Wall clock time and date at job start Tue Mar 31 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46677 * 2 1 4 4 C 1.35742 * 116.99978 * 179.97438 * 3 2 1 5 5 C 1.39020 * 119.88902 * 180.02562 * 4 3 2 6 6 C 1.37654 * 120.11594 * 180.02562 * 5 4 3 7 7 C 1.39983 * 119.88712 * 359.97438 * 6 5 4 8 8 C 1.46984 * 120.11729 * 179.97438 * 7 6 5 9 9 C 1.35030 * 119.99995 * 179.72513 * 8 7 6 10 10 C 1.46179 * 120.00011 * 180.27798 * 9 8 7 11 11 O 1.21731 * 119.99903 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00061 * 179.97438 * 10 9 8 13 13 C 1.39062 * 120.00275 * 175.71140 * 12 10 9 14 14 C 1.39528 * 119.84250 * 215.04346 * 13 12 10 15 15 C 1.36348 * 120.16629 * 179.72117 * 14 13 12 16 16 C 1.40887 * 119.83131 * 0.54887 * 15 14 13 17 17 C 1.41123 * 120.15915 * 179.70341 * 16 15 14 18 18 H 1.08006 * 119.99956 * 214.80336 * 17 16 15 19 19 C 1.39916 * 120.00263 * 34.80735 * 17 16 15 20 20 N 1.30869 * 119.99588 * 355.55102 * 19 17 16 21 21 Si 1.86793 * 120.00037 * 175.56154 * 19 17 16 22 22 H 1.48491 * 109.47626 * 59.99514 * 21 19 17 23 23 H 1.48504 * 109.46982 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47126 * 299.99210 * 21 19 17 25 25 C 1.40883 * 119.67977 * 359.72190 * 16 15 14 26 26 C 1.36346 * 119.83302 * 359.97438 * 25 16 15 27 27 C 1.39988 * 119.76913 * 0.25195 * 7 6 5 28 28 C 1.37661 * 119.88372 * 359.47051 * 27 7 6 29 29 H 1.09007 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47307 * 299.99702 * 1 2 3 31 31 H 1.08994 * 109.47172 * 59.99866 * 1 2 3 32 32 H 1.08993 * 109.47455 * 240.00014 * 2 1 3 33 33 H 1.09002 * 109.47017 * 119.99861 * 2 1 3 34 34 H 1.07998 * 119.93922 * 359.97438 * 5 4 3 35 35 H 1.08007 * 120.06132 * 180.02562 * 6 5 4 36 36 H 1.08000 * 119.99567 * 0.02562 * 8 7 6 37 37 H 1.08000 * 119.99851 * 0.27078 * 9 8 7 38 38 H 0.96998 * 119.99955 * 355.71539 * 12 10 9 39 39 H 1.07998 * 119.91758 * 359.97438 * 14 13 12 40 40 H 1.08004 * 120.08498 * 180.27430 * 15 14 13 41 41 H 0.96997 * 119.99761 * 180.02562 * 20 19 17 42 42 H 1.08006 * 120.08658 * 179.97438 * 25 16 15 43 43 H 1.07999 * 119.91604 * 179.97438 * 26 25 16 44 44 H 1.08000 * 120.05901 * 179.74982 * 27 7 6 45 45 H 1.07991 * 119.94245 * 180.25417 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3519 1.5252 0.0005 5 6 3.8807 2.8110 0.0011 6 6 5.2446 2.9968 0.0011 7 6 6.0996 1.8885 0.0011 8 6 7.5568 2.0811 0.0006 9 6 8.3794 1.0102 0.0062 10 6 9.8286 1.2018 0.0118 11 8 10.2938 2.3267 0.0109 12 7 10.6496 0.1330 0.0179 13 6 12.0259 0.3129 -0.0669 14 6 12.8055 -0.6120 -0.7622 15 6 14.1548 -0.4390 -0.8543 16 6 14.7630 0.6709 -0.2353 17 6 16.1598 0.8533 -0.3209 18 1 16.7006 1.2805 0.5107 19 6 16.8441 0.4808 -1.4830 20 7 16.2042 -0.1163 -2.4561 21 14 18.6708 0.8353 -1.6455 22 1 19.4081 0.1436 -0.5578 23 1 19.1552 0.3448 -2.9608 24 1 18.9017 2.2990 -1.5470 25 6 13.9700 1.5976 0.4699 26 6 12.6211 1.4149 0.5482 27 6 5.5621 0.5959 -0.0043 28 6 4.1966 0.4210 0.0015 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2202 3.6654 0.0007 35 1 5.6545 3.9961 0.0020 36 1 7.9695 3.0791 0.0006 37 1 7.9666 0.0122 0.0066 38 1 10.2804 -0.7617 0.0813 39 1 12.3385 -1.4649 -1.2321 40 1 14.7565 -1.1534 -1.3966 41 1 16.6787 -0.3749 -3.2616 42 1 14.4294 2.4506 0.9473 43 1 12.0120 2.1242 1.0888 44 1 6.2174 -0.2625 -0.0084 45 1 3.7809 -0.5757 0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008126436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:32 Heat of formation + Delta-G solvation = -13.910283 kcal Electronic energy + Delta-G solvation = -26027.303892 eV Core-core repulsion = 22167.951653 eV Total energy + Delta-G solvation = -3859.352239 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.52250 -39.62383 -38.15148 -37.20963 -34.47364 -33.78134 -32.87818 -32.05431 -31.38463 -29.61387 -29.35305 -28.43672 -25.37084 -24.46217 -23.85333 -22.35389 -21.63499 -21.03781 -20.18019 -19.14017 -18.73102 -17.42290 -17.12495 -16.56403 -16.52581 -15.92987 -15.45345 -15.13861 -14.87693 -14.48646 -14.23388 -13.92446 -13.87541 -13.83534 -13.43909 -13.13342 -12.97974 -12.64611 -12.59956 -12.43551 -12.14141 -12.10837 -11.79382 -11.67646 -11.36955 -11.33320 -11.11708 -11.03611 -10.99664 -10.71473 -10.04086 -9.95073 -9.47743 -9.41385 -9.38516 -9.12312 -8.84417 -8.04863 -7.52548 -6.82501 -6.60165 -4.32197 0.44755 1.03267 1.90480 2.72924 2.75105 3.09881 3.11402 3.13094 3.18363 3.48272 3.76464 3.86922 3.99791 4.32441 4.41758 4.47466 4.55814 4.67607 4.72485 4.73577 4.90851 4.97449 5.07511 5.11014 5.27754 5.28320 5.44767 5.52922 5.66883 5.68377 5.82321 5.96540 5.97810 6.20433 6.31665 6.38339 6.48886 6.50458 6.78824 6.96786 7.00918 7.09080 7.23598 7.32365 7.66188 7.78188 7.90561 8.08355 8.29767 8.34165 8.64418 8.79627 8.94316 9.02713 10.30813 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.038319 B = 0.001534 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.536107 B =18248.060491 C =18633.331530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.316 6.316 4 C 0.136 3.864 5 C -0.154 4.154 6 C -0.057 4.057 7 C -0.105 4.105 8 C -0.030 4.030 9 C -0.202 4.202 10 C 0.528 3.472 11 O -0.537 6.537 12 N -0.645 5.645 13 C 0.003 3.997 14 C -0.121 4.121 15 C -0.141 4.141 16 C 0.100 3.900 17 C -0.461 4.461 18 H 0.075 0.925 19 C 0.070 3.930 20 N -0.812 5.812 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.206 4.206 26 C -0.085 4.085 27 C -0.062 4.062 28 C -0.211 4.211 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.396 0.604 39 H 0.091 0.909 40 H 0.132 0.868 41 H 0.278 0.722 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.131 0.869 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.710 -2.467 3.224 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.229 6.229 4 C 0.090 3.910 5 C -0.173 4.173 6 C -0.075 4.075 7 C -0.105 4.105 8 C -0.050 4.050 9 C -0.223 4.223 10 C 0.318 3.682 11 O -0.417 6.417 12 N -0.286 5.286 13 C -0.090 4.090 14 C -0.141 4.141 15 C -0.161 4.161 16 C 0.097 3.903 17 C -0.492 4.492 18 H 0.094 0.906 19 C -0.145 4.145 20 N -0.439 5.439 21 Si 0.741 3.259 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.226 4.226 26 C -0.104 4.104 27 C -0.080 4.080 28 C -0.230 4.230 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.229 0.771 39 H 0.109 0.891 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.149 0.851 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -26.501 -1.649 2.969 26.717 hybrid contribution 0.649 -0.643 -0.294 0.960 sum -25.852 -2.293 2.675 26.091 Atomic orbital electron populations 1.21783 0.92617 1.02976 1.03590 1.22822 0.95984 0.81823 1.01595 1.86034 1.19133 1.29539 1.88237 1.19204 0.82221 0.94195 0.95373 1.20365 0.95187 0.94804 1.06950 1.21219 0.91932 0.98778 0.95549 1.18994 0.92964 0.93205 1.05377 1.22251 0.90445 0.99900 0.92367 1.22967 0.93098 0.99609 1.06617 1.18246 0.86753 0.85117 0.78096 1.90799 1.77412 1.23591 1.49852 1.42867 1.05871 1.08534 1.71369 1.17274 0.80666 1.02088 1.08962 1.20325 0.95015 0.98733 1.00033 1.21182 0.92621 0.98980 1.03348 1.17726 0.93427 0.89348 0.89775 1.19468 0.92597 1.36532 1.00598 0.90645 1.25880 1.00425 0.92868 0.95360 1.69754 1.37572 1.30888 1.05711 0.86245 0.81850 0.79759 0.78055 1.19063 1.20444 1.19095 1.20809 0.92759 1.00383 1.08638 1.20418 0.94632 0.96715 0.98682 1.21243 0.94332 0.96817 0.95637 1.21171 0.94196 0.98103 1.09489 0.90266 0.91465 0.91465 0.91857 0.91864 0.84898 0.84585 0.84598 0.85804 0.77070 0.89091 0.85044 0.91100 0.88589 0.87412 0.85080 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.28 37.16 0.38 -0.24 16 2 C 0.05 0.30 5.45 37.16 0.20 0.50 16 3 O -0.32 -2.78 10.13 -18.93 -0.19 -2.97 16 4 C 0.14 1.27 6.70 -39.00 -0.26 1.01 16 5 C -0.15 -1.40 9.97 -39.50 -0.39 -1.80 16 6 C -0.06 -0.53 9.79 -39.14 -0.38 -0.91 16 7 C -0.11 -1.10 5.87 -105.05 -0.62 -1.72 16 8 C -0.03 -0.36 9.45 -37.18 -0.35 -0.72 16 9 C -0.20 -2.63 9.41 -37.54 -0.35 -2.98 16 10 C 0.53 9.49 7.56 -13.07 -0.10 9.40 16 11 O -0.54 -11.85 13.64 5.16 0.07 -11.78 16 12 N -0.64 -11.59 5.29 -11.07 -0.06 -11.64 16 13 C 0.00 0.06 6.30 -83.62 -0.53 -0.47 16 14 C -0.12 -2.79 9.90 -39.78 -0.39 -3.18 16 15 C -0.14 -3.67 8.61 -39.26 -0.34 -4.01 16 16 C 0.10 2.71 5.55 -106.80 -0.59 2.11 16 17 C -0.46 -12.42 9.02 -37.86 -0.34 -12.76 16 18 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 19 C 0.07 1.78 5.42 -17.33 -0.09 1.68 16 20 N -0.81 -21.29 10.59 55.55 0.59 -20.70 16 21 Si 0.92 19.15 29.56 -169.99 -5.03 14.12 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.21 -5.30 9.74 -39.26 -0.38 -5.68 16 26 C -0.08 -2.07 8.61 -39.78 -0.34 -2.41 16 27 C -0.06 -0.58 9.40 -39.14 -0.37 -0.95 16 28 C -0.21 -1.81 9.01 -39.50 -0.36 -2.16 16 29 H 0.08 0.19 8.14 -51.92 -0.42 -0.23 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 33 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 36 H 0.14 1.76 7.52 -52.49 -0.39 1.37 16 37 H 0.12 1.20 6.07 -52.49 -0.32 0.88 16 38 H 0.40 5.49 8.79 -40.82 -0.36 5.13 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.13 3.51 6.13 -52.48 -0.32 3.19 16 41 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 42 H 0.10 2.34 8.06 -52.48 -0.42 1.92 16 43 H 0.11 2.61 6.22 -52.49 -0.33 2.28 16 44 H 0.13 1.00 6.16 -52.49 -0.32 0.67 16 45 H 0.13 0.82 6.27 -52.49 -0.33 0.49 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -32.11 381.85 -10.14 -42.25 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -5.67 Total: 10.25 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -5.61 Total: -25.29 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.53 Total: -32.35 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.12 Total: -14.75 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.11 -10.14 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.343 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds