Wall clock time and date at job start Tue Mar 31 2020 05:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86800 * 119.99505 * 2 1 4 4 H 1.48504 * 109.46838 * 269.99635 * 3 2 1 5 5 H 1.48501 * 109.47605 * 29.99605 * 3 2 1 6 6 H 1.48503 * 109.47226 * 149.99974 * 3 2 1 7 7 C 1.39059 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00361 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99983 * 359.97438 * 7 2 1 10 10 N 1.40024 * 126.05013 * 0.02907 * 9 7 2 11 11 C 1.31971 * 108.41783 * 179.97438 * 10 9 7 12 12 C 1.48234 * 125.83783 * 179.97438 * 11 10 9 13 13 C 1.39446 * 120.13602 * 133.06498 * 12 11 10 14 14 C 1.37959 * 119.88059 * 179.97438 * 13 12 11 15 15 C 1.38381 * 120.16246 * 359.97438 * 14 13 12 16 16 C 1.38294 * 120.27486 * 0.03784 * 15 14 13 17 17 C 1.38134 * 120.11730 * 359.96410 * 16 15 14 18 18 Cl 1.73605 * 120.08376 * 179.97438 * 17 16 15 19 19 C 1.40613 * 108.32107 * 0.26873 * 11 10 9 20 20 C 1.36141 * 108.11865 * 359.55494 * 19 11 10 21 21 C 1.47768 * 110.10883 * 180.25476 * 20 19 11 22 22 C 1.39841 * 131.45469 * 180.25169 * 21 20 19 23 23 C 1.37870 * 119.89355 * 180.02562 * 22 21 20 24 24 C 1.38400 * 120.32767 * 0.02777 * 23 22 21 25 25 C 1.38444 * 120.14033 * 359.97411 * 24 23 22 26 26 C 1.37686 * 119.99938 * 0.02562 * 25 24 23 27 27 C 1.50905 * 132.68619 * 179.97438 * 26 25 24 28 28 H 0.97000 * 120.00676 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.05966 * 359.70876 * 13 12 11 30 30 H 1.08006 * 119.91626 * 180.02562 * 14 13 12 31 31 H 1.07997 * 119.86118 * 180.02562 * 15 14 13 32 32 H 1.08000 * 119.94221 * 179.97438 * 16 15 14 33 33 H 1.07996 * 120.05132 * 0.02562 * 22 21 20 34 34 H 1.07999 * 119.83385 * 180.02562 * 23 22 21 35 35 H 1.07993 * 119.92537 * 180.02562 * 24 23 22 36 36 H 1.07999 * 119.99954 * 179.97438 * 25 24 23 37 37 H 1.08996 * 110.19396 * 299.11265 * 27 26 25 38 38 H 1.09001 * 110.19392 * 60.90410 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2464 1.6178 0.0000 4 1 2.4939 2.0464 -1.4001 5 1 1.4438 2.6528 0.6999 6 1 3.5440 1.4404 0.7000 7 6 2.0079 -1.2042 0.0005 8 1 3.0879 -1.2042 0.0010 9 7 1.3233 -2.3903 0.0016 10 7 -0.0691 -2.5379 0.0017 11 6 -0.3517 -3.8270 0.0023 12 6 -1.7114 -4.4175 0.0031 13 6 -2.0259 -5.4520 -0.8774 14 6 -3.2928 -5.9981 -0.8718 15 6 -4.2512 -5.5220 0.0055 16 6 -3.9465 -4.4961 0.8814 17 6 -2.6817 -3.9410 0.8855 18 17 -2.3003 -2.6527 1.9850 19 6 0.8575 -4.5446 0.0089 20 6 1.8819 -3.6480 0.0022 21 6 3.1781 -4.3575 0.0026 22 6 4.4935 -3.8827 0.0019 23 6 5.5456 -4.7736 0.0020 24 6 5.3070 -6.1369 0.0023 25 6 4.0078 -6.6152 0.0030 26 6 2.9498 -5.7340 0.0028 27 6 1.4537 -5.9316 0.0029 28 1 -0.4851 0.8400 -0.0004 29 1 -1.2803 -5.8222 -1.5655 30 1 -3.5369 -6.7997 -1.5533 31 1 -5.2414 -5.9533 0.0060 32 1 -4.6988 -4.1284 1.5635 33 1 4.6848 -2.8198 0.0013 34 1 6.5611 -4.4059 0.0019 35 1 6.1360 -6.8290 0.0028 36 1 3.8242 -7.6794 0.0027 37 1 1.1459 -6.4744 -0.8907 38 1 1.1459 -6.4739 0.8970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008716969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:24 Heat of formation + Delta-G solvation = 134.900613 kcal Electronic energy + Delta-G solvation = -25316.414419 eV Core-core repulsion = 21730.276742 eV Total energy + Delta-G solvation = -3586.137677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 336.072 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.46209 -38.72987 -38.04549 -35.62873 -34.40913 -33.23254 -31.86474 -30.56108 -30.31613 -29.33047 -27.52283 -26.27738 -24.68759 -22.78192 -22.29724 -21.77527 -20.58018 -19.48302 -18.81140 -17.38555 -16.68820 -15.82784 -15.28559 -14.92207 -14.86471 -14.59319 -14.37926 -14.16669 -13.55567 -13.41709 -13.13951 -12.96472 -12.78636 -12.65780 -12.31972 -12.00660 -11.68837 -11.44516 -11.32176 -11.28320 -11.08070 -10.97676 -10.85078 -10.71874 -10.41479 -10.26424 -10.00530 -9.61534 -9.14949 -8.92906 -8.52749 -8.36024 -8.20218 -7.67356 -6.88687 -6.75785 -4.37440 1.52462 1.62527 1.64476 1.87543 2.88838 2.89536 2.96461 3.01648 3.44192 3.65665 3.71660 4.16882 4.31789 4.49474 4.91614 5.00796 5.14878 5.19146 5.28340 5.37527 5.46896 5.53410 5.68247 5.77453 5.82619 5.91995 6.05534 6.09041 6.21013 6.32876 6.36703 6.44867 6.49116 6.57816 6.63347 6.72203 6.84333 6.86803 6.95163 6.98899 7.15223 7.28567 7.44749 7.57976 7.69883 7.97700 8.43025 9.16427 9.43073 10.17454 Molecular weight = 336.07amu Principal moments of inertia in cm(-1) A = 0.008187 B = 0.005899 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3419.086804 B = 4745.751179 C = 7669.511835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.044 3.956 3 Si 0.934 3.066 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.299 4.299 8 H 0.119 0.881 9 N -0.109 5.109 10 N -0.216 5.216 11 C 0.018 3.982 12 C 0.043 3.957 13 C -0.101 4.101 14 C -0.121 4.121 15 C -0.127 4.127 16 C -0.117 4.117 17 C -0.025 4.025 18 Cl -0.048 7.048 19 C -0.244 4.244 20 C -0.043 4.043 21 C 0.027 3.973 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.145 4.145 25 C -0.099 4.099 26 C -0.103 4.103 27 C 0.012 3.988 28 H 0.279 0.721 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -8.791 -0.084 8.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.176 4.176 3 Si 0.757 3.243 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.434 4.434 8 H 0.136 0.864 9 N 0.125 4.875 10 N -0.050 5.050 11 C -0.129 4.129 12 C 0.040 3.960 13 C -0.121 4.121 14 C -0.139 4.139 15 C -0.146 4.146 16 C -0.136 4.136 17 C -0.053 4.053 18 Cl -0.018 7.018 19 C -0.258 4.258 20 C -0.168 4.168 21 C 0.025 3.975 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.164 4.164 25 C -0.118 4.118 26 C -0.105 4.105 27 C -0.025 4.025 28 H 0.090 0.910 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.224 -7.318 0.026 7.420 hybrid contribution 0.816 0.312 0.105 0.880 sum -0.408 -7.007 0.131 7.020 Atomic orbital electron populations 1.70180 1.06088 1.28594 1.32285 1.25713 0.95817 1.00431 0.95618 0.85815 0.79623 0.79595 0.79268 1.19294 1.19810 1.18538 1.20094 0.92054 0.80773 1.50499 0.86368 1.44706 1.03454 1.02507 1.36864 1.78863 0.87830 1.12009 1.26280 1.19470 0.89708 0.91689 1.12066 1.17891 0.90360 0.94099 0.93601 1.21138 0.96655 0.96109 0.98184 1.21025 0.93307 1.00259 0.99306 1.20964 0.99399 0.97496 0.96738 1.20911 0.94837 0.97497 1.00366 1.21139 0.94612 0.93829 0.95722 1.98396 1.94442 1.47924 1.61082 1.19958 0.91810 0.94435 1.19592 1.19496 0.93010 0.85797 1.18450 1.18539 0.89945 0.92566 0.96439 1.20939 0.91376 0.99672 1.02265 1.20834 0.98156 0.93269 1.01322 1.20894 0.96037 0.95288 1.04184 1.20196 0.91443 0.98495 1.01624 1.20368 0.95521 0.93151 1.01442 1.18636 0.88864 0.94194 1.00830 0.90994 0.85412 0.85969 0.85934 0.85610 0.86459 0.86642 0.86621 0.86574 0.90773 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.63 11.80 55.50 0.66 -18.98 16 2 C 0.04 1.09 5.50 -17.49 -0.10 0.99 16 3 Si 0.93 18.37 29.55 -169.99 -5.02 13.35 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.30 -7.72 10.25 -14.96 -0.15 -7.88 16 8 H 0.12 2.81 7.35 -52.49 -0.39 2.42 16 9 N -0.11 -2.93 3.75 -8.30 -0.03 -2.96 16 10 N -0.22 -5.84 9.35 33.39 0.31 -5.53 16 11 C 0.02 0.43 6.06 -82.80 -0.50 -0.07 16 12 C 0.04 0.89 5.82 -104.85 -0.61 0.28 16 13 C -0.10 -1.73 9.69 -39.23 -0.38 -2.11 16 14 C -0.12 -1.68 10.03 -39.63 -0.40 -2.07 16 15 C -0.13 -1.72 10.04 -39.51 -0.40 -2.12 16 16 C -0.12 -1.84 9.82 -39.60 -0.39 -2.23 16 17 C -0.03 -0.49 6.35 -39.13 -0.25 -0.74 16 18 Cl -0.05 -1.01 27.23 -51.86 -1.41 -2.42 16 19 C -0.24 -5.64 6.93 -104.35 -0.72 -6.37 16 20 C -0.04 -1.05 7.57 -82.13 -0.62 -1.67 16 21 C 0.03 0.58 6.21 -104.92 -0.65 -0.08 16 22 C -0.12 -2.31 10.10 -39.12 -0.40 -2.70 16 23 C -0.12 -1.82 10.02 -39.66 -0.40 -2.21 16 24 C -0.15 -2.09 10.05 -39.45 -0.40 -2.49 16 25 C -0.10 -1.53 10.03 -39.71 -0.40 -1.93 16 26 C -0.10 -1.92 6.34 -104.24 -0.66 -2.58 16 27 C 0.01 0.23 6.74 -28.80 -0.19 0.04 16 28 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.12 2.13 7.57 -52.49 -0.40 1.74 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -30.17 346.46 -11.61 -41.79 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -3.72 Total: 5.48 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -7.61 Total: -35.94 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.94 Total: -27.47 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.35 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.41 Total: -2.42 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.17 -11.61 -41.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008716969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.687 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds