Wall clock time and date at job start Tue Mar 31 2020 05:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.46746 * 2 1 4 4 C 1.34861 * 116.99855 * 179.97438 * 3 2 1 5 5 O 1.21605 * 120.00089 * 0.02562 * 4 3 2 6 6 C 1.46660 * 119.99979 * 180.02562 * 4 3 2 7 7 C 1.37848 * 122.77125 * 269.98292 * 6 4 3 8 8 N 1.37372 * 125.37736 * 359.96955 * 7 6 4 9 9 C 1.34776 * 120.00455 * 180.02562 * 8 7 6 10 10 O 1.21874 * 119.99585 * 359.97438 * 9 8 7 11 11 C 1.41043 * 120.00030 * 180.02562 * 9 8 7 12 12 H 1.07992 * 120.00076 * 6.42064 * 11 9 8 13 13 C 1.40164 * 119.99568 * 186.42283 * 11 9 8 14 14 N 1.30621 * 119.99629 * 184.68968 * 13 11 9 15 15 Si 1.86799 * 120.00017 * 4.41460 * 13 11 9 16 16 H 1.48504 * 109.46847 * 180.27799 * 15 13 11 17 17 H 1.48504 * 109.47062 * 300.27336 * 15 13 11 18 18 H 1.48498 * 109.47327 * 60.27877 * 15 13 11 19 19 S 1.75622 * 109.25219 * 180.23761 * 7 6 4 20 20 C 1.75789 * 91.57485 * 359.70254 * 19 7 6 21 21 C 1.34753 * 110.77413 * 0.31097 * 20 19 7 22 22 C 1.52342 * 122.94741 * 179.73007 * 21 20 19 23 23 C 1.52946 * 108.83833 * 17.39719 * 22 21 20 24 24 C 1.53150 * 109.23952 * 308.88327 * 23 22 21 25 25 H 1.09001 * 109.55969 * 310.83761 * 24 23 22 26 26 C 1.52997 * 109.64916 * 190.56831 * 24 23 22 27 27 C 1.51641 * 124.71880 * 180.02562 * 20 19 7 28 28 H 1.08997 * 109.47247 * 299.99283 * 1 2 3 29 29 H 1.08998 * 109.47471 * 60.00023 * 1 2 3 30 30 H 1.09002 * 109.46586 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47247 * 240.00717 * 2 1 3 32 32 H 1.08998 * 109.47471 * 119.99977 * 2 1 3 33 33 H 0.97003 * 119.99672 * 0.02562 * 8 7 6 34 34 H 0.97007 * 120.00143 * 354.63063 * 14 13 11 35 35 H 1.08998 * 109.57491 * 137.21418 * 22 21 20 36 36 H 1.09004 * 109.57918 * 257.60401 * 22 21 20 37 37 H 1.09005 * 109.51318 * 188.95088 * 23 22 21 38 38 H 1.09006 * 109.54365 * 68.83519 * 23 22 21 39 39 H 1.09000 * 109.46993 * 300.48279 * 26 24 23 40 40 H 1.09009 * 109.46734 * 60.47963 * 26 24 23 41 41 H 1.08999 * 109.47793 * 180.48095 * 26 24 23 42 42 H 1.09006 * 109.58739 * 316.57815 * 27 20 19 43 43 H 1.09005 * 109.58477 * 77.00917 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3509 1.5458 0.0005 5 8 4.0917 0.5814 0.0005 6 6 3.9114 2.9010 0.0011 7 6 4.1973 3.5907 -1.1576 8 7 4.0032 3.1183 -2.4329 9 6 4.3225 3.8875 -3.4925 10 8 4.7829 5.0026 -3.3192 11 6 4.1227 3.4025 -4.8017 12 1 3.6194 2.4598 -4.9574 13 6 4.5775 4.1441 -5.9007 14 7 4.3126 3.7417 -7.1148 15 14 5.5558 5.7121 -5.6290 16 1 5.9105 6.3080 -6.9422 17 1 4.7377 6.6777 -4.8520 18 1 6.7969 5.3971 -4.8770 19 16 4.8560 5.1660 -0.7464 20 6 4.7098 4.8320 0.9733 21 6 4.2008 3.6015 1.1796 22 6 3.9629 3.0257 2.5698 23 6 3.9678 4.1692 3.5855 24 6 5.2301 5.0137 3.3885 25 1 6.1024 4.3615 3.3447 26 6 5.3810 5.9931 4.5542 27 6 5.1080 5.7930 2.0766 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.6364 2.2309 -2.5707 34 1 3.8695 2.8907 -7.2579 35 1 2.9982 2.5188 2.5950 36 1 4.7558 2.3182 2.8128 37 1 3.9580 3.7592 4.5954 38 1 3.0859 4.7925 3.4371 39 1 4.5064 6.6421 4.5989 40 1 5.4686 5.4365 5.4873 41 1 6.2754 6.5984 4.4068 42 1 6.0663 6.2520 1.8333 43 1 4.3462 6.5657 2.1807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005474093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:28 Heat of formation + Delta-G solvation = -139.094218 kcal Electronic energy + Delta-G solvation = -27207.344277 eV Core-core repulsion = 23342.174512 eV Total energy + Delta-G solvation = -3865.169765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38584 -38.98533 -38.65745 -36.45972 -35.61049 -33.68647 -33.26253 -31.71459 -30.88945 -29.66184 -27.40225 -25.64483 -24.92346 -23.07167 -22.40521 -21.34115 -20.67245 -20.09804 -18.75443 -18.04049 -17.55439 -16.93690 -16.59902 -16.07367 -15.31945 -15.23839 -14.51680 -14.31527 -14.17520 -13.94233 -13.81023 -13.73528 -13.39412 -13.27182 -13.03309 -12.79163 -12.60809 -12.48026 -12.24531 -12.10602 -11.90015 -11.82101 -11.60629 -11.44964 -10.98016 -10.69313 -10.67845 -10.53339 -10.49916 -10.47295 -10.22501 -9.91145 -9.70640 -9.56236 -9.26958 -8.24164 -7.88679 -7.46236 -7.18396 -5.46833 1.44614 1.81100 2.28627 2.55304 2.70025 3.15269 3.34890 3.49768 3.80069 4.03063 4.05170 4.36368 4.75467 4.79656 4.84521 4.86042 4.90957 5.09792 5.11750 5.12881 5.19482 5.40204 5.45599 5.58623 5.62163 5.66038 5.68294 5.70418 5.72430 5.77268 5.89370 5.91955 5.98417 6.05873 6.11742 6.19352 6.40256 6.50550 6.59988 6.88202 7.03390 7.21569 7.29097 7.55719 7.95102 8.32201 8.36260 9.45822 9.87776 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.004712 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.005035 B = 5941.473682 C = 8429.539236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.352 6.352 4 C 0.547 3.453 5 O -0.505 6.505 6 C -0.252 4.252 7 C 0.137 3.863 8 N -0.638 5.638 9 C 0.525 3.475 10 O -0.592 6.592 11 C -0.568 4.568 12 H 0.077 0.923 13 C 0.064 3.936 14 N -0.798 5.798 15 Si 1.127 2.873 16 H -0.317 1.317 17 H -0.273 1.273 18 H -0.284 1.284 19 S 0.266 5.734 20 C -0.285 4.285 21 C -0.036 4.036 22 C -0.060 4.060 23 C -0.108 4.108 24 C -0.089 4.089 25 H 0.073 0.927 26 C -0.145 4.145 27 C -0.027 4.027 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.405 0.595 34 H 0.285 0.715 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 -1.329 18.125 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.269 6.269 4 C 0.389 3.611 5 O -0.392 6.392 6 C -0.268 4.268 7 C -0.087 4.087 8 N -0.275 5.275 9 C 0.342 3.658 10 O -0.488 6.488 11 C -0.602 4.602 12 H 0.095 0.905 13 C -0.159 4.159 14 N -0.422 5.422 15 Si 0.957 3.043 16 H -0.248 1.248 17 H -0.199 1.199 18 H -0.211 1.211 19 S 0.528 5.472 20 C -0.402 4.402 21 C -0.047 4.047 22 C -0.100 4.100 23 C -0.146 4.146 24 C -0.109 4.109 25 H 0.091 0.909 26 C -0.203 4.203 27 C -0.066 4.066 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.240 0.760 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.044 1.433 16.384 16.573 hybrid contribution -1.692 -3.794 1.284 4.348 sum -3.735 -2.362 17.668 18.212 Atomic orbital electron populations 1.21792 0.92732 1.02707 1.03617 1.23014 0.95385 0.80881 1.02419 1.86773 1.24619 1.31539 1.83956 1.20653 0.80036 0.89368 0.71075 1.90834 1.60529 1.42796 1.45085 1.17474 1.21055 0.95928 0.92374 1.22477 0.99162 0.99153 0.87939 1.43035 1.62822 1.19616 1.01986 1.17188 0.79534 0.84395 0.84695 1.90108 1.55180 1.21266 1.82279 1.21110 1.38828 1.09626 0.90666 0.90467 1.27556 0.93452 1.04354 0.90494 1.70605 1.28740 1.20256 1.22622 0.82395 0.76441 0.73446 0.71994 1.24776 1.19931 1.21105 1.85280 1.60760 1.08329 0.92870 1.25218 1.13897 0.99829 1.01234 1.18651 1.00357 0.92721 0.92957 1.20539 1.01536 0.97460 0.90426 1.21546 0.98208 0.96754 0.98087 1.21149 0.98550 0.96986 0.94183 0.90891 1.21824 1.01722 0.99117 0.97617 1.20138 1.00906 0.95198 0.90370 0.91536 0.91373 0.90422 0.91340 0.91420 0.75958 0.90405 0.91385 0.90911 0.91824 0.91567 0.92635 0.92759 0.92630 0.91163 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.72 6.20 37.16 0.23 0.95 16 3 O -0.35 -5.76 10.23 -40.93 -0.42 -6.17 16 4 C 0.55 10.11 6.22 34.13 0.21 10.33 16 5 O -0.51 -10.18 16.90 -19.35 -0.33 -10.51 16 6 C -0.25 -4.81 5.73 -105.94 -0.61 -5.41 16 7 C 0.14 2.87 7.16 -15.21 -0.11 2.76 16 8 N -0.64 -14.21 5.31 -13.27 -0.07 -14.28 16 9 C 0.52 13.29 7.34 -15.20 -0.11 13.18 16 10 O -0.59 -15.55 9.33 5.03 0.05 -15.51 16 11 C -0.57 -14.96 9.71 -37.80 -0.37 -15.33 16 12 H 0.08 1.99 8.05 -52.49 -0.42 1.57 16 13 C 0.06 1.71 5.52 -17.34 -0.10 1.61 16 14 N -0.80 -21.26 13.64 55.56 0.76 -20.50 16 15 Si 1.13 27.58 25.95 -169.99 -4.41 23.17 16 16 H -0.32 -7.48 7.11 56.52 0.40 -7.08 16 17 H -0.27 -6.80 6.77 56.52 0.38 -6.42 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 S 0.27 5.13 20.31 -107.50 -2.18 2.95 16 20 C -0.28 -4.61 6.34 -35.08 -0.22 -4.83 16 21 C -0.04 -0.60 5.80 -104.34 -0.60 -1.20 16 22 C -0.06 -0.82 5.63 -27.10 -0.15 -0.97 16 23 C -0.11 -1.18 5.20 -26.68 -0.14 -1.32 16 24 C -0.09 -0.95 2.71 -90.50 -0.25 -1.20 16 25 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 26 C -0.15 -1.22 9.18 37.16 0.34 -0.88 16 27 C -0.03 -0.34 5.55 -27.38 -0.15 -0.49 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.40 8.36 8.12 -40.82 -0.33 8.03 16 34 H 0.28 7.23 8.72 -40.82 -0.36 6.88 16 35 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.58 8.11 -51.93 -0.42 0.15 16 38 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 LS Contribution 367.95 15.07 5.54 5.54 Total: -1.00 -29.70 367.95 -8.95 -38.65 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.25 Total: 0.51 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.64 Total: -3.85 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.69 Total: -34.78 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.70 Total: -32.19 kcal Atomic # 14 Polarization: 27.58 SS G_CDS: -4.41 Total: 23.17 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -2.18 Total: 2.95 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.70 -8.95 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005474093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.441 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds