Wall clock time and date at job start Tue Mar 31 2020 05:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00335 * 2 1 4 4 H 1.48495 * 109.47551 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47149 * 300.00123 * 3 2 1 6 6 H 1.48501 * 109.46836 * 59.99849 * 3 2 1 7 7 C 1.37883 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99217 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99916 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46902 * 180.02562 * 9 7 2 11 11 C 1.33669 * 125.19119 * 265.31146 * 10 9 7 12 12 C 1.35956 * 107.89494 * 180.20303 * 11 10 9 13 13 C 1.47916 * 126.75120 * 179.88161 * 12 11 10 14 14 C 1.39560 * 120.12288 * 184.71323 * 13 12 11 15 15 C 1.37944 * 119.89469 * 179.97438 * 14 13 12 16 16 C 1.38462 * 120.14047 * 359.97438 * 15 14 13 17 17 Cl 1.73594 * 119.87496 * 180.02562 * 16 15 14 18 18 C 1.38556 * 120.24705 * 0.02562 * 16 15 14 19 19 Cl 1.73605 * 119.94849 * 180.02562 * 18 16 15 20 20 C 1.38074 * 120.10445 * 359.97438 * 18 16 15 21 21 N 1.37939 * 106.49929 * 359.62853 * 12 11 10 22 22 C 1.31043 * 125.19117 * 85.00072 * 10 9 7 23 23 C 1.51603 * 141.27663 * 359.80882 * 22 10 9 24 24 C 1.54527 * 104.25860 * 196.64072 * 23 22 10 25 25 C 1.46992 * 141.63356 * 180.02562 * 21 12 11 26 26 H 0.97003 * 119.99778 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46966 * 60.00428 * 9 7 2 28 28 H 1.08997 * 109.47085 * 299.99859 * 9 7 2 29 29 H 1.08000 * 126.05616 * 0.04134 * 11 10 9 30 30 H 1.08001 * 120.05678 * 359.95566 * 14 13 12 31 31 H 1.07994 * 119.92983 * 179.97438 * 15 14 13 32 32 H 1.08002 * 120.07266 * 180.27882 * 20 18 16 33 33 H 1.09000 * 110.47683 * 315.33660 * 23 22 10 34 34 H 1.09002 * 110.47286 * 77.81997 * 23 22 10 35 35 H 1.09000 * 110.97084 * 92.93303 * 24 23 22 36 36 H 1.08996 * 110.97195 * 216.69105 * 24 23 22 37 37 H 1.09001 * 110.23574 * 282.01819 * 25 21 12 38 38 H 1.08996 * 110.23610 * 43.98760 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6357 -4.2563 -1.0893 12 6 3.5008 -5.2245 -0.6860 13 6 4.2218 -6.1834 -1.5512 14 6 5.0053 -7.1882 -0.9820 15 6 5.6753 -8.0803 -1.7933 16 6 5.5713 -7.9810 -3.1704 17 17 6.4168 -9.1078 -4.1849 18 6 4.7950 -6.9857 -3.7418 19 17 4.6696 -6.8687 -5.4694 20 6 4.1201 -6.0873 -2.9394 21 7 3.5785 -5.1329 0.6881 22 6 2.7646 -4.1261 1.0663 23 6 2.8066 -3.9674 2.5734 24 6 4.0763 -4.7369 3.0020 25 6 4.2339 -5.7516 1.8492 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6247 -2.5570 0.8897 29 1 2.3470 -4.0463 -2.1086 30 1 5.0874 -7.2671 0.0920 31 1 6.2821 -8.8579 -1.3534 32 1 3.5115 -5.3145 -3.3852 33 1 2.8892 -2.9147 2.8438 34 1 1.9195 -4.4084 3.0281 35 1 4.9370 -4.0703 3.0553 36 1 3.9208 -5.2474 3.9524 37 1 3.7423 -6.6906 2.1036 38 1 5.2897 -5.9229 1.6392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006925872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:54 Heat of formation + Delta-G solvation = 154.971354 kcal Electronic energy + Delta-G solvation = -23645.655164 eV Core-core repulsion = 20044.299231 eV Total energy + Delta-G solvation = -3601.355933 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.057 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.50652 -40.99624 -39.34210 -38.05183 -37.89894 -36.24016 -34.37100 -33.07993 -32.45705 -30.77819 -30.45838 -28.63152 -25.71131 -24.94501 -24.57097 -24.04069 -22.66579 -21.96020 -19.49068 -19.12372 -18.47458 -18.00091 -17.64132 -17.32742 -16.91829 -16.38377 -16.22088 -15.87901 -15.65515 -15.57349 -15.40755 -15.27402 -15.00546 -14.39617 -14.02574 -13.87863 -13.64178 -13.41001 -13.29666 -13.27452 -13.19414 -13.08298 -12.52355 -12.43581 -12.20886 -12.10926 -12.05013 -11.70353 -11.14603 -10.96582 -10.52018 -10.09978 -9.79343 -7.76917 -5.97811 -1.22774 -0.56172 -0.27393 0.14820 0.37786 0.43617 0.75660 0.98039 1.85685 2.03817 2.11324 2.20206 2.21723 2.26385 2.58614 2.80364 2.91358 2.98523 3.03268 3.13484 3.18574 3.29630 3.45222 3.54372 3.56188 3.57403 3.62346 3.75254 4.02791 4.07575 4.12193 4.16622 4.19055 4.34083 4.36798 4.49679 4.75570 4.83923 4.92877 5.17287 5.38116 5.91366 6.22700 7.06768 7.80979 9.30354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.082 3.918 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.583 4.583 8 H 0.073 0.927 9 C 0.213 3.787 10 N -0.323 5.323 11 C 0.037 3.963 12 C 0.088 3.912 13 C -0.014 4.014 14 C -0.093 4.093 15 C -0.088 4.088 16 C -0.021 4.021 17 Cl -0.031 7.031 18 C -0.024 4.024 19 Cl -0.027 7.027 20 C -0.073 4.073 21 N -0.439 5.439 22 C 0.283 3.717 23 C -0.060 4.060 24 C -0.127 4.127 25 C 0.090 3.910 26 H 0.283 0.717 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.218 0.782 30 H 0.137 0.863 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.096 -14.752 5.957 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.127 4.127 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.620 4.620 8 H 0.091 0.909 9 C 0.099 3.901 10 N 0.011 4.989 11 C -0.099 4.099 12 C -0.023 4.023 13 C -0.016 4.016 14 C -0.112 4.112 15 C -0.107 4.107 16 C -0.049 4.049 17 Cl -0.002 7.002 18 C -0.052 4.052 19 Cl 0.002 6.998 20 C -0.092 4.092 21 N -0.118 5.118 22 C 0.026 3.974 23 C -0.099 4.099 24 C -0.165 4.165 25 C -0.028 4.028 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.234 0.766 30 H 0.154 0.846 31 H 0.171 0.829 32 H 0.172 0.828 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.992 -14.770 5.699 17.307 hybrid contribution 0.351 0.835 -0.542 1.055 sum 7.343 -13.935 5.157 16.574 Atomic orbital electron populations 1.69834 1.06283 1.29701 1.44426 1.24927 0.95124 1.00106 0.92570 0.86147 0.79589 0.81197 0.79160 1.19338 1.19724 1.19766 1.20980 0.93632 0.88164 1.59187 0.90914 1.20904 0.86072 0.80132 1.03041 1.43634 1.28533 1.23659 1.03060 1.22381 0.98607 0.93412 0.95504 1.18878 1.02839 1.00734 0.79841 1.17516 0.98301 0.94599 0.91155 1.21186 0.95916 0.93711 1.00411 1.21012 0.99497 0.99804 0.90392 1.21050 0.97720 0.93713 0.92404 1.98450 1.75242 1.58854 1.67620 1.20656 0.99999 0.97012 0.87501 1.98458 1.96793 1.97469 1.07035 1.20959 0.98705 0.98549 0.91020 1.46146 1.33325 1.25941 1.06349 1.23664 0.90557 0.88343 0.94808 1.21366 1.00938 1.06619 0.80972 1.22907 0.98315 0.97156 0.98163 1.23067 1.00231 0.98450 0.81091 0.90729 0.90347 0.90827 0.76555 0.84568 0.82947 0.82788 0.85045 0.85775 0.87829 0.85993 0.86693 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -10.54 13.29 55.43 0.74 -9.81 16 2 C 0.08 0.85 5.46 -17.82 -0.10 0.76 16 3 Si 0.91 8.30 29.54 -169.99 -5.02 3.27 16 4 H -0.27 -2.38 7.11 56.52 0.40 -1.98 16 5 H -0.27 -2.76 7.11 56.52 0.40 -2.35 16 6 H -0.27 -2.66 7.11 56.52 0.40 -2.25 16 7 C -0.58 -4.32 9.38 -34.44 -0.32 -4.64 16 8 H 0.07 0.54 7.81 -52.49 -0.41 0.13 16 9 C 0.21 0.63 5.74 -5.19 -0.03 0.60 16 10 N -0.32 0.71 2.52 -115.23 -0.29 0.42 16 11 C 0.04 -0.15 10.70 -17.57 -0.19 -0.34 16 12 C 0.09 -0.48 6.96 -81.97 -0.57 -1.05 16 13 C -0.01 0.07 5.87 -104.97 -0.62 -0.54 16 14 C -0.09 0.59 9.70 -39.20 -0.38 0.21 16 15 C -0.09 0.45 9.81 -39.61 -0.39 0.06 16 16 C -0.02 0.06 6.33 -39.38 -0.25 -0.19 16 17 Cl -0.03 0.05 27.94 -51.86 -1.45 -1.40 16 18 C -0.02 0.06 6.32 -39.52 -0.25 -0.18 16 19 Cl -0.03 0.03 27.94 -51.86 -1.45 -1.41 16 20 C -0.07 0.32 9.36 -39.17 -0.37 -0.04 16 21 N -0.44 3.05 3.57 -108.13 -0.39 2.66 16 22 C 0.28 -1.43 7.97 -154.68 -1.23 -2.66 16 23 C -0.06 0.49 6.86 -26.64 -0.18 0.31 16 24 C -0.13 1.38 7.17 -25.20 -0.18 1.19 16 25 C 0.09 -0.95 6.36 -3.05 -0.02 -0.96 16 26 H 0.28 3.38 8.31 -40.82 -0.34 3.04 16 27 H 0.08 0.31 8.11 -51.93 -0.42 -0.11 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.22 -1.36 7.33 -52.49 -0.38 -1.74 16 30 H 0.14 -1.23 5.76 -52.49 -0.30 -1.53 16 31 H 0.15 -1.04 8.06 -52.49 -0.42 -1.47 16 32 H 0.15 -0.95 7.07 -52.49 -0.37 -1.32 16 33 H 0.13 -0.92 8.14 -51.93 -0.42 -1.34 16 34 H 0.12 -1.20 8.14 -51.93 -0.42 -1.62 16 35 H 0.10 -1.08 8.14 -51.93 -0.42 -1.50 16 36 H 0.12 -1.54 8.14 -51.93 -0.42 -1.96 16 37 H 0.12 -1.40 8.14 -51.93 -0.42 -1.83 16 38 H 0.11 -1.33 7.43 -51.93 -0.39 -1.71 16 LS Contribution 348.82 15.07 5.26 5.26 Total: 0.00 -16.17 348.82 -12.05 -28.22 By element: Atomic # 1 Polarization: -15.34 SS G_CDS: -4.37 Total: -19.71 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -5.08 Total: -7.49 kcal Atomic # 7 Polarization: -6.79 SS G_CDS: 0.06 Total: -6.73 kcal Atomic # 14 Polarization: 8.30 SS G_CDS: -5.02 Total: 3.27 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -2.90 Total: -2.81 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -16.17 -12.05 -28.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006925872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.189 kcal (2) G-P(sol) polarization free energy of solvation -16.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds