Wall clock time and date at job start Tue Mar 31 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48499 * 109.46732 * 269.99300 * 3 2 1 5 5 H 1.48499 * 109.47281 * 29.99429 * 3 2 1 6 6 H 1.48498 * 109.47259 * 149.99688 * 3 2 1 7 7 C 1.38758 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99601 * 180.02562 * 7 2 1 9 9 O 1.34920 * 119.99871 * 0.02562 * 7 2 1 10 10 C 1.34312 * 116.99704 * 179.97438 * 9 7 2 11 11 O 1.21207 * 119.99927 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99656 * 180.02562 * 10 9 7 13 13 H 1.08999 * 109.52705 * 299.92204 * 12 10 9 14 14 C 1.53040 * 109.50026 * 179.83955 * 12 10 9 15 15 C 1.53037 * 109.54487 * 178.68588 * 14 12 10 16 16 C 1.53192 * 109.31115 * 61.36432 * 15 14 12 17 17 N 1.46927 * 108.77604 * 305.36849 * 16 15 14 18 18 C 1.34779 * 120.62660 * 233.60798 * 17 16 15 19 19 O 1.21562 * 119.99784 * 174.16728 * 18 17 16 20 20 C 1.47779 * 120.00408 * 354.16843 * 18 17 16 21 21 C 1.39623 * 120.12781 * 318.63736 * 20 18 17 22 22 C 1.37894 * 119.86162 * 179.69839 * 21 20 18 23 23 C 1.38509 * 120.13599 * 0.57817 * 22 21 20 24 24 Cl 1.73596 * 119.87035 * 179.74299 * 23 22 21 25 25 C 1.38517 * 120.26199 * 359.71413 * 23 22 21 26 26 C 1.37896 * 120.13281 * 359.97438 * 25 23 22 27 27 C 1.46918 * 118.73963 * 53.61092 * 17 16 15 28 28 H 0.97005 * 119.99912 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46191 * 298.71182 * 14 12 10 30 30 H 1.09009 * 109.45707 * 58.66196 * 14 12 10 31 31 H 1.08999 * 109.49862 * 181.31706 * 15 14 12 32 32 H 1.09005 * 109.49642 * 301.38440 * 15 14 12 33 33 H 1.09002 * 109.58591 * 65.15672 * 16 15 14 34 34 H 1.09003 * 109.58432 * 185.58089 * 16 15 14 35 35 H 1.07997 * 120.06939 * 359.97438 * 21 20 18 36 36 H 1.08007 * 119.93291 * 180.29680 * 22 21 20 37 37 H 1.08001 * 119.93228 * 180.02562 * 25 23 22 38 38 H 1.07994 * 120.06780 * 180.02562 * 26 25 23 39 39 H 1.09003 * 109.58755 * 186.60425 * 27 17 16 40 40 H 1.08994 * 109.59129 * 66.17317 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4960 2.0463 -1.4001 5 1 1.4458 2.6527 0.6999 6 1 3.5459 1.4403 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2755 -3.4330 0.0010 12 6 1.3809 -4.8392 0.0000 13 1 0.7586 -4.9314 0.8901 14 6 2.4343 -5.9494 -0.0040 15 6 1.7409 -7.3132 0.0285 16 6 0.8701 -7.4687 -1.2222 17 7 -0.0497 -6.3258 -1.3031 18 6 -1.3780 -6.5206 -1.4226 19 8 -2.1374 -5.5722 -1.3820 20 6 -1.9112 -7.8869 -1.6032 21 6 -1.2622 -8.7861 -2.4515 22 6 -1.7610 -10.0617 -2.6110 23 6 -2.9102 -10.4479 -1.9412 24 17 -3.5359 -12.0533 -2.1523 25 6 -3.5619 -9.5582 -1.1030 26 6 -3.0690 -8.2820 -0.9304 27 6 0.5060 -4.9668 -1.2511 28 1 -0.4850 0.8401 -0.0004 29 1 3.0406 -5.8716 -0.9065 30 1 3.0739 -5.8461 0.8727 31 1 2.4920 -8.1029 0.0493 32 1 1.1156 -7.3823 0.9187 33 1 1.5042 -7.4909 -2.1085 34 1 0.2980 -8.3942 -1.1563 35 1 -0.3688 -8.4847 -2.9781 36 1 -1.2571 -10.7598 -3.2632 37 1 -4.4574 -9.8650 -0.5830 38 1 -3.5777 -7.5893 -0.2763 39 1 -0.3063 -4.2414 -1.2044 40 1 1.1104 -4.7849 -2.1397 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009183138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:28 Heat of formation + Delta-G solvation = -93.772516 kcal Electronic energy + Delta-G solvation = -26300.502116 eV Core-core repulsion = 22299.420846 eV Total energy + Delta-G solvation = -4001.081270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.091 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81258 -39.41000 -38.63495 -37.19273 -36.78973 -35.19041 -33.07289 -32.17628 -31.68757 -31.47365 -30.69195 -25.90359 -25.69903 -24.13198 -23.40069 -22.94497 -21.56979 -19.85183 -19.26976 -17.74904 -17.69573 -17.19527 -16.46879 -16.31748 -15.80125 -15.20117 -14.98287 -14.84435 -14.42230 -14.26150 -14.16520 -13.96103 -13.83020 -13.69228 -13.41709 -12.91138 -12.89692 -12.50146 -12.23698 -11.97981 -11.86818 -11.64362 -11.41203 -11.25267 -11.12109 -10.92987 -10.83444 -10.50198 -10.41798 -10.37409 -9.98308 -9.77616 -9.47828 -9.10424 -9.04726 -8.64110 -8.56537 -6.39033 -4.07743 0.40590 0.83961 1.66703 2.53892 2.79498 3.12359 3.19786 3.25781 3.31332 3.51743 3.92939 4.22201 4.33281 4.41424 4.45674 4.77102 4.85134 4.86844 4.91451 4.95267 5.07115 5.15768 5.26966 5.29904 5.46359 5.48569 5.58038 5.64790 5.74570 5.76773 5.82585 5.89908 6.00008 6.13301 6.23836 6.30438 6.43120 6.46473 6.82668 7.32083 7.40329 7.95789 8.07821 8.70136 9.08807 9.85647 10.78233 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.002388 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.296549 B =11720.970333 C =12571.637351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.384 4.384 8 H 0.095 0.905 9 O -0.209 6.209 10 C 0.401 3.599 11 O -0.554 6.554 12 C -0.082 4.082 13 H 0.097 0.903 14 C -0.101 4.101 15 C -0.134 4.134 16 C 0.095 3.905 17 N -0.603 5.603 18 C 0.555 3.445 19 O -0.520 6.520 20 C -0.116 4.116 21 C -0.078 4.078 22 C -0.117 4.117 23 C -0.019 4.019 24 Cl -0.067 7.067 25 C -0.115 4.115 26 C -0.054 4.054 27 C 0.124 3.876 28 H 0.270 0.730 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.515 -23.750 -3.913 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.461 4.461 8 H 0.113 0.887 9 O -0.116 6.116 10 C 0.246 3.754 11 O -0.452 6.452 12 C -0.103 4.103 13 H 0.115 0.885 14 C -0.139 4.139 15 C -0.172 4.172 16 C -0.028 4.028 17 N -0.336 5.336 18 C 0.343 3.657 19 O -0.396 6.396 20 C -0.120 4.120 21 C -0.097 4.097 22 C -0.136 4.136 23 C -0.045 4.045 24 Cl -0.039 7.039 25 C -0.133 4.133 26 C -0.073 4.073 27 C 0.002 3.998 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.130 0.870 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.863 -23.169 -3.911 23.995 hybrid contribution 0.427 0.623 0.023 0.755 sum -4.436 -22.547 -3.888 23.306 Atomic orbital electron populations 1.70006 1.05966 1.27731 1.45967 1.25349 0.95792 0.98871 0.96178 0.85694 0.79030 0.79858 0.78727 1.19875 1.20328 1.19137 1.21212 0.92320 0.79859 1.52662 0.88704 1.83893 1.39326 1.13359 1.75013 1.22850 0.86531 0.86879 0.79116 1.90549 1.15573 1.87949 1.51100 1.21097 0.97476 0.91240 1.00441 0.88462 1.21364 0.96780 0.91703 1.04011 1.21957 0.99165 0.98138 0.97941 1.22139 0.92512 0.89126 0.98989 1.48040 1.05609 1.07785 1.72187 1.18272 0.82042 0.88320 0.77100 1.90873 1.56811 1.42564 1.49320 1.20089 0.97228 0.94349 1.00310 1.21406 0.99235 0.92083 0.96939 1.21001 0.95348 0.96859 1.00367 1.21169 0.96383 0.87121 0.99863 1.98387 1.86691 1.22451 1.96321 1.21048 1.00746 0.92833 0.98721 1.21222 0.93469 0.95230 0.97394 1.21631 0.98591 0.82808 0.96800 0.92013 0.90915 0.90648 0.90207 0.91291 0.90831 0.89075 0.84028 0.84236 0.84191 0.83896 0.87013 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 2 C 0.04 1.21 5.49 -17.53 -0.10 1.12 16 3 Si 0.94 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.38 -11.39 9.65 30.92 0.30 -11.09 16 8 H 0.10 2.82 6.86 -52.49 -0.36 2.46 16 9 O -0.21 -5.99 9.68 -20.71 -0.20 -6.19 16 10 C 0.40 9.70 7.21 36.00 0.26 9.96 16 11 O -0.55 -14.51 15.22 -19.05 -0.29 -14.80 16 12 C -0.08 -1.48 2.78 -91.65 -0.25 -1.73 16 13 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 14 C -0.10 -1.44 4.46 -26.69 -0.12 -1.56 16 15 C -0.13 -1.35 6.08 -26.61 -0.16 -1.51 16 16 C 0.09 0.91 4.92 -3.71 -0.02 0.89 16 17 N -0.60 -8.15 2.97 -173.90 -0.52 -8.67 16 18 C 0.56 8.11 7.31 -12.36 -0.09 8.02 16 19 O -0.52 -9.94 16.36 5.31 0.09 -9.86 16 20 C -0.12 -1.28 5.08 -104.97 -0.53 -1.81 16 21 C -0.08 -0.65 7.39 -39.19 -0.29 -0.94 16 22 C -0.12 -0.86 9.81 -39.61 -0.39 -1.25 16 23 C -0.02 -0.15 6.33 -39.38 -0.25 -0.40 16 24 Cl -0.07 -0.50 28.95 -51.86 -1.50 -2.01 16 25 C -0.11 -0.94 9.81 -39.60 -0.39 -1.33 16 26 C -0.05 -0.54 9.65 -39.19 -0.38 -0.92 16 27 C 0.12 2.10 5.65 -3.71 -0.02 2.08 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 30 H 0.07 1.13 8.07 -51.92 -0.42 0.71 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 34 H 0.09 0.70 4.80 -51.93 -0.25 0.45 16 35 H 0.14 0.96 6.70 -52.49 -0.35 0.60 16 36 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.11 2.28 7.00 -51.93 -0.36 1.91 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -35.13 354.06 -8.46 -43.59 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.68 Total: 1.44 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.43 Total: -0.46 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.24 Total: -33.49 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.40 Total: -30.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.13 -8.46 -43.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009183138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.181 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds