55 9.60 -39.17 -0.38 -0.92 16 23 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16 24 C -0.10 -0.56 10.04 -39.49 -0.40 -0.96 16 25 C -0.13 -0.76 10.03 -39.64 -0.40 -1.15 16 26 C -0.09 -0.65 9.54 -39.18 -0.37 -1.03 16 27 C -0.02 -0.43 9.57 -39.19 -0.37 -0.80 16 28 C -0.20 -3.96 9.19 -39.45 -0.36 -4.32 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 0.82 6.18 -51.93 -0.32 0.50 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.02 6.18 -51.93 -0.32 0.70 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.12 1.64 6.12 -52.49 -0.32 1.32 16 36 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 37 H 0.11 0.96 8.02 -52.49 -0.42 0.54 16 38 H 0.38 3.17 6.69 -182.59 -1.22 1.95 16 39 H 0.14 1.39 7.65 -52.49 -0.40 0.99 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 42 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.12 0.62 6.41 -52.48 -0.34 0.28 16 44 H 0.13 2.35 7.55 -52.48 -0.40 1.95 16 45 H 0.14 3.06 6.12 -52.48 -0.32 2.74 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -33.67 387.54 -10.24 -43.91 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.56 Total: 2.75 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -5.30 Total: -11.11 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.71 Total: -48.55 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.67 -10.24 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005393767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.155 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds