Wall clock time and date at job start Tue Mar 31 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41838 * 126.10797 * 2 1 4 4 C 1.41716 * 126.81988 * 0.02562 * 3 2 1 5 5 O 1.21850 * 119.99949 * 94.58103 * 4 3 2 6 6 C 1.47802 * 120.00324 * 274.57343 * 4 3 2 7 7 C 1.39644 * 120.16213 * 354.70781 * 6 4 3 8 8 C 1.37872 * 119.88099 * 180.25297 * 7 6 4 9 9 C 1.38456 * 120.20729 * 359.44611 * 8 7 6 10 10 C 1.38225 * 120.33817 * 0.55915 * 9 8 7 11 11 C 1.38299 * 120.11576 * 359.72173 * 10 9 8 12 12 F 1.35101 * 120.10692 * 180.02562 * 11 10 9 13 13 C 1.40892 * 106.35819 * 179.74241 * 3 2 1 14 14 C 1.40128 * 132.33951 * 180.23876 * 13 3 2 15 15 C 1.36468 * 119.31826 * 180.02562 * 14 13 3 16 16 C 1.40219 * 119.43367 * 0.02562 * 15 14 13 17 17 C 1.35086 * 120.35625 * 359.97438 * 16 15 14 18 18 N 1.36620 * 120.76053 * 0.02562 * 17 16 15 19 19 C 1.34431 * 126.10856 * 180.20634 * 2 1 3 20 20 C 1.50701 * 125.17075 * 359.95161 * 19 2 1 21 21 C 1.50704 * 109.47242 * 270.33839 * 20 19 2 22 22 H 1.08005 * 119.99676 * 0.02562 * 21 20 19 23 23 C 1.37870 * 120.00171 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00134 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00124 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47319 * 89.99485 * 25 23 21 27 27 H 1.48494 * 109.47313 * 209.99774 * 25 23 21 28 28 H 1.48504 * 109.46960 * 329.99503 * 25 23 21 29 29 H 1.08998 * 109.47460 * 90.02304 * 1 2 3 30 30 H 1.09000 * 109.46969 * 210.02618 * 1 2 3 31 31 H 1.09002 * 109.46860 * 330.01818 * 1 2 3 32 32 H 1.07999 * 120.06296 * 359.97438 * 7 6 4 33 33 H 1.07994 * 119.89102 * 179.72865 * 8 7 6 34 34 H 1.08001 * 119.82776 * 180.30487 * 9 8 7 35 35 H 1.07995 * 119.94515 * 179.74596 * 10 9 8 36 36 H 1.07995 * 120.34082 * 359.97438 * 14 13 3 37 37 H 1.08001 * 120.27935 * 179.97438 * 15 14 13 38 38 H 1.08001 * 119.81655 * 179.97438 * 16 15 14 39 39 H 1.08004 * 119.62266 * 180.02562 * 17 16 15 40 40 H 1.08993 * 109.47401 * 30.34467 * 20 19 2 41 41 H 1.09008 * 109.47141 * 150.34258 * 20 19 2 42 42 H 0.97000 * 120.00190 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3429 1.1459 0.0000 4 6 1.9268 2.5006 0.0005 5 8 1.8289 3.1075 1.0526 6 6 1.6118 3.1775 -1.2751 7 6 1.8280 2.5223 -2.4892 8 6 1.5371 3.1611 -3.6758 9 6 1.0205 4.4457 -3.6670 10 6 0.8031 5.1026 -2.4704 11 6 1.0956 4.4769 -1.2722 12 9 0.8825 5.1189 -0.1027 13 6 3.6689 0.6698 0.0061 14 6 4.9072 1.3258 0.0132 15 6 6.0547 0.5871 0.0175 16 6 5.9730 -0.8127 0.0142 17 6 4.7696 -1.4264 0.0074 18 7 3.6138 -0.6980 0.0030 19 6 2.2992 -1.0861 -0.0039 20 6 1.8156 -2.5133 -0.0080 21 6 1.6473 -2.9909 1.4114 22 1 1.8682 -2.3270 2.2342 23 6 1.2106 -4.2748 1.6597 24 7 1.0642 -4.6916 2.8984 25 14 0.8279 -5.4228 0.2366 26 1 2.0523 -6.1767 -0.1342 27 1 -0.2365 -6.3757 0.6417 28 1 0.3636 -4.6284 -0.9291 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5136 32 1 2.2267 1.5186 -2.4988 33 1 1.7083 2.6562 -4.6149 34 1 0.7902 4.9385 -4.6000 35 1 0.4039 6.1060 -2.4711 36 1 4.9530 2.4048 0.0143 37 1 7.0174 1.0766 0.0225 38 1 6.8772 -1.4033 0.0172 39 1 4.7206 -2.5053 0.0053 40 1 0.8587 -2.5712 -0.5267 41 1 2.5444 -3.1425 -0.5190 42 1 0.7573 -5.5951 3.0731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006550088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:30 Heat of formation + Delta-G solvation = 16.089124 kcal Electronic energy + Delta-G solvation = -28418.933686 eV Core-core repulsion = 24437.422014 eV Total energy + Delta-G solvation = -3981.511672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.122 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.90802 -41.99132 -39.56134 -38.06564 -36.61996 -33.48894 -32.89029 -31.60335 -31.40762 -30.62236 -29.73347 -27.58465 -26.48166 -24.65097 -23.37752 -23.03505 -22.17600 -21.54291 -19.55305 -19.13845 -17.73599 -16.96681 -16.84069 -16.41532 -16.30281 -15.98243 -15.62669 -15.28146 -15.05836 -14.74724 -14.58908 -14.33991 -14.09800 -14.01783 -13.48567 -13.18099 -13.01144 -12.64561 -12.43917 -12.34854 -12.25894 -12.10091 -11.84148 -11.68402 -11.48409 -11.46438 -11.18210 -10.87949 -10.66946 -10.39487 -10.09712 -9.94974 -9.62348 -9.47012 -9.28599 -8.90908 -8.69755 -7.89086 -6.77185 -6.17004 -4.18316 0.49870 1.01529 1.08329 1.65849 2.39234 3.06953 3.18189 3.21739 3.28269 3.28519 3.52182 3.76244 4.03425 4.29738 4.30089 4.52177 4.72787 4.85069 4.95886 5.00313 5.10875 5.12834 5.21151 5.21987 5.35317 5.52741 5.68630 5.72868 5.83791 5.89541 5.96969 6.03867 6.09427 6.10562 6.15595 6.18824 6.25093 6.37555 6.48985 6.58111 6.63813 6.69085 6.81469 6.94476 7.24007 7.48625 7.53439 7.71717 7.74980 8.38964 8.89222 9.41160 10.95626 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.003804 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.663613 B = 7359.720658 C = 8215.099247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.079 4.079 3 C -0.268 4.268 4 C 0.488 3.512 5 O -0.440 6.440 6 C -0.191 4.191 7 C -0.030 4.030 8 C -0.148 4.148 9 C -0.066 4.066 10 C -0.174 4.174 11 C 0.150 3.850 12 F -0.120 7.120 13 C 0.077 3.923 14 C -0.102 4.102 15 C -0.115 4.115 16 C -0.168 4.168 17 C 0.082 3.918 18 N -0.333 5.333 19 C 0.041 3.959 20 C 0.049 3.951 21 C -0.519 4.519 22 H 0.074 0.926 23 C 0.073 3.927 24 N -0.894 5.894 25 Si 0.874 3.126 26 H -0.276 1.276 27 H -0.284 1.284 28 H -0.263 1.263 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.164 0.836 40 H 0.046 0.954 41 H 0.019 0.981 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 14.339 -15.564 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.276 4.276 4 C 0.364 3.636 5 O -0.314 6.314 6 C -0.193 4.193 7 C -0.048 4.048 8 C -0.166 4.166 9 C -0.084 4.084 10 C -0.193 4.193 11 C 0.130 3.870 12 F -0.098 7.098 13 C -0.030 4.030 14 C -0.121 4.121 15 C -0.136 4.136 16 C -0.189 4.189 17 C -0.040 4.040 18 N 0.004 4.996 19 C -0.067 4.067 20 C 0.011 3.989 21 C -0.557 4.557 22 H 0.093 0.907 23 C -0.129 4.129 24 N -0.532 5.532 25 Si 0.700 3.300 26 H -0.202 1.202 27 H -0.210 1.210 28 H -0.188 1.188 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.182 0.818 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.950 14.301 -14.823 21.184 hybrid contribution -0.114 -0.665 -0.328 0.750 sum 4.836 13.636 -15.151 20.950 Atomic orbital electron populations 1.20264 0.89408 1.03233 1.01414 1.18995 0.95309 0.89274 1.04561 1.18440 0.91882 0.93958 1.23301 1.18138 0.72733 0.86051 0.86633 1.90715 1.39437 1.67209 1.34037 1.20849 1.06967 0.94328 0.97155 1.21405 0.93458 0.99668 0.90309 1.21220 1.01437 0.95445 0.98489 1.21196 0.95288 0.94438 0.97446 1.21125 1.05336 1.01758 0.91076 1.17938 0.97034 0.90173 0.81818 1.91580 1.91656 1.80706 1.45846 1.18270 0.93462 0.82495 1.08726 1.20366 0.89685 0.99914 1.02160 1.20902 0.98112 0.93613 1.00987 1.20597 0.96468 0.95140 1.06657 1.21799 0.83942 0.98517 0.99717 1.41367 1.05961 1.06157 1.46068 1.20672 0.78777 0.98097 1.09159 1.18375 0.96457 0.84994 0.99084 1.20923 1.45919 0.98559 0.90326 0.90746 1.24971 0.94737 0.97760 0.95454 1.69895 1.46234 1.18210 1.18822 0.86878 0.78654 0.81186 0.83258 1.20178 1.21009 1.18780 0.91961 0.89757 0.92506 0.83995 0.84869 0.84795 0.84386 0.84997 0.85243 0.84021 0.81818 0.93625 0.96258 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.74 36.01 0.35 -1.17 16 2 C -0.08 -1.55 6.14 -104.59 -0.64 -2.19 16 3 C -0.27 -4.98 4.30 -106.19 -0.46 -5.44 16 4 C 0.49 8.74 6.43 -34.34 -0.22 8.52 16 5 O -0.44 -9.18 16.11 5.05 0.08 -9.10 16 6 C -0.19 -2.77 5.88 -104.87 -0.62 -3.39 16 7 C -0.03 -0.36 9.43 -39.19 -0.37 -0.73 16 8 C -0.15 -1.33 10.03 -39.63 -0.40 -1.73 16 9 C -0.07 -0.53 10.04 -39.51 -0.40 -0.93 16 10 C -0.17 -1.73 10.01 -39.56 -0.40 -2.13 16 11 C 0.15 2.04 7.28 -38.97 -0.28 1.76 16 12 F -0.12 -1.89 15.57 2.25 0.04 -1.85 16 13 C 0.08 1.37 6.72 -83.89 -0.56 0.81 16 14 C -0.10 -1.52 10.04 -39.51 -0.40 -1.92 16 15 C -0.12 -1.47 10.09 -39.48 -0.40 -1.87 16 16 C -0.17 -2.20 9.98 -39.96 -0.40 -2.59 16 17 C 0.08 1.32 10.65 -16.54 -0.18 1.14 16 18 N -0.33 -6.26 2.92 -56.59 -0.17 -6.42 16 19 C 0.04 0.85 6.10 -81.59 -0.50 0.35 16 20 C 0.05 1.09 3.91 -29.03 -0.11 0.98 16 21 C -0.52 -14.07 9.65 -34.44 -0.33 -14.40 16 22 H 0.07 2.29 7.98 -52.48 -0.42 1.88 16 23 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 24 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 25 Si 0.87 20.13 27.47 -169.99 -4.67 15.46 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.61 7.68 -51.93 -0.40 1.21 16 31 H 0.06 0.98 8.02 -51.93 -0.42 0.56 16 32 H 0.14 1.72 7.17 -52.49 -0.38 1.34 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.16 2.49 7.79 -52.48 -0.41 2.08 16 40 H 0.05 1.00 6.72 -51.93 -0.35 0.65 16 41 H 0.02 0.41 7.23 -51.92 -0.38 0.04 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 366.06 15.07 5.52 5.52 Total: -1.00 -33.10 366.06 -9.70 -42.81 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.87 Total: 2.36 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -6.40 Total: -22.99 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.61 Total: -32.21 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.10 -9.70 -42.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006550088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.896 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds