Wall clock time and date at job start Tue Mar 31 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31722 * 1 3 3 Si 1.86794 * 120.00287 * 2 1 4 4 H 1.48501 * 109.46707 * 269.99207 * 3 2 1 5 5 H 1.48489 * 109.47356 * 29.99115 * 3 2 1 6 6 H 1.48497 * 109.47200 * 149.99562 * 3 2 1 7 7 C 1.38530 * 119.99476 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99652 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00030 * 179.97438 * 9 7 2 11 11 N 1.31551 * 126.37296 * 359.97438 * 10 9 7 12 12 N 1.28505 * 110.10716 * 179.74647 * 11 10 9 13 13 C 1.31789 * 109.94378 * 0.45767 * 12 11 10 14 14 C 1.47006 * 126.48033 * 179.81906 * 13 12 11 15 15 C 1.36255 * 125.33315 * 344.68937 * 14 13 12 16 16 C 1.37750 * 114.42268 * 179.97438 * 15 14 13 17 17 C 1.33713 * 115.19539 * 359.97438 * 16 15 14 18 18 S 1.75828 * 109.97634 * 359.77300 * 17 16 15 19 19 N 1.36940 * 126.37406 * 180.02562 * 10 9 7 20 20 C 1.46499 * 127.17284 * 0.02562 * 19 10 9 21 21 C 1.53005 * 109.46619 * 269.95486 * 20 19 10 22 22 H 1.08998 * 110.33133 * 307.25109 * 21 20 19 23 23 C 1.54484 * 110.36762 * 185.00430 * 21 20 19 24 24 C 1.54510 * 104.05862 * 217.18878 * 23 21 20 25 25 C 1.54479 * 104.06339 * 0.02562 * 24 23 21 26 26 O 1.44420 * 104.80472 * 23.97806 * 25 24 23 27 27 H 0.97007 * 119.99416 * 0.02562 * 1 2 3 28 28 H 1.07994 * 122.78839 * 359.97438 * 15 14 13 29 29 H 1.07996 * 122.40319 * 180.02562 * 16 15 14 30 30 H 1.08002 * 125.01034 * 179.97438 * 17 16 15 31 31 H 1.08999 * 109.47262 * 29.95281 * 20 19 10 32 32 H 1.09005 * 109.47090 * 149.95987 * 20 19 10 33 33 H 1.08995 * 110.51195 * 335.83172 * 23 21 20 34 34 H 1.08997 * 110.51371 * 98.41386 * 23 21 20 35 35 H 1.09006 * 110.50870 * 118.64462 * 24 23 21 36 36 H 1.08997 * 110.51347 * 241.35318 * 24 23 21 37 37 H 1.09004 * 110.37223 * 142.81140 * 25 24 23 38 38 H 1.08999 * 110.37222 * 265.14523 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3172 0.0000 0.0000 3 14 2.2513 1.6176 0.0000 4 1 2.4989 2.0461 -1.4001 5 1 1.4488 2.6526 0.6998 6 1 3.5488 1.4401 0.7001 7 6 2.0098 -1.1998 0.0005 8 1 3.0897 -1.1998 0.0010 9 16 1.1287 -2.7256 0.0005 10 6 2.4783 -3.8583 0.0005 11 7 3.7568 -3.5485 0.0001 12 7 4.4704 -4.6172 0.0056 13 6 3.6897 -5.6790 0.0000 14 6 4.1243 -7.0833 -0.0002 15 6 5.3828 -7.5187 -0.2884 16 6 5.5423 -8.8852 -0.2205 17 6 4.4445 -9.5704 0.1162 18 16 3.1033 -8.4643 0.3795 19 7 2.3916 -5.2249 0.0000 20 6 1.1706 -6.0344 -0.0011 21 6 0.7451 -6.3176 1.4411 22 1 1.5755 -6.7436 2.0042 23 6 -0.4682 -7.2735 1.4659 24 6 -1.3297 -6.7561 2.6396 25 6 -0.5353 -5.5484 3.1844 26 8 0.2739 -5.1070 2.0726 27 1 -0.4850 0.8402 -0.0004 28 1 6.1884 -6.8481 -0.5483 29 1 6.4864 -9.3686 -0.4237 30 1 4.3904 -10.6445 0.2152 31 1 0.3761 -5.4929 -0.5146 32 1 1.3597 -6.9765 -0.5157 33 1 -1.0222 -7.2119 0.5293 34 1 -0.1438 -8.2977 1.6501 35 1 -2.3097 -6.4387 2.2830 36 1 -1.4315 -7.5241 3.4063 37 1 -1.2159 -4.7562 3.4966 38 1 0.0983 -5.8553 4.0166 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008734693.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:16 Heat of formation + Delta-G solvation = 62.147875 kcal Electronic energy + Delta-G solvation = -24347.476794 eV Core-core repulsion = 20830.246068 eV Total energy + Delta-G solvation = -3517.230726 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.91180 -39.35456 -37.60080 -34.73960 -32.62127 -32.11220 -31.39010 -30.10711 -28.07948 -25.93106 -25.64331 -24.39456 -22.45042 -21.92084 -21.22785 -21.03558 -18.88434 -18.09039 -17.74145 -16.59142 -16.17567 -15.85856 -15.60570 -15.47502 -15.10261 -14.89400 -14.67140 -13.81638 -13.67898 -13.13875 -13.03025 -12.79561 -12.67427 -12.46288 -12.16538 -11.91835 -11.69942 -11.31606 -11.20195 -11.11821 -11.03829 -10.99403 -10.78158 -10.61503 -10.16248 -9.99738 -9.82322 -9.76169 -9.55293 -9.17805 -8.76182 -8.60029 -8.22925 -6.63744 -6.43181 -4.14746 0.61653 1.39645 1.82614 2.27959 2.47322 2.89318 3.22108 3.23220 3.27265 3.37284 3.69628 3.84350 4.05580 4.42878 4.48170 4.68026 4.76086 4.82355 4.97019 4.98677 5.01148 5.11730 5.21073 5.27098 5.32557 5.41691 5.55383 5.59349 5.64440 5.81209 5.83255 5.87831 5.95948 6.09896 6.27063 6.32102 6.46504 6.68927 6.89589 7.30559 7.60878 8.40948 9.08937 9.42366 10.64519 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.012473 B = 0.004404 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.323588 B = 6356.585624 C = 8279.876693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.076 3.924 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.104 0.896 9 S 0.173 5.827 10 C 0.190 3.810 11 N -0.308 5.308 12 N -0.255 5.255 13 C 0.184 3.816 14 C -0.086 4.086 15 C -0.112 4.112 16 C -0.123 4.123 17 C -0.226 4.226 18 S 0.110 5.890 19 N -0.475 5.475 20 C 0.113 3.887 21 C 0.056 3.944 22 H 0.072 0.928 23 C -0.146 4.146 24 C -0.152 4.152 25 C 0.042 3.958 26 O -0.340 6.340 27 H 0.273 0.727 28 H 0.151 0.849 29 H 0.143 0.857 30 H 0.165 0.835 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 -20.532 2.569 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.133 4.133 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.687 4.687 8 H 0.122 0.878 9 S 0.408 5.592 10 C -0.179 4.179 11 N -0.155 5.155 12 N -0.099 5.099 13 C -0.082 4.082 14 C -0.206 4.206 15 C -0.145 4.145 16 C -0.153 4.153 17 C -0.363 4.363 18 S 0.372 5.628 19 N -0.173 5.173 20 C -0.011 4.011 21 C -0.003 4.003 22 H 0.090 0.910 23 C -0.185 4.185 24 C -0.190 4.190 25 C -0.036 4.036 26 O -0.258 6.258 27 H 0.083 0.917 28 H 0.168 0.832 29 H 0.161 0.839 30 H 0.182 0.818 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.933 -19.610 2.912 20.041 hybrid contribution 2.044 0.229 -0.251 2.072 sum -0.889 -19.382 2.661 19.584 Atomic orbital electron populations 1.69993 1.05995 1.28335 1.46956 1.25033 0.95168 0.99563 0.93493 0.85945 0.79670 0.80091 0.78685 1.19952 1.20704 1.19004 1.23290 0.97442 0.89728 1.58208 0.87775 1.83581 0.96902 0.94428 1.84322 1.28508 1.02165 0.85281 1.01971 1.74787 0.99057 1.18146 1.23511 1.74363 1.26385 0.94012 1.15096 1.21333 0.81310 0.92974 1.12608 1.21632 0.97567 0.91449 1.09918 1.20596 0.96198 0.95371 1.02358 1.20027 0.99476 0.93257 1.02581 1.25751 0.96528 1.03193 1.10803 1.84041 1.13945 0.96211 1.68573 1.46234 1.05889 1.05993 1.59143 1.22010 0.86000 0.96212 0.96890 1.23433 0.96754 0.86890 0.93246 0.91017 1.22928 0.96058 0.99330 1.00173 1.22924 0.99994 0.98299 0.97751 1.23423 0.93386 0.96708 0.90049 1.89480 1.67383 1.25599 1.43314 0.91706 0.83180 0.83910 0.81788 0.87139 0.88007 0.90050 0.90192 0.90322 0.90669 0.88622 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 13.22 55.48 0.73 -23.97 16 2 C 0.08 2.11 5.49 -17.49 -0.10 2.02 16 3 Si 0.93 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.37 9.36 30.84 0.29 -15.08 16 8 H 0.10 3.08 6.92 -52.49 -0.36 2.72 16 9 S 0.17 4.43 21.13 -107.50 -2.27 2.15 16 10 C 0.19 4.59 8.07 -87.74 -0.71 3.88 16 11 N -0.31 -8.03 11.02 30.80 0.34 -7.69 16 12 N -0.26 -5.99 12.22 32.47 0.40 -5.60 16 13 C 0.18 3.67 7.87 -153.75 -1.21 2.46 16 14 C -0.09 -1.34 6.38 -36.74 -0.23 -1.57 16 15 C -0.11 -1.52 10.15 -40.47 -0.41 -1.93 16 16 C -0.12 -1.29 10.15 -41.35 -0.42 -1.71 16 17 C -0.23 -2.17 11.21 29.15 0.33 -1.85 16 18 S 0.11 1.25 19.48 -107.50 -2.09 -0.85 16 19 N -0.47 -9.44 2.84 -114.13 -0.32 -9.76 16 20 C 0.11 1.71 4.87 -4.04 -0.02 1.69 16 21 C 0.06 0.78 3.17 -25.95 -0.08 0.69 16 22 H 0.07 1.02 7.43 -51.93 -0.39 0.63 16 23 C -0.15 -1.41 6.63 -25.16 -0.17 -1.58 16 24 C -0.15 -1.42 7.09 -25.16 -0.18 -1.60 16 25 C 0.04 0.52 7.63 37.93 0.29 0.81 16 26 O -0.34 -5.76 11.09 -35.23 -0.39 -6.15 16 27 H 0.27 7.16 8.32 -40.82 -0.34 6.82 16 28 H 0.15 2.06 8.06 -52.49 -0.42 1.63 16 29 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.11 1.69 7.86 -51.93 -0.41 1.28 16 32 H 0.10 1.26 6.10 -51.93 -0.32 0.94 16 33 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -33.71 349.32 -10.39 -44.10 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.40 Total: -0.34 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.62 Total: -13.77 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 1.15 Total: -47.02 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.39 Total: -6.15 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -4.37 Total: 1.31 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.71 -10.39 -44.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008734693.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.251 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds