Wall clock time and date at job start Tue Mar 31 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35994 * 117.00344 * 2 1 4 4 C 1.38511 * 120.07575 * 0.02982 * 3 2 1 5 5 C 1.38284 * 120.01635 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.18613 * 359.97106 * 5 4 3 7 7 C 1.38198 * 120.16394 * 359.74972 * 6 5 4 8 8 C 1.38758 * 119.97800 * 0.52523 * 7 6 5 9 9 N 1.39964 * 120.09478 * 179.74656 * 8 7 6 10 10 C 1.39010 * 119.99857 * 353.33251 * 9 8 7 11 11 N 1.29600 * 125.40475 * 355.67296 * 10 9 8 12 12 N 1.37762 * 115.62363 * 179.97438 * 11 10 9 13 13 C 1.29673 * 115.60185 * 359.97438 * 12 11 10 14 14 S 1.76199 * 125.41088 * 180.02562 * 13 12 11 15 15 C 1.81400 * 103.00115 * 359.97438 * 14 13 12 16 16 C 1.53001 * 109.47172 * 179.97438 * 15 14 13 17 17 C 1.50709 * 109.47075 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99889 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99795 * 180.02562 * 17 16 15 20 20 N 1.31522 * 120.00154 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00050 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46691 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47209 * 119.99776 * 21 19 17 24 24 H 1.48500 * 109.47368 * 240.00281 * 21 19 17 25 25 S 1.76038 * 125.40325 * 175.62264 * 10 9 8 26 26 H 1.08998 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46657 * 299.99449 * 1 2 3 28 28 H 1.08996 * 109.47283 * 59.99392 * 1 2 3 29 29 H 1.07996 * 119.99337 * 359.97271 * 4 3 2 30 30 H 1.08002 * 119.90711 * 179.97438 * 5 4 3 31 31 H 1.07997 * 119.91555 * 180.02562 * 6 5 4 32 32 H 1.08006 * 120.01247 * 180.28224 * 7 6 5 33 33 H 0.96998 * 120.00731 * 173.33750 * 9 8 7 34 34 H 1.09003 * 109.47363 * 300.00182 * 15 14 13 35 35 H 1.09004 * 109.47202 * 59.99960 * 15 14 13 36 36 H 1.08997 * 109.46972 * 299.99906 * 16 15 14 37 37 H 1.08998 * 109.46914 * 60.00311 * 16 15 14 38 38 H 0.96993 * 119.99649 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2937 2.3744 0.0006 5 6 1.9228 3.6058 0.0001 6 6 3.3035 3.6811 -0.0005 7 6 4.0620 2.5259 0.0047 8 6 3.4378 1.2867 -0.0005 9 7 4.2036 0.1151 -0.0006 10 6 5.5853 0.1879 -0.1353 11 7 6.2630 1.2723 -0.3461 12 7 7.6276 1.1120 -0.4465 13 6 8.0600 -0.1036 -0.3167 14 16 9.7484 -0.6009 -0.3989 15 6 10.6203 0.9622 -0.6942 16 6 12.1240 0.6969 -0.7914 17 6 12.8484 1.9956 -1.0361 18 1 12.2918 2.9178 -1.1149 19 6 14.2214 2.0062 -1.1605 20 7 14.8991 0.8831 -1.0650 21 14 15.1195 3.6160 -1.4631 22 1 14.1359 4.7266 -1.5290 23 1 16.0752 3.8657 -0.3543 24 1 15.8610 3.5354 -2.7471 25 16 6.6921 -1.1780 -0.0454 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.2151 2.3192 0.0007 30 1 1.3341 4.5113 0.0002 31 1 3.7903 4.6452 -0.0005 32 1 5.1403 2.5876 0.0089 33 1 3.7704 -0.7476 0.0932 34 1 10.2679 1.4043 -1.6261 35 1 10.4252 1.6484 0.1300 36 1 12.4759 0.2551 0.1408 37 1 12.3193 0.0107 -1.6154 38 1 15.8650 0.8906 -1.1529 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006784955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:06 Heat of formation + Delta-G solvation = 60.211713 kcal Electronic energy + Delta-G solvation = -22381.517209 eV Core-core repulsion = 18864.202525 eV Total energy + Delta-G solvation = -3517.314684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81024 -39.44159 -37.80772 -36.12265 -33.78518 -31.43323 -30.92802 -30.45496 -29.55897 -27.63178 -25.39139 -25.12230 -23.01666 -22.58820 -21.45776 -20.86918 -19.51787 -18.34383 -17.56592 -17.26108 -16.60438 -16.22540 -15.90134 -15.74526 -15.42053 -15.07652 -14.52799 -14.32684 -13.97975 -13.84833 -13.75245 -13.45652 -13.19622 -12.45302 -12.23898 -12.21516 -11.80217 -11.76052 -11.62032 -11.45335 -11.08062 -10.81051 -10.66216 -10.44520 -10.25735 -10.08497 -9.76702 -9.71061 -9.44526 -9.18535 -8.81380 -8.47157 -7.97317 -7.36920 -6.11073 -4.15365 0.31299 0.57041 1.01950 1.14589 1.29755 1.53458 2.28290 2.60646 2.70273 2.89251 3.28023 3.35811 3.40846 3.56335 4.30897 4.39967 4.48022 4.57587 4.72441 4.78076 4.94094 5.05021 5.08064 5.22004 5.25365 5.26266 5.68647 5.91499 5.92739 6.03546 6.11196 6.28590 6.46235 6.59824 6.64525 6.82948 7.06373 7.43983 7.49664 7.84622 7.95287 8.19964 8.89308 9.49199 10.99776 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.021139 B = 0.002153 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.260281 B =13002.208883 C =14280.580850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.326 6.326 3 C 0.084 3.916 4 C -0.182 4.182 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.130 4.130 8 C 0.144 3.856 9 N -0.612 5.612 10 C 0.293 3.707 11 N -0.340 5.340 12 N -0.268 5.268 13 C 0.038 3.962 14 S -0.009 6.009 15 C -0.078 4.078 16 C 0.035 3.965 17 C -0.518 4.518 18 H 0.062 0.938 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 S 0.074 5.926 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.184 0.816 33 H 0.429 0.571 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.907 -3.208 3.288 30.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.240 6.240 3 C 0.036 3.964 4 C -0.201 4.201 5 C -0.131 4.131 6 C -0.139 4.139 7 C -0.152 4.152 8 C 0.045 3.955 9 N -0.243 5.243 10 C -0.089 4.089 11 N -0.175 5.175 12 N -0.096 5.096 13 C -0.361 4.361 14 S 0.221 5.779 15 C -0.228 4.228 16 C -0.004 4.004 17 C -0.558 4.558 18 H 0.080 0.920 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.209 1.209 25 S 0.308 5.692 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.200 0.800 33 H 0.268 0.732 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.113 -4.043 3.313 29.579 hybrid contribution -0.623 1.730 -0.252 1.856 sum -29.737 -2.313 3.061 29.983 Atomic orbital electron populations 1.23026 0.77964 1.03937 1.01415 1.85951 1.21751 1.26633 1.89637 1.18446 0.89664 0.85155 1.03114 1.20971 0.99655 0.91702 1.07771 1.20953 0.94812 0.96877 1.00460 1.21036 0.93412 0.98395 1.01095 1.22229 1.04252 0.89336 0.99386 1.17171 0.86467 0.86681 1.05168 1.41113 0.99362 1.08756 1.75089 1.25901 0.90129 0.93757 0.99121 1.74913 0.97603 1.20599 1.24359 1.75587 1.01336 1.15261 1.17454 1.30730 1.05646 0.94787 1.04918 1.85905 0.86187 1.18857 1.86939 1.24174 1.00962 0.92385 1.05253 1.19006 0.84231 0.98481 0.98702 1.21075 0.91605 0.92989 1.50151 0.91997 1.25010 0.97555 0.96668 0.95024 1.69971 1.07451 1.25929 1.49603 0.86423 0.79681 0.83416 0.77860 1.19546 1.20868 1.20876 1.85516 0.95952 1.10747 1.76999 0.88214 0.92615 0.92593 0.85176 0.85756 0.85321 0.79980 0.73176 0.89536 0.89526 0.95209 0.95215 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.33 -2.80 9.76 -19.72 -0.19 -3.00 16 3 C 0.08 0.85 6.70 -39.07 -0.26 0.59 16 4 C -0.18 -1.56 9.04 -39.46 -0.36 -1.92 16 5 C -0.11 -0.98 10.04 -39.55 -0.40 -1.37 16 6 C -0.12 -1.26 10.04 -39.58 -0.40 -1.66 16 7 C -0.13 -1.65 9.12 -39.40 -0.36 -2.01 16 8 C 0.14 1.72 6.64 -83.54 -0.55 1.16 16 9 N -0.61 -7.02 5.57 -10.24 -0.06 -7.07 16 10 C 0.29 4.04 8.29 -87.36 -0.72 3.32 16 11 N -0.34 -5.61 8.29 30.86 0.26 -5.36 16 12 N -0.27 -4.88 11.62 31.12 0.36 -4.52 16 13 C 0.04 0.64 7.82 51.85 0.41 1.04 16 14 S -0.01 -0.16 22.16 -107.50 -2.38 -2.55 16 15 C -0.08 -1.61 5.48 37.16 0.20 -1.41 16 16 C 0.04 0.88 4.98 -27.88 -0.14 0.74 16 17 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 18 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 21 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 S 0.07 0.95 23.39 -107.50 -2.51 -1.56 16 26 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 30 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.18 2.70 4.60 -62.26 -0.29 2.42 16 33 H 0.43 3.89 8.21 -40.82 -0.33 3.56 16 34 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 35 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -31.04 354.77 -9.72 -40.75 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.25 Total: 0.23 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -2.00 Total: -13.30 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 1.30 Total: -42.14 kcal Atomic # 8 Polarization: -2.80 SS G_CDS: -0.19 Total: -3.00 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -4.90 Total: -4.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.04 -9.72 -40.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006784955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.963 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds