Wall clock time and date at job start Tue Mar 31 2020 05:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35963 * 117.00386 * 2 1 4 4 C 1.38269 * 120.11554 * 359.97438 * 3 2 1 5 5 C 1.38770 * 120.67849 * 179.97438 * 4 3 2 6 6 C 1.36635 * 120.49530 * 0.02562 * 5 4 3 7 7 C 1.39793 * 119.80825 * 359.97438 * 6 5 4 8 8 C 1.46235 * 134.14479 * 179.66573 * 7 6 5 9 9 C 1.35865 * 106.08737 * 179.89789 * 8 7 6 10 10 C 1.46917 * 125.14642 * 180.11337 * 9 8 7 11 11 O 1.21662 * 120.00139 * 0.29887 * 10 9 8 12 12 N 1.34779 * 119.99925 * 180.30340 * 10 9 8 13 13 C 1.39073 * 120.00243 * 175.71501 * 12 10 9 14 14 C 1.39529 * 119.84173 * 215.03488 * 13 12 10 15 15 C 1.36349 * 120.16728 * 179.75701 * 14 13 12 16 16 C 1.40881 * 119.83095 * 0.51326 * 15 14 13 17 17 C 1.41132 * 120.16032 * 179.71603 * 16 15 14 18 18 H 1.07997 * 120.00420 * 214.80864 * 17 16 15 19 19 C 1.39907 * 119.99973 * 34.80969 * 17 16 15 20 20 N 1.30876 * 119.99748 * 355.55623 * 19 17 16 21 21 Si 1.86798 * 120.00226 * 175.55876 * 19 17 16 22 22 H 1.48496 * 109.46952 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47096 * 119.99880 * 21 19 17 24 24 H 1.48506 * 109.47141 * 239.99886 * 21 19 17 25 25 C 1.40882 * 119.68253 * 359.74395 * 16 15 14 26 26 C 1.36357 * 119.82887 * 359.97438 * 25 16 15 27 27 O 1.34932 * 109.70570 * 0.39915 * 9 8 7 28 28 C 1.34775 * 110.84749 * 359.73293 * 27 9 8 29 29 H 1.09005 * 109.46911 * 59.99489 * 1 2 3 30 30 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47237 * 300.00040 * 1 2 3 32 32 H 1.07991 * 119.66427 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.75516 * 180.02562 * 5 4 3 34 34 H 1.07997 * 120.09594 * 179.97438 * 6 5 4 35 35 H 1.07998 * 126.95485 * 0.24850 * 8 7 6 36 36 H 0.96996 * 120.00083 * 355.71271 * 12 10 9 37 37 H 1.08003 * 119.91327 * 0.02562 * 14 13 12 38 38 H 1.07998 * 120.08555 * 180.23552 * 15 14 13 39 39 H 0.97004 * 119.99816 * 179.97438 * 20 19 17 40 40 H 1.08005 * 120.08710 * 179.97438 * 25 16 15 41 41 H 1.08000 * 119.91257 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2957 2.3726 -0.0005 5 6 1.9136 3.6151 0.0000 6 6 3.2765 3.7117 0.0005 7 6 4.0554 2.5509 0.0011 8 6 5.4943 2.2899 -0.0044 9 6 5.6317 0.9382 0.0020 10 6 6.9124 0.2183 0.0020 11 8 7.9590 0.8387 0.0015 12 7 6.9279 -1.1294 0.0026 13 6 8.1368 -1.8110 -0.0874 14 6 8.2041 -3.0159 -0.7877 15 6 9.3870 -3.6872 -0.8843 16 6 10.5407 -3.1667 -0.2656 17 6 11.7673 -3.8588 -0.3561 18 1 12.4578 -3.8448 0.4742 19 6 12.0888 -4.5631 -1.5214 20 7 11.2168 -4.6530 -2.4932 21 14 13.7625 -5.3753 -1.6902 22 1 14.5590 -5.1276 -0.4616 23 1 13.5862 -6.8375 -1.8800 24 1 14.4730 -4.8059 -2.8634 25 6 10.4640 -1.9523 0.4444 26 6 9.2754 -1.2892 0.5276 27 8 4.4140 0.3571 0.0020 28 6 3.4386 1.2872 0.0015 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2175 2.3120 -0.0005 33 1 1.3127 4.5125 0.0000 34 1 3.7506 4.6821 0.0005 35 1 6.2872 3.0232 -0.0067 36 1 6.0959 -1.6239 0.0657 37 1 7.3179 -3.4157 -1.2581 38 1 9.4383 -4.6178 -1.4298 39 1 11.4399 -5.1410 -3.3014 40 1 11.3443 -1.5475 0.9215 41 1 9.2150 -0.3583 1.0718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006747258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:54 Heat of formation + Delta-G solvation = -11.929122 kcal Electronic energy + Delta-G solvation = -26887.773567 eV Core-core repulsion = 22892.674143 eV Total energy + Delta-G solvation = -3995.099424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.115 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.66896 -39.97242 -39.44018 -37.32196 -37.18046 -34.60377 -32.99880 -32.56352 -30.72179 -29.76745 -29.58505 -28.79030 -27.66166 -25.48507 -23.73011 -23.01347 -21.81271 -21.42325 -20.78325 -19.98465 -18.50188 -17.91452 -17.57613 -17.30517 -16.71841 -16.40892 -15.84824 -15.78616 -15.34594 -15.17323 -14.67376 -14.47345 -13.93253 -13.78840 -13.58395 -13.20351 -13.02234 -12.72854 -12.63752 -12.58888 -12.17465 -11.81284 -11.72992 -11.67221 -11.61496 -11.41705 -11.20324 -11.03399 -10.79029 -10.20759 -10.02913 -9.64014 -9.51687 -9.29972 -8.98245 -8.85243 -8.14713 -7.58830 -6.91994 -6.65458 -4.37735 0.40426 1.04755 1.69467 2.30407 2.63826 2.83704 3.06451 3.07464 3.10457 3.14853 3.35255 3.40714 3.55258 3.96023 4.38172 4.43979 4.48786 4.66861 4.67913 4.77578 4.83599 4.96198 5.07536 5.12309 5.16243 5.39631 5.61386 5.76520 5.82365 6.03203 6.13514 6.16884 6.25186 6.38497 6.53143 6.66423 6.86698 7.01680 7.06414 7.14031 7.25246 7.59882 7.67016 7.77207 8.02366 8.16422 8.26898 8.48698 8.62532 8.88972 8.94873 10.25355 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.025858 B = 0.002106 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.593771 B =13292.464591 C =14057.745491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.144 3.856 4 C -0.189 4.189 5 C -0.098 4.098 6 C -0.101 4.101 7 C -0.100 4.100 8 C -0.132 4.132 9 C 0.001 3.999 10 C 0.577 3.423 11 O -0.504 6.504 12 N -0.629 5.629 13 C -0.006 4.006 14 C -0.114 4.114 15 C -0.142 4.142 16 C 0.102 3.898 17 C -0.457 4.457 18 H 0.078 0.922 19 C 0.068 3.932 20 N -0.809 5.809 21 Si 0.917 3.083 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.206 4.206 26 C -0.082 4.082 27 O -0.174 6.174 28 C 0.040 3.960 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.173 0.827 36 H 0.403 0.597 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.278 0.722 40 H 0.098 0.902 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.007 11.336 3.213 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.098 3.902 4 C -0.208 4.208 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.101 4.101 8 C -0.153 4.153 9 C -0.050 4.050 10 C 0.363 3.637 11 O -0.382 6.382 12 N -0.270 5.270 13 C -0.098 4.098 14 C -0.134 4.134 15 C -0.162 4.162 16 C 0.100 3.900 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.147 4.147 20 N -0.436 5.436 21 Si 0.741 3.259 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.226 4.226 26 C -0.102 4.102 27 O -0.075 6.075 28 C -0.009 4.009 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.191 0.809 36 H 0.238 0.762 37 H 0.111 0.889 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.247 11.153 2.965 23.304 hybrid contribution -0.037 -0.315 -0.306 0.441 sum -20.283 10.837 2.659 23.150 Atomic orbital electron populations 1.23118 0.77892 1.04391 1.01428 1.86186 1.21701 1.25965 1.88638 1.17733 0.86592 0.85700 1.00166 1.20965 0.99930 0.91053 1.08853 1.20522 0.94216 0.97020 0.99894 1.20267 0.93065 0.96883 1.01678 1.19748 0.92868 0.92946 1.04545 1.22690 0.94378 0.94574 1.03644 1.22429 0.83775 0.92822 1.05984 1.16683 0.85049 0.82624 0.79384 1.90880 1.29632 1.67300 1.50349 1.42874 1.09654 1.05001 1.69498 1.17247 0.85192 0.97390 1.09978 1.20330 0.98172 0.95364 0.99529 1.21201 0.90378 1.01216 1.03395 1.17766 0.92880 0.89867 0.89533 1.19561 1.02392 1.26348 1.00481 0.90411 1.25916 0.99035 0.94353 0.95396 1.69773 1.34594 1.33583 1.05613 0.86123 0.81611 0.78894 0.79226 1.18535 1.19963 1.19947 1.20805 0.96266 0.96876 1.08616 1.20407 0.92291 0.99013 0.98476 1.84097 1.12864 1.34862 1.75701 1.18835 0.87529 0.87289 1.07228 0.92408 0.87893 0.92411 0.84231 0.84906 0.84923 0.80916 0.76225 0.88854 0.84885 0.91092 0.88369 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.48 10.50 -19.62 -0.21 -3.69 16 3 C 0.14 1.67 6.70 -39.12 -0.26 1.41 16 4 C -0.19 -1.61 9.03 -39.37 -0.36 -1.97 16 5 C -0.10 -0.78 9.97 -39.96 -0.40 -1.18 16 6 C -0.10 -0.96 10.06 -39.58 -0.40 -1.36 16 7 C -0.10 -1.27 6.38 -105.21 -0.67 -1.94 16 8 C -0.13 -1.84 10.81 -37.22 -0.40 -2.24 16 9 C 0.00 0.01 7.07 -36.92 -0.26 -0.25 16 10 C 0.58 10.88 7.62 -12.75 -0.10 10.78 16 11 O -0.50 -10.91 14.24 5.22 0.07 -10.84 16 12 N -0.63 -11.89 5.29 -10.86 -0.06 -11.95 16 13 C -0.01 -0.13 6.30 -83.61 -0.53 -0.66 16 14 C -0.11 -2.63 9.90 -39.78 -0.39 -3.02 16 15 C -0.14 -3.65 8.61 -39.26 -0.34 -3.98 16 16 C 0.10 2.73 5.55 -106.80 -0.59 2.13 16 17 C -0.46 -12.11 9.02 -37.86 -0.34 -12.45 16 18 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 19 C 0.07 1.72 5.42 -17.33 -0.09 1.63 16 20 N -0.81 -20.93 10.60 55.55 0.59 -20.35 16 21 Si 0.92 18.90 29.56 -169.99 -5.03 13.87 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.21 -5.18 9.74 -39.26 -0.38 -5.56 16 26 C -0.08 -1.96 8.61 -39.78 -0.34 -2.31 16 27 O -0.17 -2.69 10.29 2.65 0.03 -2.67 16 28 C 0.04 0.55 7.35 -38.24 -0.28 0.27 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.14 0.76 6.26 -52.49 -0.33 0.44 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.40 6.48 8.53 -40.82 -0.35 6.13 16 37 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 38 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 39 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 40 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 41 H 0.11 2.53 6.22 -52.49 -0.33 2.20 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -31.11 356.79 -8.57 -39.68 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -4.20 Total: 10.10 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -5.15 Total: -19.54 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.53 Total: -32.30 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.10 Total: -17.19 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.11 -8.57 -39.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006747258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.754 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds