Wall clock time and date at job start Tue Mar 31 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38377 * 119.84526 * 2 1 4 4 C 1.37936 * 120.15421 * 179.97438 * 3 2 1 5 5 C 1.39653 * 119.84378 * 0.02992 * 4 3 2 6 6 C 1.47700 * 120.15439 * 179.97438 * 5 4 3 7 7 C 1.36282 * 126.68581 * 4.97787 * 6 5 4 8 8 N 1.33547 * 108.29067 * 179.76074 * 7 6 5 9 9 C 1.31584 * 109.66206 * 0.43241 * 8 7 6 10 10 S 1.76201 * 125.68672 * 179.83084 * 9 8 7 11 11 C 1.76199 * 99.99986 * 359.68737 * 10 9 8 12 12 H 1.08002 * 120.00405 * 0.02562 * 11 10 9 13 13 C 1.38606 * 119.99811 * 179.72306 * 11 10 9 14 14 N 1.31670 * 120.00275 * 180.27673 * 13 11 10 15 15 Si 1.86800 * 120.00110 * 0.28076 * 13 11 10 16 16 H 1.48498 * 109.47118 * 89.99505 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00025 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99646 * 15 13 11 19 19 N 1.36571 * 108.62069 * 359.56334 * 9 8 7 20 20 C 1.40112 * 126.59543 * 180.30080 * 19 9 8 21 21 C 1.38853 * 120.06520 * 244.69552 * 20 19 9 22 22 C 1.38116 * 119.93100 * 179.76924 * 21 20 19 23 23 C 1.38288 * 120.06634 * 0.51126 * 22 21 20 24 24 C 1.38285 * 120.13665 * 359.74845 * 23 22 21 25 25 C 1.38123 * 120.06517 * 359.97438 * 24 23 22 26 26 C 1.39666 * 119.69869 * 0.24776 * 5 4 3 27 27 C 1.37934 * 119.84239 * 359.45191 * 26 5 4 28 28 H 1.08995 * 109.47274 * 89.99795 * 1 2 3 29 29 H 1.09007 * 109.46895 * 209.99823 * 1 2 3 30 30 H 1.08994 * 109.47133 * 329.99096 * 1 2 3 31 31 H 1.07998 * 119.92213 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.07474 * 180.02562 * 4 3 2 33 33 H 1.08001 * 125.85307 * 359.97438 * 7 6 5 34 34 H 0.96991 * 120.00553 * 180.02562 * 14 13 11 35 35 H 1.07999 * 120.03832 * 0.02982 * 21 20 19 36 36 H 1.08000 * 119.97168 * 180.23282 * 22 21 20 37 37 H 1.08000 * 119.93542 * 179.71941 * 23 22 21 38 38 H 1.07995 * 119.96997 * 179.97438 * 24 23 22 39 39 H 1.08001 * 120.03111 * 180.02562 * 25 24 23 40 40 H 1.07994 * 120.07876 * 179.74792 * 26 5 4 41 41 H 1.08000 * 119.92554 * 180.32140 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2002 0.0000 4 6 3.5750 1.2077 0.0005 5 6 4.2765 0.0001 0.0004 6 6 5.7535 0.0001 0.0004 7 6 6.5677 1.0888 0.0953 8 7 7.8349 0.6685 0.0640 9 6 7.8640 -0.6415 -0.0562 10 16 9.3175 -1.6337 -0.1432 11 6 10.5507 -0.3800 -0.0342 12 1 10.2607 0.6564 0.0568 13 6 11.8931 -0.7244 -0.0588 14 7 12.8147 0.2120 0.0282 15 14 12.3948 -2.5169 -0.2155 16 1 12.5338 -2.8683 -1.6516 17 1 13.6926 -2.7298 0.4741 18 1 11.3568 -3.3776 0.4065 19 7 6.5797 -1.1044 -0.0962 20 6 6.1769 -2.4414 -0.2121 21 6 5.4849 -2.8642 -1.3392 22 6 5.0933 -4.1838 -1.4527 23 6 5.3806 -5.0812 -0.4406 24 6 6.0649 -4.6620 0.6855 25 6 6.4642 -3.3449 0.8023 26 6 3.5750 -1.2076 -0.0054 27 6 2.1957 -1.2003 0.0003 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8898 0.5139 31 1 1.6519 2.1333 0.0004 32 1 4.1112 2.1452 0.0010 33 1 6.2436 2.1152 0.1844 34 1 13.7541 -0.0289 0.0105 35 1 5.2567 -2.1628 -2.1282 36 1 4.5583 -4.5142 -2.3308 37 1 5.0694 -6.1116 -0.5296 38 1 6.2875 -5.3651 1.4745 39 1 6.9990 -3.0181 1.6818 40 1 4.1113 -2.1450 -0.0097 41 1 1.6520 -2.1334 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007128261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:41 Heat of formation + Delta-G solvation = 112.157582 kcal Electronic energy + Delta-G solvation = -25327.729535 eV Core-core repulsion = 21878.482448 eV Total energy + Delta-G solvation = -3449.247088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.099 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.69982 -39.08600 -38.95827 -33.91972 -33.25665 -32.56971 -31.26344 -30.75690 -29.53073 -28.95075 -26.27545 -25.63260 -23.32759 -23.13509 -22.45937 -21.79885 -20.62770 -19.96330 -18.62099 -17.32262 -16.42361 -15.74734 -15.63327 -15.46022 -15.28509 -15.06701 -14.66815 -14.14048 -14.09287 -13.80448 -13.63207 -13.53812 -13.35364 -13.13818 -12.92879 -12.61999 -12.36080 -12.16476 -11.73290 -11.66948 -11.35573 -11.34243 -11.21197 -11.04520 -10.94580 -10.11450 -9.81280 -9.62865 -9.32348 -9.12256 -9.08644 -8.97700 -8.90666 -8.55878 -8.07090 -6.73283 -6.38218 -4.15627 0.88074 1.14868 1.23044 1.44734 2.29337 2.52640 3.09111 3.15633 3.22696 3.37168 3.55447 3.59996 4.00041 4.12144 4.47033 4.71332 4.78495 4.80824 4.81137 4.86167 4.97165 4.99901 5.04240 5.17603 5.25906 5.37594 5.42472 5.43713 5.49561 5.59703 5.66284 5.68436 5.83429 5.87942 6.00953 6.09742 6.21509 6.23409 6.34865 6.38949 6.47817 6.57681 6.69425 6.85158 6.99471 7.13618 7.54896 7.87912 8.51625 8.71000 9.01261 10.70908 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.003805 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.568502 B = 7357.081214 C = 8955.695038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.104 4.104 3 C -0.112 4.112 4 C -0.109 4.109 5 C 0.010 3.990 6 C -0.025 4.025 7 C 0.024 3.976 8 N -0.477 5.477 9 C 0.242 3.758 10 S 0.045 5.955 11 C -0.519 4.519 12 H 0.122 0.878 13 C 0.099 3.901 14 N -0.865 5.865 15 Si 0.841 3.159 16 H -0.263 1.263 17 H -0.266 1.266 18 H -0.239 1.239 19 N -0.417 5.417 20 C 0.130 3.870 21 C -0.104 4.104 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.107 4.107 25 C -0.102 4.102 26 C -0.137 4.137 27 C -0.111 4.111 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.169 0.831 34 H 0.273 0.727 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.245 -7.889 -0.567 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.130 4.130 4 C -0.128 4.128 5 C 0.009 3.991 6 C -0.138 4.138 7 C -0.129 4.129 8 N -0.197 5.197 9 C -0.124 4.124 10 S 0.280 5.720 11 C -0.667 4.667 12 H 0.140 0.860 13 C -0.111 4.111 14 N -0.500 5.500 15 Si 0.666 3.334 16 H -0.188 1.188 17 H -0.190 1.190 18 H -0.164 1.164 19 N -0.103 5.103 20 C 0.039 3.961 21 C -0.124 4.124 22 C -0.132 4.132 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.155 4.155 27 C -0.129 4.129 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.186 0.814 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.101 -8.613 -0.619 22.800 hybrid contribution -0.267 0.256 -0.025 0.370 sum -21.368 -8.357 -0.643 22.953 Atomic orbital electron populations 1.20749 0.91505 1.02468 1.02006 1.19916 0.95834 0.93241 1.01493 1.20866 0.93745 0.97403 1.01027 1.21054 0.93868 0.97040 1.00867 1.17905 0.88468 0.93644 0.99111 1.19500 0.90067 0.86674 1.17541 1.22420 0.88674 0.97719 1.04063 1.70774 1.20426 1.07090 1.21400 1.26199 0.88585 0.93746 1.03845 1.82909 0.91121 1.10166 1.87852 1.22543 0.90333 0.95943 1.57911 0.86026 1.24656 0.95249 0.97593 0.93554 1.69923 1.00933 1.32545 1.46643 0.87017 0.80844 0.85421 0.80159 1.18770 1.19016 1.16402 1.42803 1.05639 1.03718 1.58109 1.17590 1.00220 0.82794 0.95447 1.21196 0.98300 0.96725 0.96187 1.21012 1.00480 0.92325 0.99356 1.21244 0.98418 0.99772 0.93848 1.21058 0.98102 0.94988 0.98453 1.21304 0.99323 0.93380 0.98162 1.21785 0.94455 0.98283 1.00978 1.20861 0.93799 0.97294 1.00933 0.91481 0.91839 0.91755 0.86033 0.85564 0.81386 0.91610 0.85389 0.85226 0.85494 0.85081 0.84894 0.85035 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.00 36.01 0.36 -0.49 16 2 C -0.10 -1.12 5.89 -104.52 -0.62 -1.74 16 3 C -0.11 -1.25 9.68 -39.64 -0.38 -1.63 16 4 C -0.11 -1.42 9.58 -39.16 -0.38 -1.79 16 5 C 0.01 0.16 5.87 -104.97 -0.62 -0.46 16 6 C -0.02 -0.45 6.81 -81.80 -0.56 -1.01 16 7 C 0.02 0.48 11.26 -17.51 -0.20 0.28 16 8 N -0.48 -11.46 9.96 -13.01 -0.13 -11.59 16 9 C 0.24 5.58 7.88 -88.06 -0.69 4.89 16 10 S 0.04 1.08 19.29 -107.50 -2.07 -0.99 16 11 C -0.52 -14.98 9.90 30.87 0.31 -14.67 16 12 H 0.12 3.89 7.11 -52.49 -0.37 3.52 16 13 C 0.10 2.82 5.49 -17.49 -0.10 2.72 16 14 N -0.86 -25.68 13.97 55.48 0.78 -24.91 16 15 Si 0.84 19.94 27.74 -169.99 -4.71 15.22 16 16 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.24 -5.40 6.73 56.52 0.38 -5.02 16 19 N -0.42 -8.08 2.85 -56.89 -0.16 -8.24 16 20 C 0.13 2.12 3.67 -83.62 -0.31 1.82 16 21 C -0.10 -1.44 7.14 -39.40 -0.28 -1.72 16 22 C -0.11 -1.22 10.04 -39.61 -0.40 -1.62 16 23 C -0.11 -1.15 10.04 -39.55 -0.40 -1.54 16 24 C -0.11 -1.23 10.04 -39.61 -0.40 -1.62 16 25 C -0.10 -1.51 9.75 -39.40 -0.38 -1.89 16 26 C -0.14 -1.89 8.67 -39.16 -0.34 -2.23 16 27 C -0.11 -1.29 9.68 -39.64 -0.38 -1.67 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.43 8.08 -51.93 -0.42 0.02 16 30 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.13 1.46 7.07 -52.48 -0.37 1.09 16 33 H 0.17 2.70 7.32 -52.49 -0.38 2.31 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.13 1.84 3.70 -52.49 -0.19 1.64 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 360.37 15.07 5.43 5.43 Total: -1.00 -32.65 360.37 -11.33 -43.98 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.70 Total: 5.49 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -5.76 Total: -24.39 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.48 Total: -44.74 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.71 Total: 15.22 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.07 Total: -0.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.65 -11.33 -43.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007128261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.137 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds