Wall clock time and date at job start Tue Mar 31 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 120.00058 * 2 1 4 4 C 1.50695 * 109.47352 * 270.00234 * 3 2 1 5 5 H 1.08005 * 120.00019 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00308 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99706 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00116 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47170 * 60.00229 * 8 6 4 10 10 H 1.48500 * 109.46764 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46996 * 300.00279 * 8 6 4 12 12 C 1.34772 * 119.99868 * 180.02562 * 2 1 3 13 13 O 1.21614 * 119.99955 * 183.54968 * 12 2 1 14 14 C 1.47410 * 120.00308 * 3.54606 * 12 2 1 15 15 C 1.41087 * 119.43006 * 327.93243 * 14 12 2 16 16 C 1.35252 * 121.79322 * 180.26577 * 15 14 12 17 17 C 1.41265 * 119.81437 * 359.48997 * 16 15 14 18 18 N 1.31214 * 136.26163 * 180.24879 * 17 16 15 19 19 O 1.21016 * 112.57036 * 180.02562 * 18 17 16 20 20 C 1.34248 * 113.58243 * 0.02562 * 19 18 17 21 21 C 1.47338 * 127.13449 * 180.02562 * 20 19 18 22 22 C 1.39823 * 120.17171 * 133.28958 * 21 20 19 23 23 C 1.37888 * 119.82745 * 179.74310 * 22 21 20 24 24 C 1.38398 * 120.17118 * 0.53707 * 23 22 21 25 25 C 1.38413 * 120.33942 * 359.73764 * 24 23 22 26 26 C 1.37880 * 120.16681 * 359.97438 * 25 24 23 27 27 C 1.39687 * 105.72997 * 359.97438 * 20 19 18 28 28 C 1.38645 * 119.43889 * 147.68902 * 14 12 2 29 29 H 1.09003 * 109.47140 * 275.03863 * 1 2 3 30 30 H 1.08995 * 109.47111 * 35.03090 * 1 2 3 31 31 H 1.08997 * 109.47547 * 155.03933 * 1 2 3 32 32 H 1.09006 * 109.47081 * 30.00632 * 3 2 1 33 33 H 1.09001 * 109.46946 * 149.99804 * 3 2 1 34 34 H 0.97006 * 120.00012 * 179.97438 * 7 6 4 35 35 H 1.07995 * 119.10663 * 0.03651 * 15 14 12 36 36 H 1.08000 * 120.08807 * 179.76459 * 16 15 14 37 37 H 1.08005 * 120.08347 * 0.02562 * 22 21 20 38 38 H 1.08003 * 119.91289 * 180.29973 * 23 22 21 39 39 H 1.08001 * 119.83174 * 179.76182 * 24 23 22 40 40 H 1.07996 * 119.91184 * 179.97438 * 25 24 23 41 41 H 1.08006 * 120.08624 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.39577 * 0.02562 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4379 3.4169 -3.4339 9 1 2.1406 3.5937 -4.1346 10 1 4.1803 4.7030 -3.4338 11 1 4.2412 2.3822 -4.1332 12 6 2.1389 -1.1672 -0.0005 13 8 3.3533 -1.1682 0.0647 14 6 1.4040 -2.4425 -0.0800 15 6 0.1225 -2.5417 0.5017 16 6 -0.5915 -3.6897 0.4615 17 6 -0.0581 -4.8262 -0.1860 18 7 -0.4500 -6.0570 -0.4167 19 8 0.3707 -6.6979 -1.0334 20 6 1.4799 -6.0035 -1.3330 21 6 2.6600 -6.4872 -2.0707 22 6 3.2124 -5.7147 -3.0969 23 6 4.3201 -6.1718 -3.7791 24 6 4.8784 -7.3968 -3.4578 25 6 4.3338 -8.1698 -2.4470 26 6 3.2298 -7.7236 -1.7518 27 6 1.2826 -4.7269 -0.8013 28 6 1.9817 -3.5226 -0.7296 29 1 -0.3633 0.0903 1.0237 30 1 -0.3633 0.8415 -0.5899 31 1 -0.3634 -0.9316 -0.4336 32 1 1.6085 2.0284 0.5140 33 1 3.1499 1.1384 0.5139 34 1 4.0302 4.4440 -0.8503 35 1 -0.2984 -1.6785 0.9958 36 1 -1.5686 -3.7359 0.9193 37 1 2.7754 -4.7604 -3.3515 38 1 4.7509 -5.5741 -4.5688 39 1 5.7437 -7.7512 -3.9983 40 1 4.7747 -9.1248 -2.2023 41 1 2.8061 -8.3276 -0.9631 42 1 2.9620 -3.4325 -1.1739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009303151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:14 Heat of formation + Delta-G solvation = 97.102014 kcal Electronic energy + Delta-G solvation = -27499.063084 eV Core-core repulsion = 23606.410267 eV Total energy + Delta-G solvation = -3892.652817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.80454 -39.81185 -39.36059 -37.52868 -35.09131 -33.71242 -33.07199 -32.27610 -31.38891 -31.00321 -29.52743 -28.08439 -26.27274 -25.36160 -23.91703 -23.21193 -22.82315 -22.48789 -20.36784 -19.56150 -18.35059 -18.02114 -17.79627 -16.67180 -16.57348 -16.23211 -15.54042 -15.25430 -15.05762 -14.63921 -14.58494 -14.29697 -13.99655 -13.84152 -13.76477 -13.54854 -13.10161 -12.88424 -12.59860 -12.44112 -12.24790 -12.10149 -11.68725 -11.51923 -11.38116 -11.16193 -10.97097 -10.87780 -10.72175 -10.60334 -10.20785 -9.73371 -9.49659 -9.31678 -9.23487 -9.09006 -8.47232 -7.95508 -7.69364 -6.08393 -4.13752 -0.13924 0.84719 1.05438 1.22924 2.00310 2.62360 3.10221 3.29325 3.33905 3.36102 3.40914 3.51817 3.78554 3.97384 4.14118 4.40116 4.44427 4.57581 4.62323 4.72855 4.78829 4.86975 4.97934 5.07382 5.20080 5.22091 5.26958 5.37005 5.53810 5.59954 5.66813 5.76573 5.80199 5.93388 6.02101 6.07514 6.09985 6.15038 6.15825 6.26969 6.50180 6.55089 6.99309 7.37865 7.44455 7.87261 7.99471 8.17523 8.28506 8.81306 8.96843 9.51366 10.99693 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003217 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.877172 B = 8701.490667 C =10518.007625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.592 5.592 3 C 0.245 3.755 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.547 3.453 13 O -0.534 6.534 14 C -0.122 4.122 15 C -0.070 4.070 16 C -0.101 4.101 17 C 0.054 3.946 18 N -0.373 5.373 19 O 0.144 5.856 20 C 0.042 3.958 21 C -0.027 4.027 22 C -0.082 4.082 23 C -0.116 4.116 24 C -0.102 4.102 25 C -0.121 4.121 26 C -0.088 4.088 27 C -0.163 4.163 28 C 0.000 4.000 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.156 0.844 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 -21.714 -2.347 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.323 5.323 3 C 0.126 3.874 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.333 3.667 13 O -0.412 6.412 14 C -0.126 4.126 15 C -0.092 4.092 16 C -0.120 4.120 17 C -0.093 4.093 18 N -0.074 5.074 19 O 0.075 5.925 20 C -0.028 4.028 21 C -0.028 4.028 22 C -0.100 4.100 23 C -0.134 4.134 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.106 4.106 27 C -0.167 4.167 28 C -0.020 4.020 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.173 0.827 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.031 -22.131 -1.894 22.775 hybrid contribution 0.547 1.003 -1.007 1.523 sum -4.484 -21.128 -2.901 21.792 Atomic orbital electron populations 1.22281 0.81738 1.03166 1.00632 1.48057 1.06172 1.07640 1.70439 1.19354 0.92695 0.77675 0.97686 1.21384 1.36894 1.06452 0.92172 0.92439 1.24930 0.95267 0.96312 0.97495 1.69921 1.38145 1.14348 1.30829 0.86548 0.78398 0.77870 0.84565 1.20210 1.21112 1.20147 1.17956 0.87198 0.83192 0.78340 1.90782 1.13236 1.87015 1.50162 1.20149 0.95436 0.95358 1.01642 1.21558 0.92805 0.97948 0.96872 1.19810 1.01234 0.89266 1.01738 1.21880 0.93534 0.92931 1.00907 1.73981 1.12060 1.06409 1.14948 1.84766 1.19547 1.37497 1.50680 1.22372 0.89747 0.90215 1.00486 1.17538 0.92126 0.96179 0.96990 1.21316 0.95792 0.99380 0.93543 1.21141 0.95705 0.96422 1.00128 1.21403 0.99410 0.94378 0.96846 1.21098 0.96222 1.00307 0.96261 1.21316 0.95876 0.94148 0.99272 1.19915 0.96826 0.94786 1.05145 1.20365 0.98547 0.88192 0.94881 0.92977 0.90696 0.90784 0.94703 0.93492 0.92576 0.82669 0.84358 0.85003 0.84940 0.85458 0.85249 0.85174 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 8.77 59.85 0.53 1.52 16 2 N -0.59 -12.40 2.86 -184.24 -0.53 -12.92 16 3 C 0.24 6.30 5.21 -5.20 -0.03 6.27 16 4 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.55 11.50 7.40 -12.53 -0.09 11.41 16 13 O -0.53 -13.42 16.26 5.27 0.09 -13.33 16 14 C -0.12 -2.02 5.46 -104.93 -0.57 -2.60 16 15 C -0.07 -0.94 7.24 -39.57 -0.29 -1.22 16 16 C -0.10 -1.26 10.06 -39.50 -0.40 -1.66 16 17 C 0.05 0.77 7.59 -83.05 -0.63 0.13 16 18 N -0.37 -5.30 12.06 33.28 0.40 -4.90 16 19 O 0.14 1.86 11.08 16.60 0.18 2.05 16 20 C 0.04 0.52 6.98 -35.34 -0.25 0.27 16 21 C -0.03 -0.29 5.83 -105.01 -0.61 -0.90 16 22 C -0.08 -0.83 9.72 -39.12 -0.38 -1.21 16 23 C -0.12 -0.98 10.03 -39.65 -0.40 -1.38 16 24 C -0.10 -0.75 10.04 -39.46 -0.40 -1.15 16 25 C -0.12 -0.89 10.03 -39.65 -0.40 -1.29 16 26 C -0.09 -0.77 9.80 -39.12 -0.38 -1.15 16 27 C -0.16 -2.32 6.40 -104.98 -0.67 -2.99 16 28 C 0.00 0.01 9.61 -38.98 -0.37 -0.37 16 29 H 0.05 0.66 7.38 -51.93 -0.38 0.27 16 30 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 31 H 0.07 0.98 4.74 -51.93 -0.25 0.73 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.36 7.37 -51.93 -0.38 0.98 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.16 1.76 4.71 -52.49 -0.25 1.51 16 36 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 41 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.14 2.24 7.91 -52.48 -0.42 1.82 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -33.93 364.18 -9.01 -42.94 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.60 Total: -0.55 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -5.76 Total: -9.78 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.61 Total: -43.31 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.27 Total: -11.29 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.93 -9.01 -42.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009303151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.043 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds