Wall clock time and date at job start Tue Mar 31 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34862 * 117.00048 * 2 1 4 4 O 1.21612 * 119.99772 * 0.02562 * 3 2 1 5 5 C 1.46649 * 119.99961 * 180.02562 * 3 2 1 6 6 C 1.37280 * 122.49599 * 89.98230 * 5 3 2 7 7 N 1.37367 * 125.48331 * 358.73729 * 6 5 3 8 8 C 1.34775 * 119.99969 * 179.97438 * 7 6 5 9 9 O 1.21873 * 120.00134 * 0.02562 * 8 7 6 10 10 C 1.41040 * 119.99778 * 180.02562 * 8 7 6 11 11 H 1.07998 * 119.99950 * 359.97438 * 10 8 7 12 12 C 1.40161 * 119.99997 * 180.02562 * 10 8 7 13 13 N 1.30624 * 119.99742 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00054 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47504 * 59.99606 * 14 12 10 16 16 H 1.48507 * 109.47083 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47063 * 299.99429 * 14 12 10 18 18 S 1.75419 * 109.03681 * 178.74536 * 6 5 3 19 19 C 1.76452 * 91.45724 * 358.14073 * 18 6 5 20 20 C 1.33712 * 111.25317 * 4.71745 * 19 18 6 21 21 C 1.52713 * 129.02714 * 172.98334 * 20 19 18 22 22 C 1.52294 * 112.70560 * 359.20268 * 21 20 19 23 23 C 1.51810 * 111.90155 * 79.41704 * 22 21 20 24 24 C 1.51509 * 113.56744 * 321.02624 * 23 22 21 25 25 C 1.53217 * 105.43633 * 277.12622 * 24 23 22 26 26 C 1.51964 * 122.29165 * 185.63399 * 19 18 6 27 27 H 1.09001 * 109.47241 * 59.99919 * 1 2 3 28 28 H 1.08996 * 109.46632 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46521 * 299.99286 * 1 2 3 30 30 H 0.96995 * 119.99906 * 359.97438 * 7 6 5 31 31 H 0.97006 * 119.99631 * 180.02562 * 13 12 10 32 32 H 1.09003 * 108.83267 * 238.37420 * 21 20 19 33 33 H 1.08995 * 108.75105 * 119.97971 * 21 20 19 34 34 H 1.08997 * 108.99417 * 318.78855 * 22 21 20 35 35 H 1.09004 * 108.99123 * 200.04258 * 22 21 20 36 36 H 1.08998 * 108.66350 * 199.96676 * 23 22 21 37 37 H 1.09003 * 108.55672 * 82.01011 * 23 22 21 38 38 H 1.09000 * 110.24599 * 158.14742 * 24 23 22 39 39 H 1.08997 * 110.24539 * 36.10387 * 24 23 22 40 40 H 1.09002 * 109.59656 * 182.48595 * 25 24 23 41 41 H 1.09003 * 109.59467 * 302.78997 * 25 24 23 42 42 H 1.09002 * 109.96929 * 341.77238 * 26 19 18 43 43 H 1.08995 * 109.74717 * 220.88627 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2016 0.0000 4 8 1.4019 2.2215 0.0005 5 6 3.5288 1.2784 -0.0006 6 6 4.2649 1.3168 -1.1587 7 7 3.7516 1.2651 -2.4318 8 6 4.5792 1.3118 -3.4945 9 8 5.7830 1.3993 -3.3260 10 6 4.0521 1.2592 -4.8016 11 1 2.9853 1.1812 -4.9510 12 6 4.9128 1.3072 -5.9068 13 7 6.2030 1.4010 -5.7261 14 14 4.2146 1.2384 -7.6381 15 1 3.2970 2.3869 -7.8479 16 1 5.3245 1.3058 -8.6224 17 1 3.4673 -0.0320 -7.8203 18 16 5.9665 1.4424 -0.7513 19 6 5.5960 1.4939 0.9731 20 6 4.2890 1.3179 1.1936 21 6 3.5522 1.1454 2.5201 22 6 4.4893 1.1690 3.7204 23 6 4.8857 2.5840 4.1015 24 6 5.1292 3.4868 2.9094 25 6 6.5672 3.1981 2.4662 26 6 6.6650 1.7340 2.0263 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 2.7935 1.1951 -2.5660 31 1 6.7987 1.4346 -6.4910 32 1 3.0216 0.1934 2.5066 33 1 2.8258 1.9512 2.6247 34 1 5.3881 0.6012 3.4800 35 1 3.9911 0.6994 4.5686 36 1 5.7963 2.5421 4.6992 37 1 4.0902 3.0154 4.7092 38 1 5.0270 4.5322 3.2008 39 1 4.4319 3.2477 2.1066 40 1 6.8303 3.8487 1.6322 41 1 7.2488 3.3762 3.2979 42 1 7.6519 1.5405 1.6058 43 1 6.4932 1.0799 2.8811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005526385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:08 Heat of formation + Delta-G solvation = -101.256049 kcal Electronic energy + Delta-G solvation = -27724.471114 eV Core-core repulsion = 23860.942135 eV Total energy + Delta-G solvation = -3863.528979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.29511 -39.00134 -38.41852 -36.19980 -35.49686 -33.56514 -32.70420 -32.50616 -29.85979 -27.90532 -27.42047 -26.37120 -25.68677 -23.54085 -21.59133 -20.66630 -20.29263 -19.64777 -18.68153 -17.82883 -17.16244 -16.70692 -16.17259 -15.92710 -15.85162 -15.27716 -15.01316 -14.31213 -14.16818 -13.80987 -13.68590 -13.50197 -13.08551 -12.85263 -12.81614 -12.71891 -12.18733 -11.92351 -11.85861 -11.70924 -11.62305 -11.37095 -11.29120 -11.01788 -10.92364 -10.89059 -10.59048 -10.57823 -10.55081 -10.41228 -10.29644 -9.93008 -9.60288 -9.37683 -9.11240 -8.06195 -7.63066 -6.96935 -6.63735 -5.18595 1.71705 2.05252 2.41756 2.71983 2.93463 2.97861 3.01608 3.03540 3.34736 3.80150 4.15939 4.32095 4.86922 4.94412 5.05058 5.13185 5.19863 5.22937 5.26744 5.36685 5.40175 5.46629 5.56584 5.62727 5.69853 5.74185 5.87968 5.89286 6.06001 6.08157 6.09824 6.14940 6.22564 6.36053 6.38108 6.57727 6.59213 6.62716 6.71810 6.99792 7.10115 7.37168 7.60859 7.75661 8.06578 8.53098 8.80817 10.00604 10.23749 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.004095 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.320245 B = 6835.156089 C = 8424.355604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.547 3.453 4 O -0.507 6.507 5 C -0.276 4.276 6 C 0.148 3.852 7 N -0.645 5.645 8 C 0.525 3.475 9 O -0.545 6.545 10 C -0.523 4.523 11 H 0.075 0.925 12 C 0.087 3.913 13 N -0.735 5.735 14 Si 0.919 3.081 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.263 1.263 18 S 0.254 5.746 19 C -0.272 4.272 20 C -0.025 4.025 21 C -0.058 4.058 22 C -0.126 4.126 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.113 4.113 26 C -0.049 4.049 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.399 0.601 31 H 0.279 0.721 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 -1.602 13.898 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.389 3.611 4 O -0.394 6.394 5 C -0.293 4.293 6 C -0.077 4.077 7 N -0.284 5.284 8 C 0.336 3.664 9 O -0.430 6.430 10 C -0.558 4.558 11 H 0.093 0.907 12 C -0.138 4.138 13 N -0.361 5.361 14 Si 0.743 3.257 15 H -0.188 1.188 16 H -0.200 1.200 17 H -0.188 1.188 18 S 0.514 5.486 19 C -0.389 4.389 20 C -0.037 4.037 21 C -0.097 4.097 22 C -0.162 4.162 23 C -0.153 4.153 24 C -0.169 4.169 25 C -0.152 4.152 26 C -0.088 4.088 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.234 0.766 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.725 -1.180 12.896 13.064 hybrid contribution -2.674 -0.087 -0.278 2.690 sum -4.399 -1.267 12.618 13.423 Atomic orbital electron populations 1.23229 0.77432 1.03308 1.02281 1.86789 1.22458 1.33748 1.84128 1.20795 0.88582 0.80925 0.70770 1.90824 1.67142 1.36230 1.45231 1.17922 0.89209 1.29486 0.92648 1.22262 0.99547 0.97670 0.88227 1.43636 1.11311 1.71198 1.02232 1.17178 0.85854 0.79438 0.83885 1.90611 1.13962 1.55701 1.82726 1.19826 0.95199 1.51354 0.89385 0.90702 1.25793 0.94353 0.92324 1.01363 1.69961 1.03367 1.29923 1.32862 0.86213 0.79394 0.79954 0.80174 1.18810 1.20021 1.18801 1.85564 0.97874 1.72169 0.92967 1.24901 0.96919 1.15528 1.01540 1.18659 0.91292 1.01351 0.92372 1.20408 0.97265 1.01560 0.90485 1.21473 1.00388 0.97404 0.96971 1.21092 1.00745 0.95350 0.98075 1.21636 0.97973 0.98298 0.98985 1.21710 0.96742 0.96247 1.00452 1.20638 0.95198 0.96944 0.95974 0.92040 0.88417 0.92221 0.76635 0.91013 0.91236 0.91567 0.90222 0.92260 0.92381 0.93243 0.92378 0.89523 0.92120 0.92147 0.91700 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 101.05 1.07 1.45 16 2 O -0.35 -5.87 10.58 -40.94 -0.43 -6.30 16 3 C 0.55 10.31 5.96 34.13 0.20 10.51 16 4 O -0.51 -10.38 16.91 -19.35 -0.33 -10.71 16 5 C -0.28 -5.41 5.73 -105.56 -0.60 -6.01 16 6 C 0.15 3.24 7.13 -15.42 -0.11 3.13 16 7 N -0.65 -14.94 5.31 -13.46 -0.07 -15.01 16 8 C 0.52 14.05 7.50 -15.20 -0.11 13.94 16 9 O -0.54 -15.84 12.34 5.03 0.06 -15.78 16 10 C -0.52 -13.68 9.27 -37.80 -0.35 -14.03 16 11 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 12 C 0.09 2.21 5.50 -17.34 -0.10 2.11 16 13 N -0.73 -19.95 11.71 55.56 0.65 -19.30 16 14 Si 0.92 18.45 29.56 -169.99 -5.02 13.43 16 15 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 16 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 18 S 0.25 5.21 20.29 -107.50 -2.18 3.02 16 19 C -0.27 -4.55 5.19 -35.27 -0.18 -4.73 16 20 C -0.03 -0.43 4.21 -103.92 -0.44 -0.87 16 21 C -0.06 -0.81 4.19 -27.24 -0.11 -0.92 16 22 C -0.13 -1.41 5.33 -27.70 -0.15 -1.56 16 23 C -0.12 -1.24 5.08 -28.09 -0.14 -1.38 16 24 C -0.13 -1.67 5.78 -27.37 -0.16 -1.83 16 25 C -0.11 -1.40 5.54 -26.52 -0.15 -1.55 16 26 C -0.05 -0.65 5.60 -27.16 -0.15 -0.80 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.40 8.43 8.09 -40.82 -0.33 8.10 16 31 H 0.28 6.81 8.29 -40.82 -0.34 6.48 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.97 7.73 -51.93 -0.40 0.57 16 34 H 0.08 0.89 4.81 -51.93 -0.25 0.64 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.34 4.52 -51.93 -0.23 1.11 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.62 7.84 -51.93 -0.41 0.21 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.09 1.03 4.37 -51.93 -0.23 0.80 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -31.06 354.92 -9.05 -40.12 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.59 Total: 7.73 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.49 Total: -2.54 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.58 Total: -34.31 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.70 Total: -32.79 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.43 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -2.18 Total: 3.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.06 -9.05 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005526385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.137 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds