Wall clock time and date at job start Tue Mar 31 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86804 * 119.99990 * 2 1 4 4 H 1.48496 * 109.47394 * 240.00254 * 3 2 1 5 5 H 1.48510 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47495 * 119.99434 * 3 2 1 7 7 C 1.38752 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00086 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99641 * 0.02562 * 7 2 1 10 10 C 1.34316 * 116.99538 * 179.97438 * 9 7 2 11 11 O 1.21207 * 120.00179 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99954 * 179.97438 * 10 9 7 13 13 C 1.50701 * 109.47194 * 180.02562 * 12 10 9 14 14 C 1.33633 * 122.74807 * 125.00437 * 13 12 10 15 15 S 1.76196 * 107.92399 * 180.02562 * 14 13 12 16 16 C 1.70971 * 90.28315 * 359.97438 * 15 14 13 17 17 C 1.50699 * 124.91661 * 179.97438 * 16 15 14 18 18 O 1.42905 * 109.46972 * 270.02391 * 17 16 15 19 19 C 1.35950 * 116.99802 * 179.97438 * 18 17 16 20 20 C 1.38708 * 120.03026 * 359.72477 * 19 18 17 21 21 C 1.38148 * 119.96893 * 179.78884 * 20 19 18 22 22 C 1.38453 * 120.02995 * 0.48957 * 21 20 19 23 23 F 1.35097 * 119.97318 * 179.72219 * 22 21 20 24 24 C 1.38459 * 120.05793 * 359.74257 * 22 21 20 25 25 C 1.38144 * 120.03434 * 0.02562 * 24 22 21 26 26 N 1.29024 * 110.16687 * 0.24373 * 16 15 14 27 27 H 0.97001 * 120.00009 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46903 * 60.00147 * 12 10 9 29 29 H 1.09002 * 109.47057 * 300.00435 * 12 10 9 30 30 H 1.08004 * 126.03751 * 359.95916 * 14 13 12 31 31 H 1.09004 * 109.47103 * 150.02578 * 17 16 15 32 32 H 1.09000 * 109.47247 * 30.02456 * 17 16 15 33 33 H 1.08003 * 120.01532 * 0.02562 * 20 19 18 34 34 H 1.08004 * 119.98636 * 180.21131 * 21 20 19 35 35 H 1.08006 * 119.98069 * 180.02562 * 24 22 21 36 36 H 1.08001 * 120.02084 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1021 1.6965 -1.2125 5 1 1.2833 2.7466 -0.0006 6 1 3.1021 1.6966 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0010 9 8 1.3336 -2.3700 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2756 -3.4330 0.0001 12 6 1.3811 -4.8392 0.0011 13 6 2.4191 -5.9318 0.0016 14 6 2.4495 -6.8995 0.9227 15 16 3.8106 -7.9561 0.5544 16 6 4.2029 -6.9919 -0.8019 17 6 5.3544 -7.2496 -1.7394 18 8 6.5178 -6.5701 -1.2629 19 6 7.6534 -6.7004 -1.9988 20 6 7.6486 -7.4711 -3.1521 21 6 8.8022 -7.5990 -3.9014 22 6 9.9653 -6.9668 -3.4961 23 9 11.0942 -7.0973 -4.2267 24 6 9.9727 -6.2011 -2.3425 25 6 8.8194 -6.0675 -1.5939 26 7 3.3738 -6.0085 -0.9034 27 1 -0.4850 0.8401 -0.0004 28 1 0.7580 -4.9299 -0.8887 29 1 0.7586 -4.9295 0.8913 30 1 1.7619 -7.0133 1.7478 31 1 5.1017 -6.8834 -2.7345 32 1 5.5525 -8.3204 -1.7858 33 1 6.7425 -7.9677 -3.4662 34 1 8.7979 -8.1963 -4.8012 35 1 10.8806 -5.7081 -2.0278 36 1 8.8255 -5.4705 -0.6939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010751608.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:19 Heat of formation + Delta-G solvation = -105.223956 kcal Electronic energy + Delta-G solvation = -24685.839015 eV Core-core repulsion = 20562.844575 eV Total energy + Delta-G solvation = -4122.994440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.84814 -41.52621 -41.12825 -40.38860 -38.32944 -37.16709 -34.30948 -33.80708 -32.31517 -31.01616 -29.90223 -28.71376 -27.33661 -24.87383 -23.81926 -23.16170 -22.13441 -20.79180 -19.84332 -19.49772 -19.02111 -18.42954 -18.32125 -17.70905 -16.94056 -16.84165 -16.50400 -16.46207 -16.31997 -16.11054 -15.85082 -15.36542 -15.03039 -14.66449 -14.53621 -14.14419 -14.11028 -13.93051 -13.70325 -13.59506 -13.32544 -13.21331 -12.95345 -12.50024 -12.28502 -12.16981 -12.01102 -11.97509 -11.90409 -11.02880 -10.69148 -10.65039 -10.41848 -10.23033 -9.82708 -9.18842 -8.53383 -6.32652 -0.45567 0.11643 0.14563 0.33840 0.61371 1.31496 1.32751 1.44111 1.50397 1.68883 2.13075 2.29230 2.51706 2.91933 2.96538 2.99501 3.28809 3.54956 3.72870 3.77331 3.92015 4.09182 4.12160 4.19032 4.29171 4.31898 4.48161 4.55038 4.63698 4.76760 4.86106 5.02817 5.06733 5.09982 5.16603 5.20418 5.64724 5.84718 6.24043 6.71904 6.76961 6.92070 7.79718 8.67259 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.002744 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.294676 B =10201.807738 C =12494.420847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.003 4.003 3 Si 1.014 2.986 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.262 1.262 7 C -0.419 4.419 8 H 0.075 0.925 9 O -0.247 6.247 10 C 0.399 3.601 11 O -0.570 6.570 12 C -0.023 4.023 13 C 0.055 3.945 14 C -0.234 4.234 15 S 0.213 5.787 16 C 0.003 3.997 17 C 0.139 3.861 18 O -0.327 6.327 19 C 0.109 3.891 20 C -0.179 4.179 21 C -0.108 4.108 22 C 0.042 3.958 23 F -0.147 7.147 24 C -0.111 4.111 25 C -0.137 4.137 26 N -0.467 5.467 27 H 0.279 0.721 28 H 0.124 0.876 29 H 0.144 0.856 30 H 0.216 0.784 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.006 -21.498 -2.922 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.203 4.203 3 Si 0.833 3.167 4 H -0.190 1.190 5 H -0.180 1.180 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.092 0.908 9 O -0.156 6.156 10 C 0.245 3.755 11 O -0.466 6.466 12 C -0.063 4.063 13 C -0.077 4.077 14 C -0.374 4.374 15 S 0.468 5.532 16 C -0.274 4.274 17 C 0.061 3.939 18 O -0.241 6.241 19 C 0.064 3.936 20 C -0.197 4.197 21 C -0.126 4.126 22 C 0.022 3.978 23 F -0.126 7.126 24 C -0.129 4.129 25 C -0.155 4.155 26 N -0.183 5.183 27 H 0.088 0.912 28 H 0.142 0.858 29 H 0.162 0.838 30 H 0.233 0.767 31 H 0.113 0.887 32 H 0.144 0.856 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.655 -21.790 -2.760 25.349 hybrid contribution -0.195 1.702 -0.286 1.737 sum 12.460 -20.088 -3.046 23.834 Atomic orbital electron populations 1.70055 1.07453 1.29343 1.47184 1.26457 0.96900 1.02105 0.94844 0.84750 0.77677 0.74695 0.79618 1.19006 1.18022 1.18695 1.21272 0.91876 0.81382 1.54948 0.90765 1.83888 1.40150 1.14073 1.77458 1.24186 0.86819 0.88067 0.76396 1.90566 1.17217 1.88454 1.50347 1.19770 0.95267 0.83339 1.07945 1.19655 0.96732 0.97891 0.93452 1.27375 1.05003 0.99584 1.05409 1.83332 1.21168 1.27279 1.21419 1.26664 1.01413 0.96825 1.02494 1.21254 0.78954 0.98645 0.95043 1.86159 1.17389 1.70382 1.50175 1.19282 0.86225 0.96301 0.91842 1.21386 1.00683 1.02550 0.95125 1.21212 0.90554 0.99638 1.01233 1.17802 0.83433 1.03260 0.93277 1.91475 1.49669 1.94872 1.76615 1.21135 0.99479 0.98745 0.93570 1.20483 0.90204 1.02400 1.02462 1.65889 1.04106 1.19735 1.28578 0.91199 0.85824 0.83775 0.76682 0.88731 0.85596 0.81880 0.81943 0.82321 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.22 13.67 21.62 0.30 -53.92 16 2 C 0.00 -0.18 5.49 84.87 0.47 0.29 16 3 Si 1.01 44.92 29.55 68.60 2.03 46.95 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.42 -26.35 9.64 67.94 0.66 -25.70 16 8 H 0.07 4.81 6.86 -2.91 -0.02 4.79 16 9 O -0.25 -14.89 9.75 14.83 0.14 -14.75 16 10 C 0.40 20.77 7.87 71.24 0.56 21.33 16 11 O -0.57 -33.30 14.67 20.78 0.30 -32.99 16 12 C -0.02 -0.84 6.31 29.10 0.18 -0.66 16 13 C 0.05 1.83 5.64 41.52 0.23 2.07 16 14 C -0.23 -5.61 11.07 66.77 0.74 -4.87 16 15 S 0.21 4.33 23.18 -56.49 -1.31 3.02 16 16 C 0.00 0.09 7.02 88.52 0.62 0.71 16 17 C 0.14 3.02 5.32 71.24 0.38 3.40 16 18 O -0.33 -8.89 10.12 -92.99 -0.94 -9.83 16 19 C 0.11 2.48 6.69 22.49 0.15 2.63 16 20 C -0.18 -3.04 9.04 22.36 0.20 -2.84 16 21 C -0.11 -1.73 10.02 22.30 0.22 -1.51 16 22 C 0.04 0.79 7.30 22.37 0.16 0.95 16 23 F -0.15 -2.98 17.27 44.97 0.78 -2.20 16 24 C -0.11 -2.07 10.02 22.30 0.22 -1.85 16 25 C -0.14 -2.98 9.98 22.36 0.22 -2.76 16 26 N -0.47 -17.08 9.67 -179.41 -1.73 -18.81 16 27 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.12 4.04 8.14 -2.38 -0.02 4.02 16 29 H 0.14 4.07 8.03 -2.39 -0.02 4.05 16 30 H 0.22 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.09 1.99 7.67 -2.38 -0.02 1.97 16 32 H 0.13 1.57 7.65 -2.39 -0.02 1.55 16 33 H 0.16 1.85 6.30 -2.91 -0.02 1.83 16 34 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -85.04 345.78 5.73 -79.31 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.14 Total: 12.05 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 5.02 Total: -8.81 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.44 Total: -72.74 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -0.49 Total: -57.57 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.31 Total: 3.02 kcal Total: -85.04 5.73 -79.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010751608.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.912 kcal (2) G-P(sol) polarization free energy of solvation -85.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds