Wall clock time and date at job start Tue Mar 31 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99581 * 2 1 4 4 C 1.53000 * 109.46566 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46851 * 180.02562 * 4 3 2 6 6 C 1.34765 * 126.50596 * 264.99759 * 5 4 3 7 7 N 1.30879 * 109.72656 * 180.02562 * 6 5 4 8 8 C 1.33528 * 109.81762 * 359.97438 * 7 6 5 9 9 C 1.38074 * 126.50949 * 85.00064 * 5 4 3 10 10 C 1.41018 * 134.60170 * 0.02562 * 9 5 4 11 11 O 1.21809 * 120.37592 * 359.97231 * 10 9 5 12 12 N 1.34926 * 119.23744 * 180.02562 * 10 9 5 13 13 C 1.37323 * 119.49445 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99712 * 221.65598 * 13 12 10 15 15 C 1.38973 * 120.00204 * 41.37206 * 13 12 10 16 16 N 1.31348 * 119.99348 * 20.50088 * 15 13 12 17 17 Si 1.86791 * 120.00334 * 200.49699 * 15 13 12 18 18 H 1.48504 * 109.47255 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47381 * 120.00356 * 17 15 13 20 20 H 1.48503 * 109.47149 * 240.00366 * 17 15 13 21 21 C 1.34411 * 121.01243 * 0.27047 * 12 10 9 22 22 O 1.21586 * 119.17395 * 179.70576 * 21 12 10 23 23 N 1.34648 * 121.65379 * 359.43789 * 21 12 10 24 24 C 1.46497 * 119.95762 * 180.28541 * 23 21 12 25 25 C 1.53003 * 109.47458 * 270.27061 * 24 23 21 26 26 C 1.52995 * 109.47413 * 174.99957 * 25 24 23 27 27 C 1.53000 * 109.47330 * 295.00296 * 25 24 23 28 28 H 1.08996 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47451 * 300.00472 * 1 2 3 30 30 H 1.09001 * 109.47281 * 60.00264 * 1 2 3 31 31 H 1.09000 * 109.47349 * 60.00231 * 3 2 1 32 32 H 1.08997 * 109.47384 * 299.99383 * 3 2 1 33 33 H 1.09001 * 109.47396 * 60.00047 * 4 3 2 34 34 H 1.09004 * 109.47356 * 299.99827 * 4 3 2 35 35 H 1.08000 * 125.14035 * 0.02562 * 6 5 4 36 36 H 0.97005 * 119.99542 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.47234 * 30.27061 * 24 23 21 38 38 H 1.09002 * 109.47009 * 150.27197 * 24 23 21 39 39 H 1.09003 * 109.46584 * 55.00397 * 25 24 23 40 40 H 1.08997 * 109.47244 * 60.00007 * 26 25 24 41 41 H 1.09005 * 109.47413 * 180.02562 * 26 25 24 42 42 H 1.09005 * 109.47341 * 300.00433 * 26 25 24 43 43 H 1.08999 * 109.47034 * 300.00291 * 27 25 24 44 44 H 1.09009 * 109.46977 * 59.99481 * 27 25 24 45 45 H 1.08989 * 109.47265 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5230 0.0013 6 6 4.5441 3.2173 -1.0775 7 7 5.0239 4.3751 -0.7005 8 6 4.9457 4.4868 0.6278 9 6 4.3765 3.3125 1.1071 10 6 4.1767 3.1623 2.4950 11 8 3.6800 2.1426 2.9390 12 7 4.5411 4.1615 3.3252 13 6 4.3495 4.0206 4.6777 14 1 3.9801 4.8517 5.2602 15 6 4.6253 2.8069 5.2959 16 7 5.4241 1.9409 4.7153 17 14 3.8601 2.4073 6.9524 18 1 3.0048 3.5401 7.3889 19 1 3.0323 1.1803 6.8322 20 1 4.9345 2.1835 7.9528 21 6 5.0843 5.2948 2.8484 22 8 5.3954 6.1759 3.6262 23 7 5.2974 5.4765 1.5314 24 6 5.8977 6.7242 1.0528 25 6 4.7935 7.7422 0.7602 26 6 5.4239 9.0834 0.3803 27 6 3.9293 7.2386 -0.3976 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 4.4875 2.8707 -2.0988 36 1 5.6163 1.0935 5.1466 37 1 6.5658 7.1224 1.8165 38 1 6.4629 6.5293 0.1414 39 1 4.1734 7.8705 1.6474 40 1 6.0441 8.9551 -0.5068 41 1 4.6373 9.8088 0.1723 42 1 6.0396 9.4422 1.2051 43 1 4.5495 7.1102 -1.2847 44 1 3.4802 6.2830 -0.1268 45 1 3.1425 7.9635 -0.6057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010579156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:12 Heat of formation + Delta-G solvation = -16.154570 kcal Electronic energy + Delta-G solvation = -31115.274710 eV Core-core repulsion = 26942.694550 eV Total energy + Delta-G solvation = -4172.580160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.30240 -40.09207 -38.10271 -37.86077 -36.19036 -34.79129 -33.76709 -33.46806 -31.87882 -29.79645 -28.80853 -26.94996 -26.33677 -26.21903 -25.26528 -23.48450 -22.83799 -22.16660 -20.68407 -19.73485 -18.73393 -18.34939 -17.07516 -16.69185 -16.22054 -16.00135 -15.77855 -15.36567 -15.12693 -15.00909 -14.52059 -14.25383 -14.09950 -13.88189 -13.80469 -13.64963 -13.34837 -12.93512 -12.63466 -12.56362 -12.24904 -12.03000 -11.69618 -11.59418 -11.58633 -11.43416 -11.16608 -11.02869 -10.81000 -10.77715 -10.45392 -10.35081 -10.09280 -10.02151 -9.78247 -9.51431 -9.19546 -9.10797 -8.75198 -7.90288 -7.33284 -6.44315 -4.22417 1.68114 2.47467 3.01069 3.05238 3.24571 3.31369 3.34598 3.36374 3.82316 4.12279 4.51737 4.58228 4.68942 4.74420 4.91767 5.01337 5.08127 5.13586 5.15803 5.23472 5.25190 5.30628 5.35151 5.45865 5.54913 5.64790 5.74281 5.77899 5.79156 5.87928 6.04374 6.06128 6.15411 6.24945 6.27610 6.37404 6.53115 6.63921 6.82302 6.96849 7.27579 7.41252 7.49008 7.94564 8.08174 8.33065 8.75194 9.01189 9.27468 9.72322 10.66368 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.007685 B = 0.006549 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3642.617506 B = 4274.735350 C = 7157.630502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.387 6.387 3 C 0.053 3.947 4 C 0.113 3.887 5 N -0.415 5.415 6 C 0.226 3.774 7 N -0.499 5.499 8 C 0.290 3.710 9 C -0.118 4.118 10 C 0.552 3.448 11 O -0.501 6.501 12 N -0.375 5.375 13 C -0.347 4.347 14 H 0.105 0.895 15 C 0.076 3.924 16 N -0.822 5.822 17 Si 0.930 3.070 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.280 1.280 21 C 0.671 3.329 22 O -0.557 6.557 23 N -0.514 5.514 24 C 0.131 3.869 25 C -0.113 4.113 26 C -0.140 4.140 27 C -0.137 4.137 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.216 0.784 36 H 0.272 0.728 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 1.467 -14.288 15.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.305 6.305 3 C -0.025 4.025 4 C -0.009 4.009 5 N -0.100 5.100 6 C -0.056 4.056 7 N -0.224 5.224 8 C 0.061 3.939 9 C -0.235 4.235 10 C 0.345 3.655 11 O -0.376 6.376 12 N -0.105 5.105 13 C -0.472 4.472 14 H 0.123 0.877 15 C -0.137 4.137 16 N -0.454 5.454 17 Si 0.755 3.245 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.206 1.206 21 C 0.376 3.624 22 O -0.432 6.432 23 N -0.242 5.242 24 C 0.008 3.992 25 C -0.132 4.132 26 C -0.198 4.198 27 C -0.194 4.194 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.411 1.509 -13.993 14.749 hybrid contribution -0.715 -0.755 0.964 1.418 sum -5.126 0.754 -13.029 14.022 Atomic orbital electron populations 1.22746 0.80441 1.02801 1.00203 1.87786 1.20160 1.26991 1.95534 1.22718 0.92989 0.85342 1.01439 1.21615 0.92215 0.80661 1.06437 1.44435 1.45512 1.14560 1.05497 1.24935 0.99427 0.87776 0.93458 1.69525 1.24899 1.18741 1.09219 1.17992 0.98861 0.88319 0.88725 1.19596 1.17914 0.94791 0.91236 1.15385 0.81619 0.85770 0.82690 1.90698 1.42475 1.26644 1.77826 1.41497 1.48067 1.12409 1.08546 1.19350 1.47558 1.00498 0.79832 0.87718 1.25330 0.93366 0.95704 0.99319 1.69892 1.27906 1.08250 1.39310 0.85858 0.79135 0.78922 0.80558 1.18893 1.20218 1.20614 1.16368 0.80102 0.85867 0.80023 1.90826 1.56299 1.42681 1.53424 1.44220 1.60479 1.15841 1.03669 1.21612 0.95233 0.82009 1.00345 1.21487 0.97468 0.94833 0.99431 1.21724 1.00611 0.96075 1.01342 1.21775 0.99157 1.00509 0.97962 0.89431 0.93671 0.94141 0.91718 0.93022 0.88027 0.86795 0.76781 0.91794 0.89121 0.89610 0.90768 0.92626 0.92672 0.92468 0.92106 0.92853 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.28 10.70 -35.23 -0.38 -5.66 16 3 C 0.05 0.72 6.26 37.16 0.23 0.96 16 4 C 0.11 1.60 6.24 -4.04 -0.03 1.58 16 5 N -0.41 -6.75 2.78 -115.74 -0.32 -7.07 16 6 C 0.23 3.04 12.49 -90.31 -1.13 1.91 16 7 N -0.50 -8.18 10.30 -13.35 -0.14 -8.32 16 8 C 0.29 5.76 5.87 -154.53 -0.91 4.86 16 9 C -0.12 -2.52 6.90 -83.71 -0.58 -3.09 16 10 C 0.55 14.36 6.72 -15.14 -0.10 14.26 16 11 O -0.50 -13.97 13.69 5.09 0.07 -13.90 16 12 N -0.37 -10.28 2.63 -68.79 -0.18 -10.46 16 13 C -0.35 -9.98 8.55 -14.82 -0.13 -10.11 16 14 H 0.11 3.00 7.79 -52.49 -0.41 2.59 16 15 C 0.08 2.12 4.29 -17.49 -0.07 2.04 16 16 N -0.82 -23.93 11.62 55.50 0.64 -23.28 16 17 Si 0.93 21.63 29.60 -169.99 -5.03 16.60 16 18 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.67 17.02 8.07 -87.36 -0.71 16.31 16 22 O -0.56 -14.99 15.62 5.29 0.08 -14.91 16 23 N -0.51 -10.79 2.53 -120.85 -0.31 -11.10 16 24 C 0.13 2.22 4.86 -4.04 -0.02 2.20 16 25 C -0.11 -1.68 3.13 -90.62 -0.28 -1.96 16 26 C -0.14 -1.63 9.19 37.15 0.34 -1.29 16 27 C -0.14 -1.93 8.34 37.16 0.31 -1.62 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 1.03 8.13 -51.93 -0.42 0.61 16 34 H 0.11 1.99 7.50 -51.93 -0.39 1.60 16 35 H 0.22 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.09 1.59 7.39 -51.93 -0.38 1.21 16 38 H 0.09 1.32 8.01 -51.93 -0.42 0.90 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.88 6.10 -51.92 -0.32 0.56 16 45 H 0.04 0.57 8.14 -51.94 -0.42 0.14 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -35.19 373.55 -8.43 -43.62 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.54 Total: 1.33 kcal Atomic # 6 Polarization: 29.47 SS G_CDS: -1.95 Total: 27.51 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.30 Total: -60.23 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.22 Total: -34.46 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.19 -8.43 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010579156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.464 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds