Wall clock time and date at job start Tue Mar 31 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41838 * 126.11047 * 2 1 4 4 C 1.41712 * 126.82323 * 359.97438 * 3 2 1 5 5 O 1.21853 * 119.99813 * 94.46685 * 4 3 2 6 6 C 1.47829 * 120.00136 * 274.47261 * 4 3 2 7 7 C 1.39640 * 120.11687 * 174.62499 * 6 4 3 8 8 C 1.37845 * 119.87815 * 179.97438 * 7 6 4 9 9 C 1.38647 * 120.12170 * 0.02562 * 8 7 6 10 10 F 1.35099 * 119.88530 * 179.97438 * 9 8 7 11 11 C 1.38658 * 120.23682 * 0.22893 * 9 8 7 12 12 C 1.37850 * 120.11223 * 359.49224 * 11 9 8 13 13 C 1.40887 * 106.35826 * 179.72976 * 3 2 1 14 14 C 1.40130 * 132.34161 * 180.22127 * 13 3 2 15 15 C 1.36473 * 119.32411 * 180.02562 * 14 13 3 16 16 C 1.40219 * 119.42996 * 359.97438 * 15 14 13 17 17 C 1.35095 * 120.35495 * 0.02660 * 16 15 14 18 18 N 1.36620 * 120.76107 * 359.95377 * 17 16 15 19 19 C 1.34434 * 126.10764 * 180.15314 * 2 1 3 20 20 C 1.50702 * 125.17183 * 0.02562 * 19 2 1 21 21 C 1.50706 * 109.46948 * 270.27833 * 20 19 2 22 22 H 1.07994 * 119.99878 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99784 * 179.97438 * 21 20 19 24 24 N 1.31518 * 120.00044 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99731 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46879 * 60.00322 * 25 23 21 27 27 H 1.48509 * 109.46703 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47488 * 299.99954 * 25 23 21 29 29 H 1.09004 * 109.47493 * 90.01972 * 1 2 3 30 30 H 1.08998 * 109.47486 * 210.02095 * 1 2 3 31 31 H 1.09005 * 109.47055 * 330.02054 * 1 2 3 32 32 H 1.07998 * 120.05982 * 359.95391 * 7 6 4 33 33 H 1.08000 * 119.94188 * 180.02562 * 8 7 6 34 34 H 1.07995 * 119.94364 * 179.74525 * 11 9 8 35 35 H 1.08001 * 120.05861 * 180.25420 * 12 11 9 36 36 H 1.07997 * 120.34135 * 359.97438 * 14 13 3 37 37 H 1.07994 * 120.28579 * 179.97438 * 15 14 13 38 38 H 1.08001 * 119.82019 * 180.02562 * 16 15 14 39 39 H 1.08007 * 119.62118 * 180.02562 * 17 16 15 40 40 H 1.09003 * 109.46845 * 30.27411 * 20 19 2 41 41 H 1.08994 * 109.47434 * 150.27565 * 20 19 2 42 42 H 0.96997 * 120.00208 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3429 1.1459 0.0000 4 6 1.9270 2.5006 -0.0005 5 8 1.8264 3.1074 1.0514 6 6 1.6151 3.1776 -1.2771 7 6 1.0984 4.4749 -1.2743 8 6 0.8098 5.1017 -2.4676 9 6 1.0312 4.4463 -3.6691 10 9 0.7461 5.0649 -4.8358 11 6 1.5391 3.1561 -3.6775 12 6 1.8366 2.5222 -2.4901 13 6 3.6689 0.6698 0.0064 14 6 4.9072 1.3256 0.0133 15 6 6.0547 0.5869 0.0180 16 6 5.9731 -0.8129 0.0164 17 6 4.7695 -1.4265 0.0097 18 7 3.6138 -0.6980 0.0053 19 6 2.2992 -1.0861 -0.0029 20 6 1.8155 -2.5134 -0.0073 21 6 1.6473 -2.9911 1.4121 22 1 1.8688 -2.3277 2.2350 23 6 1.2104 -4.2751 1.6601 24 7 0.9411 -5.0832 0.6580 25 14 1.0025 -4.8674 3.4195 26 1 0.0104 -4.0100 4.1164 27 1 0.5246 -6.2735 3.4151 28 1 2.3066 -4.7896 4.1254 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5141 31 1 -0.3633 0.8902 0.5135 32 1 0.9249 4.9860 -0.3389 33 1 0.4105 6.1052 -2.4666 34 1 1.7058 2.6485 -4.6160 35 1 2.2360 1.5188 -2.4978 36 1 4.9531 2.4046 0.0140 37 1 7.0174 1.0763 0.0229 38 1 6.8772 -1.4036 0.0205 39 1 4.7204 -2.5055 0.0089 40 1 0.8585 -2.5711 -0.5259 41 1 2.5443 -3.1424 -0.5184 42 1 0.6334 -5.9864 0.8325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006550082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:27 Heat of formation + Delta-G solvation = 8.303710 kcal Electronic energy + Delta-G solvation = -28023.423240 eV Core-core repulsion = 24041.573967 eV Total energy + Delta-G solvation = -3981.849273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.122 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.15266 -41.94249 -39.72565 -37.90125 -36.56880 -33.50727 -32.88642 -31.41335 -31.27593 -30.94253 -29.32123 -27.39417 -26.32801 -24.49602 -23.53363 -23.15017 -22.24808 -21.64820 -19.55647 -19.10057 -17.92300 -16.89864 -16.59465 -16.47373 -16.18793 -15.93111 -15.80944 -15.25880 -14.93836 -14.68489 -14.59637 -14.45872 -14.14456 -13.75807 -13.57441 -13.23124 -12.90034 -12.65676 -12.60268 -12.29643 -12.23831 -12.10202 -11.79309 -11.41260 -11.35213 -11.21043 -11.12317 -10.79933 -10.71580 -10.67198 -9.94915 -9.92024 -9.62914 -9.52926 -9.33633 -8.90457 -8.54907 -7.85205 -6.76526 -6.14113 -4.21611 0.47310 1.06406 1.11726 1.69904 2.32548 3.13914 3.25601 3.26068 3.30270 3.35879 3.55942 3.79987 3.98324 4.32375 4.36171 4.53932 4.66578 4.89283 5.03274 5.08256 5.11554 5.17917 5.24814 5.26355 5.39877 5.61509 5.70131 5.76631 5.83778 5.90936 5.98811 6.04377 6.08846 6.17853 6.22321 6.26971 6.31572 6.43276 6.55064 6.62118 6.64042 6.85920 7.09340 7.28816 7.33550 7.66166 7.70229 7.78851 7.82600 8.16308 8.83042 9.43968 10.92372 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.003400 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.706430 B = 8233.757953 C = 9130.455145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.085 4.085 3 C -0.272 4.272 4 C 0.494 3.506 5 O -0.453 6.453 6 C -0.166 4.166 7 C -0.038 4.038 8 C -0.170 4.170 9 C 0.122 3.878 10 F -0.138 7.138 11 C -0.168 4.168 12 C -0.028 4.028 13 C 0.072 3.928 14 C -0.103 4.103 15 C -0.117 4.117 16 C -0.172 4.172 17 C 0.085 3.915 18 N -0.334 5.334 19 C 0.039 3.961 20 C 0.082 3.918 21 C -0.518 4.518 22 H 0.057 0.943 23 C 0.063 3.937 24 N -0.892 5.892 25 Si 0.895 3.105 26 H -0.274 1.274 27 H -0.286 1.286 28 H -0.277 1.277 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.141 0.859 39 H 0.165 0.835 40 H 0.048 0.952 41 H 0.025 0.975 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 14.788 -8.088 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.280 4.280 4 C 0.372 3.628 5 O -0.328 6.328 6 C -0.167 4.167 7 C -0.056 4.056 8 C -0.189 4.189 9 C 0.102 3.898 10 F -0.117 7.117 11 C -0.187 4.187 12 C -0.046 4.046 13 C -0.034 4.034 14 C -0.122 4.122 15 C -0.137 4.137 16 C -0.192 4.192 17 C -0.037 4.037 18 N 0.003 4.997 19 C -0.069 4.069 20 C 0.044 3.956 21 C -0.556 4.556 22 H 0.075 0.925 23 C -0.139 4.139 24 N -0.531 5.531 25 Si 0.722 3.278 26 H -0.200 1.200 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.159 0.841 39 H 0.183 0.817 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.183 14.719 -7.617 17.364 hybrid contribution -0.032 -0.374 0.699 0.794 sum 5.151 14.344 -6.918 16.737 Atomic orbital electron populations 1.20237 0.89451 1.02912 1.01492 1.19016 0.95285 0.89290 1.05144 1.18496 0.91935 0.94128 1.23483 1.18235 0.71860 0.85870 0.86824 1.90652 1.40353 1.67448 1.34354 1.20754 1.04718 0.95645 0.95591 1.21244 0.93072 0.93147 0.98159 1.21080 1.05173 1.01684 0.90967 1.18000 0.98709 0.91773 0.81303 1.91508 1.91046 1.82602 1.46535 1.21159 1.03509 0.93936 1.00096 1.21364 0.93258 0.99717 0.90247 1.18272 0.93406 0.82642 1.09043 1.20350 0.89730 0.99832 1.02329 1.20889 0.98070 0.93635 1.01148 1.20589 0.96473 0.95115 1.07006 1.21830 0.83928 0.98617 0.99351 1.41436 1.06093 1.06080 1.46091 1.21257 0.78555 0.99143 1.07934 1.17939 0.97007 0.82468 0.98171 1.21013 1.45631 0.97575 0.91373 0.92498 1.24968 0.95080 0.96590 0.97286 1.69926 1.45073 1.07333 1.30722 0.86602 0.78746 0.77739 0.84703 1.19980 1.21155 1.20225 0.91976 0.89846 0.92736 0.83978 0.84332 0.84225 0.83802 0.85079 0.85360 0.84128 0.81736 0.93424 0.95666 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 9.73 36.00 0.35 -1.12 16 2 C -0.08 -1.65 6.14 -104.59 -0.64 -2.29 16 3 C -0.27 -4.91 4.29 -106.19 -0.46 -5.36 16 4 C 0.49 8.21 6.43 -34.33 -0.22 7.99 16 5 O -0.45 -8.51 17.11 5.05 0.09 -8.43 16 6 C -0.17 -2.24 5.87 -104.93 -0.62 -2.85 16 7 C -0.04 -0.44 9.59 -39.20 -0.38 -0.82 16 8 C -0.17 -1.72 10.01 -39.57 -0.40 -2.12 16 9 C 0.12 1.31 7.31 -39.27 -0.29 1.03 16 10 F -0.14 -1.52 17.26 2.25 0.04 -1.48 16 11 C -0.17 -1.80 10.01 -39.57 -0.40 -2.19 16 12 C -0.03 -0.34 9.43 -39.20 -0.37 -0.71 16 13 C 0.07 1.28 6.72 -83.90 -0.56 0.71 16 14 C -0.10 -1.51 10.04 -39.51 -0.40 -1.91 16 15 C -0.12 -1.48 10.09 -39.47 -0.40 -1.88 16 16 C -0.17 -2.25 9.98 -39.96 -0.40 -2.65 16 17 C 0.08 1.38 10.65 -16.54 -0.18 1.20 16 18 N -0.33 -6.29 2.92 -56.59 -0.17 -6.45 16 19 C 0.04 0.82 6.10 -81.59 -0.50 0.32 16 20 C 0.08 1.94 4.84 -29.03 -0.14 1.80 16 21 C -0.52 -13.67 9.09 -34.44 -0.31 -13.98 16 22 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 23 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 24 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 25 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.60 7.68 -51.93 -0.40 1.20 16 31 H 0.05 0.90 8.02 -51.93 -0.42 0.48 16 32 H 0.14 1.54 7.66 -52.49 -0.40 1.13 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.14 1.81 7.17 -52.49 -0.38 1.44 16 36 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.17 2.61 7.80 -52.48 -0.41 2.20 16 40 H 0.05 1.18 7.66 -51.93 -0.40 0.78 16 41 H 0.03 0.62 7.81 -51.93 -0.41 0.21 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -30.13 371.51 -10.00 -40.13 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.88 Total: 2.11 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -6.39 Total: -23.25 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.57 Total: -30.50 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.13 -10.00 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006550082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.430 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds