Wall clock time and date at job start Tue Mar 31 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86804 * 119.99990 * 2 1 4 4 H 1.48496 * 109.47394 * 240.00254 * 3 2 1 5 5 H 1.48510 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47495 * 119.99434 * 3 2 1 7 7 C 1.38752 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00086 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99641 * 0.02562 * 7 2 1 10 10 C 1.34316 * 116.99538 * 179.97438 * 9 7 2 11 11 O 1.21207 * 120.00179 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99954 * 179.97438 * 10 9 7 13 13 C 1.50701 * 109.47194 * 180.02562 * 12 10 9 14 14 C 1.33633 * 122.74807 * 125.00437 * 13 12 10 15 15 S 1.76196 * 107.92399 * 180.02562 * 14 13 12 16 16 C 1.70971 * 90.28315 * 359.97438 * 15 14 13 17 17 C 1.50699 * 124.91661 * 179.97438 * 16 15 14 18 18 O 1.42905 * 109.46972 * 270.02391 * 17 16 15 19 19 C 1.35950 * 116.99802 * 179.97438 * 18 17 16 20 20 C 1.38708 * 120.03026 * 359.72477 * 19 18 17 21 21 C 1.38148 * 119.96893 * 179.78884 * 20 19 18 22 22 C 1.38453 * 120.02995 * 0.48957 * 21 20 19 23 23 F 1.35097 * 119.97318 * 179.72219 * 22 21 20 24 24 C 1.38459 * 120.05793 * 359.74257 * 22 21 20 25 25 C 1.38144 * 120.03434 * 0.02562 * 24 22 21 26 26 N 1.29024 * 110.16687 * 0.24373 * 16 15 14 27 27 H 0.97001 * 120.00009 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46903 * 60.00147 * 12 10 9 29 29 H 1.09002 * 109.47057 * 300.00435 * 12 10 9 30 30 H 1.08004 * 126.03751 * 359.95916 * 14 13 12 31 31 H 1.09004 * 109.47103 * 150.02578 * 17 16 15 32 32 H 1.09000 * 109.47247 * 30.02456 * 17 16 15 33 33 H 1.08003 * 120.01532 * 0.02562 * 20 19 18 34 34 H 1.08004 * 119.98636 * 180.21131 * 21 20 19 35 35 H 1.08006 * 119.98069 * 180.02562 * 24 22 21 36 36 H 1.08001 * 120.02084 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1021 1.6965 -1.2125 5 1 1.2833 2.7466 -0.0006 6 1 3.1021 1.6966 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0010 9 8 1.3336 -2.3700 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2756 -3.4330 0.0001 12 6 1.3811 -4.8392 0.0011 13 6 2.4191 -5.9318 0.0016 14 6 2.4495 -6.8995 0.9227 15 16 3.8106 -7.9561 0.5544 16 6 4.2029 -6.9919 -0.8019 17 6 5.3544 -7.2496 -1.7394 18 8 6.5178 -6.5701 -1.2629 19 6 7.6534 -6.7004 -1.9988 20 6 7.6486 -7.4711 -3.1521 21 6 8.8022 -7.5990 -3.9014 22 6 9.9653 -6.9668 -3.4961 23 9 11.0942 -7.0973 -4.2267 24 6 9.9727 -6.2011 -2.3425 25 6 8.8194 -6.0675 -1.5939 26 7 3.3738 -6.0085 -0.9034 27 1 -0.4850 0.8401 -0.0004 28 1 0.7580 -4.9299 -0.8887 29 1 0.7586 -4.9295 0.8913 30 1 1.7619 -7.0133 1.7478 31 1 5.1017 -6.8834 -2.7345 32 1 5.5525 -8.3204 -1.7858 33 1 6.7425 -7.9677 -3.4662 34 1 8.7979 -8.1963 -4.8012 35 1 10.8806 -5.7081 -2.0278 36 1 8.8255 -5.4705 -0.6939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010751608.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:19 Heat of formation + Delta-G solvation = -81.155117 kcal Electronic energy + Delta-G solvation = -24684.795312 eV Core-core repulsion = 20562.844575 eV Total energy + Delta-G solvation = -4121.950737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.05148 -40.50026 -39.92649 -38.61702 -37.49234 -35.08554 -32.66068 -32.07071 -31.54794 -30.01969 -28.78092 -27.67761 -25.24078 -23.91527 -22.90924 -22.21011 -20.49005 -19.64390 -18.69980 -17.82365 -17.64820 -17.57198 -16.87875 -16.40542 -16.09159 -15.65834 -15.45445 -15.11124 -14.79005 -14.49123 -14.44795 -14.22277 -13.92723 -13.77231 -13.40577 -13.25354 -13.15518 -12.57448 -12.43770 -12.18509 -12.07053 -11.61070 -11.36142 -11.17350 -11.16461 -11.04809 -10.42760 -10.27642 -9.76162 -9.58285 -9.49876 -9.41457 -8.99623 -8.72509 -8.51777 -8.37699 -6.35609 -4.02939 0.56598 0.84871 0.93384 1.30226 1.65558 2.54547 3.17622 3.20244 3.23162 3.27306 3.28283 3.61049 3.92283 4.02081 4.05503 4.34516 4.46051 4.56763 4.67340 4.80366 4.91062 4.97687 5.04830 5.15153 5.18405 5.28865 5.39818 5.56636 5.73026 5.79709 5.87095 5.91786 5.94105 6.10401 6.39222 6.83701 7.04616 7.45119 7.82532 8.01881 8.79869 9.13660 9.92141 10.82702 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.002744 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.294676 B =10201.807738 C =12494.420847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.378 4.378 8 H 0.094 0.906 9 O -0.218 6.218 10 C 0.402 3.598 11 O -0.536 6.536 12 C -0.035 4.035 13 C 0.096 3.904 14 C -0.243 4.243 15 S 0.129 5.871 16 C 0.028 3.972 17 C 0.144 3.856 18 O -0.298 6.298 19 C 0.129 3.871 20 C -0.184 4.184 21 C -0.111 4.111 22 C 0.054 3.946 23 F -0.143 7.143 24 C -0.111 4.111 25 C -0.120 4.120 26 N -0.410 5.410 27 H 0.269 0.731 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.183 0.817 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.688 -19.973 -3.148 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.455 4.455 8 H 0.111 0.889 9 O -0.126 6.126 10 C 0.247 3.753 11 O -0.432 6.432 12 C -0.075 4.075 13 C -0.036 4.036 14 C -0.382 4.382 15 S 0.383 5.617 16 C -0.250 4.250 17 C 0.066 3.934 18 O -0.211 6.211 19 C 0.083 3.917 20 C -0.202 4.202 21 C -0.130 4.130 22 C 0.035 3.965 23 F -0.122 7.122 24 C -0.130 4.130 25 C -0.139 4.139 26 N -0.125 5.125 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.200 0.800 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.337 -20.227 -2.982 23.879 hybrid contribution -0.156 1.412 -0.239 1.440 sum 12.181 -18.815 -3.221 22.644 Atomic orbital electron populations 1.69980 1.05932 1.27632 1.47108 1.25296 0.95799 0.98737 0.96382 0.85765 0.78624 0.79577 0.79327 1.19524 1.20416 1.19552 1.21140 0.92294 0.79830 1.52226 0.88870 1.83863 1.39238 1.13249 1.76228 1.22731 0.86794 0.86763 0.79060 1.90606 1.15388 1.87786 1.49382 1.19675 0.94750 0.87342 1.05735 1.19742 0.95825 0.96610 0.91437 1.26916 1.04440 1.00668 1.06203 1.83677 1.23713 1.29983 1.24355 1.26176 1.01263 0.96805 1.00794 1.20977 0.80151 0.96565 0.95753 1.86224 1.16445 1.69318 1.49076 1.19031 0.86656 0.95138 0.90860 1.21140 0.99627 1.03306 0.96168 1.20913 0.91271 1.00138 1.00694 1.17577 0.83112 1.02745 0.93050 1.91486 1.49362 1.94800 1.76526 1.20972 0.99238 0.98955 0.93827 1.20358 0.89667 1.01822 1.02016 1.65934 1.02564 1.17365 1.26673 0.92141 0.87109 0.87176 0.79991 0.88668 0.89661 0.84314 0.84422 0.83974 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.79 13.67 55.48 0.76 -25.03 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.09 16 3 Si 0.94 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.38 -11.45 9.64 30.92 0.30 -11.16 16 8 H 0.09 2.86 6.86 -52.48 -0.36 2.50 16 9 O -0.22 -6.32 9.75 -20.71 -0.20 -6.53 16 10 C 0.40 10.11 7.87 36.01 0.28 10.40 16 11 O -0.54 -15.01 14.67 -19.05 -0.28 -15.29 16 12 C -0.03 -0.62 6.31 -29.03 -0.18 -0.81 16 13 C 0.10 1.63 5.64 -84.23 -0.48 1.16 16 14 C -0.24 -3.21 11.07 29.12 0.32 -2.88 16 15 S 0.13 1.48 23.18 -107.50 -2.49 -1.01 16 16 C 0.03 0.40 7.02 -13.46 -0.09 0.31 16 17 C 0.14 1.64 5.32 36.01 0.19 1.83 16 18 O -0.30 -4.05 10.12 -19.58 -0.20 -4.24 16 19 C 0.13 1.49 6.69 -39.23 -0.26 1.22 16 20 C -0.18 -1.70 9.04 -39.44 -0.36 -2.06 16 21 C -0.11 -1.00 10.02 -39.54 -0.40 -1.39 16 22 C 0.05 0.55 7.30 -39.42 -0.29 0.26 16 23 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 24 C -0.11 -1.06 10.02 -39.53 -0.40 -1.46 16 25 C -0.12 -1.29 9.98 -39.44 -0.39 -1.68 16 26 N -0.41 -7.45 9.67 -8.06 -0.08 -7.53 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.11 1.80 8.14 -51.92 -0.42 1.38 16 29 H 0.11 1.63 8.03 -51.93 -0.42 1.21 16 30 H 0.18 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.10 1.02 7.67 -51.93 -0.40 0.62 16 32 H 0.09 0.64 7.65 -51.93 -0.40 0.24 16 33 H 0.14 0.96 6.30 -52.48 -0.33 0.63 16 34 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 36 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -37.14 345.78 -7.26 -44.40 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -3.15 Total: -0.14 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.85 Total: -5.17 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.68 Total: -32.56 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.68 Total: -26.06 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.49 Total: -1.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.14 -7.26 -44.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010751608.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.751 kcal (2) G-P(sol) polarization free energy of solvation -37.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds