Wall clock time and date at job start Tue Mar 31 2020 05:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38284 * 119.92886 * 2 1 4 4 C 1.38116 * 120.06462 * 179.69835 * 3 2 1 5 5 C 1.38856 * 119.93495 * 0.28067 * 4 3 2 6 6 N 1.40104 * 120.07007 * 179.97438 * 5 4 3 7 7 C 1.36578 * 126.60035 * 65.02325 * 6 5 4 8 8 S 1.76199 * 125.68971 * 359.93947 * 7 6 5 9 9 C 1.76198 * 100.00001 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99898 * 359.97438 * 9 8 7 11 11 C 1.38606 * 119.99803 * 180.02562 * 9 8 7 12 12 N 1.31661 * 120.00178 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99998 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47473 * 59.99469 * 13 11 9 15 15 H 1.48496 * 109.47465 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46962 * 299.99945 * 13 11 9 17 17 N 1.31575 * 108.62131 * 179.97438 * 7 6 5 18 18 C 1.33545 * 109.66335 * 359.97438 * 17 7 6 19 19 C 1.36277 * 108.29420 * 359.77297 * 18 17 7 20 20 C 1.47697 * 126.69229 * 180.22684 * 19 18 17 21 21 C 1.39654 * 120.15202 * 184.88146 * 20 19 18 22 22 C 1.37939 * 119.84619 * 179.74483 * 21 20 19 23 23 C 1.38374 * 120.15044 * 0.53875 * 22 21 20 24 24 C 1.38383 * 120.30949 * 359.73938 * 23 22 21 25 25 C 1.37938 * 120.15183 * 359.97438 * 24 23 22 26 26 C 1.38856 * 119.86012 * 359.97438 * 5 4 3 27 27 C 1.38112 * 119.93309 * 359.97438 * 26 5 4 28 28 H 1.09001 * 109.46755 * 90.00042 * 1 2 3 29 29 H 1.08999 * 109.46951 * 210.00149 * 1 2 3 30 30 H 1.09001 * 109.47147 * 329.99909 * 1 2 3 31 31 H 1.08002 * 119.97093 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.03368 * 180.25494 * 4 3 2 33 33 H 0.97007 * 120.00518 * 180.02562 * 12 11 9 34 34 H 1.07999 * 125.85154 * 180.02562 * 18 17 7 35 35 H 1.08006 * 120.07776 * 0.02990 * 21 20 19 36 36 H 1.08006 * 119.92540 * 180.29881 * 22 21 20 37 37 H 1.07997 * 119.84903 * 179.76361 * 23 22 21 38 38 H 1.07992 * 119.92634 * 180.02562 * 24 23 22 39 39 H 1.07991 * 120.07790 * 180.02562 * 25 24 23 40 40 H 1.07998 * 120.03301 * 179.97438 * 26 5 4 41 41 H 1.08000 * 119.96848 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2017 0.0063 5 6 4.2739 0.0000 0.0067 6 7 5.6749 0.0001 0.0126 7 6 6.4851 0.4610 1.0108 8 16 5.9427 1.1680 2.5309 9 6 7.4995 1.5125 3.2808 10 1 8.4147 1.2688 2.7616 11 6 7.5496 2.0951 4.5374 12 7 6.4340 2.3917 5.1705 13 14 9.2000 2.4610 5.3322 14 1 9.9672 3.3971 4.4718 15 1 8.9817 3.0798 6.6643 16 1 9.9634 1.1973 5.4920 17 7 7.7381 0.2898 0.6478 18 6 7.7824 -0.2722 -0.5628 19 6 6.5034 -0.4726 -0.9885 20 6 6.0840 -1.0741 -2.2706 21 6 4.7311 -1.1223 -2.6135 22 6 4.3469 -1.6806 -3.8149 23 6 5.2975 -2.2023 -4.6745 24 6 6.6394 -2.1631 -4.3385 25 6 7.0382 -1.6024 -3.1430 26 6 3.5782 -1.2016 0.0014 27 6 2.1971 -1.1984 -0.0038 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6553 2.1328 -0.0004 32 1 4.1164 2.1380 0.0105 33 1 6.4690 2.7999 6.0499 34 1 8.6783 -0.5281 -1.1090 35 1 3.9877 -0.7192 -1.9416 36 1 3.3013 -1.7142 -4.0835 37 1 4.9909 -2.6418 -5.6121 38 1 7.3761 -2.5716 -5.0142 39 1 8.0857 -1.5720 -2.8822 40 1 4.1165 -2.1379 0.0013 41 1 1.6554 -2.1327 -0.0076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006977474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:44 Heat of formation + Delta-G solvation = 108.181005 kcal Electronic energy + Delta-G solvation = -25345.853009 eV Core-core repulsion = 21896.433484 eV Total energy + Delta-G solvation = -3449.419525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.099 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58131 -39.16803 -38.66554 -34.36137 -32.62133 -32.04542 -31.17806 -30.92047 -30.61650 -27.76916 -26.38042 -25.62098 -23.14032 -22.97183 -22.37834 -21.89938 -20.42069 -19.88777 -18.50990 -17.37535 -16.32821 -15.79798 -15.56271 -15.31302 -15.07038 -14.90006 -14.41309 -14.10533 -14.00868 -13.86867 -13.49180 -13.39419 -13.26822 -13.15736 -12.89642 -12.68909 -12.33314 -12.11204 -11.60189 -11.25047 -11.17723 -11.14832 -11.08752 -10.98614 -10.87875 -10.17538 -9.81684 -9.51747 -9.28788 -9.14518 -8.99864 -8.87081 -8.81528 -8.30703 -7.94930 -6.49911 -6.42547 -4.14150 0.97177 1.23209 1.34334 1.49514 2.59165 2.64352 3.23494 3.24134 3.29917 3.41507 3.62691 3.67916 4.05299 4.09087 4.77114 4.78809 4.81768 4.94601 4.97424 4.99682 5.00877 5.10034 5.19779 5.23508 5.34448 5.46843 5.50225 5.55574 5.58616 5.64488 5.69019 5.85659 5.93627 5.99092 6.01929 6.14670 6.26164 6.32767 6.48853 6.52210 6.56660 6.57698 6.81675 6.93937 7.04442 7.22721 7.61531 7.68028 8.41397 8.63939 9.09372 10.65766 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.004185 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.150771 B = 6688.602198 C = 8943.154450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.107 4.107 4 C -0.096 4.096 5 C 0.127 3.873 6 N -0.418 5.418 7 C 0.224 3.776 8 S 0.130 5.870 9 C -0.530 4.530 10 H 0.105 0.895 11 C 0.074 3.926 12 N -0.879 5.879 13 Si 0.932 3.068 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.270 1.270 17 N -0.493 5.493 18 C 0.026 3.974 19 C -0.034 4.034 20 C 0.019 3.981 21 C -0.143 4.143 22 C -0.111 4.111 23 C -0.139 4.139 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.100 4.100 27 C -0.114 4.114 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.273 0.727 34 H 0.166 0.834 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.901 -6.978 -15.333 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.115 4.115 5 C 0.036 3.964 6 N -0.103 5.103 7 C -0.141 4.141 8 S 0.367 5.633 9 C -0.678 4.678 10 H 0.123 0.877 11 C -0.135 4.135 12 N -0.515 5.515 13 Si 0.757 3.243 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.195 1.195 17 N -0.214 5.214 18 C -0.128 4.128 19 C -0.148 4.148 20 C 0.017 3.983 21 C -0.161 4.161 22 C -0.129 4.129 23 C -0.158 4.158 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.120 4.120 27 C -0.133 4.133 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.083 0.917 34 H 0.183 0.817 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.488 -6.415 -14.130 18.730 hybrid contribution 1.648 -0.255 -0.454 1.728 sum -8.840 -6.671 -14.584 18.312 Atomic orbital electron populations 1.20792 0.90899 1.03046 1.02251 1.19990 0.96294 0.92994 0.98995 1.20912 0.93072 0.97993 1.00607 1.21254 0.94505 0.97449 0.98316 1.17533 0.80987 0.94124 1.03738 1.42755 1.03253 1.49400 1.14911 1.27166 0.87240 1.01848 0.97818 1.83582 1.12395 1.67407 0.99943 1.23180 0.93104 1.46673 1.04882 0.87715 1.25058 0.98556 0.94150 0.95719 1.69964 1.26800 1.40057 1.14646 0.85994 0.81450 0.79043 0.77793 1.19524 1.20848 1.19528 1.70737 1.17262 1.20749 1.12636 1.22369 0.94672 1.01824 0.93895 1.19455 0.90447 1.12835 0.92019 1.17944 0.93190 0.96309 0.90852 1.21828 0.95765 1.00854 0.97643 1.20991 0.99224 0.98538 0.94134 1.21108 0.93292 1.01606 0.99765 1.20981 0.95971 0.99614 0.96508 1.21061 0.99108 0.99307 0.94094 1.21145 0.94514 0.97083 0.99271 1.20853 0.92961 0.97941 1.01520 0.91158 0.91422 0.91285 0.85147 0.84917 0.91693 0.81689 0.84988 0.86437 0.86529 0.86115 0.85730 0.85499 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.08 -0.94 5.88 -104.59 -0.62 -1.56 16 3 C -0.11 -1.37 9.69 -39.61 -0.38 -1.75 16 4 C -0.10 -1.52 9.75 -39.40 -0.38 -1.91 16 5 C 0.13 2.19 3.67 -83.62 -0.31 1.88 16 6 N -0.42 -8.39 2.85 -56.90 -0.16 -8.55 16 7 C 0.22 5.30 7.88 -88.06 -0.69 4.60 16 8 S 0.13 3.36 21.33 -107.50 -2.29 1.06 16 9 C -0.53 -15.03 9.36 30.87 0.29 -14.74 16 10 H 0.10 3.04 6.88 -52.49 -0.36 2.68 16 11 C 0.07 2.04 5.49 -17.49 -0.10 1.94 16 12 N -0.88 -24.92 13.22 55.48 0.73 -24.19 16 13 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 N -0.49 -11.83 9.96 -13.02 -0.13 -11.96 16 18 C 0.03 0.51 11.26 -17.51 -0.20 0.31 16 19 C -0.03 -0.64 6.81 -81.80 -0.56 -1.20 16 20 C 0.02 0.30 5.87 -104.97 -0.62 -0.32 16 21 C -0.14 -2.05 8.67 -39.16 -0.34 -2.39 16 22 C -0.11 -1.33 10.03 -39.64 -0.40 -1.73 16 23 C -0.14 -1.53 10.04 -39.48 -0.40 -1.92 16 24 C -0.11 -1.27 10.03 -39.64 -0.40 -1.67 16 25 C -0.12 -1.55 9.58 -39.16 -0.38 -1.93 16 26 C -0.10 -1.49 7.14 -39.40 -0.28 -1.77 16 27 C -0.11 -1.37 9.69 -39.61 -0.38 -1.75 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.17 2.67 7.32 -52.49 -0.38 2.28 16 35 H 0.13 1.94 3.70 -52.48 -0.19 1.75 16 36 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.48 7.07 -52.49 -0.37 1.11 16 40 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -31.95 363.08 -11.84 -43.79 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.67 Total: 4.38 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -5.77 Total: -26.45 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.44 Total: -44.70 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.29 Total: 1.06 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.95 -11.84 -43.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006977474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.971 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds