Wall clock time and date at job start Tue Mar 31 2020 04:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47175 * 2 1 4 4 C 1.52998 * 109.46797 * 299.99601 * 3 2 1 5 5 C 1.52994 * 109.47535 * 299.99756 * 4 3 2 6 6 C 1.53002 * 109.47304 * 59.99693 * 3 2 1 7 7 C 1.50693 * 109.47013 * 60.00024 * 6 3 2 8 8 O 1.21288 * 120.00547 * 0.02562 * 7 6 3 9 9 N 1.34783 * 120.00115 * 180.02562 * 7 6 3 10 10 C 1.39981 * 120.00350 * 175.49199 * 9 7 6 11 11 C 1.38922 * 120.00283 * 215.12488 * 10 9 7 12 12 C 1.38008 * 120.00014 * 180.02562 * 11 10 9 13 13 C 1.38910 * 119.99976 * 0.02562 * 12 11 10 14 14 O 1.35774 * 119.99471 * 179.97438 * 13 12 11 15 15 C 1.34808 * 117.00313 * 5.34797 * 14 13 12 16 16 H 1.08002 * 120.00230 * 354.95457 * 15 14 13 17 17 C 1.38633 * 120.00210 * 174.96513 * 15 14 13 18 18 N 1.31575 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47062 * 89.99532 * 19 17 15 21 21 H 1.48503 * 109.47117 * 209.99706 * 19 17 15 22 22 H 1.48505 * 109.47084 * 329.99459 * 19 17 15 23 23 C 1.38907 * 120.00174 * 0.25692 * 13 12 11 24 24 C 1.37999 * 120.00277 * 359.44446 * 23 13 12 25 25 C 1.50696 * 109.47245 * 179.97438 * 3 2 1 26 26 O 1.20826 * 119.99877 * 0.02562 * 25 3 2 27 27 O 1.34231 * 120.00316 * 179.97438 * 25 3 2 28 28 H 1.08994 * 109.47377 * 300.00465 * 1 2 3 29 29 H 1.09005 * 109.46607 * 60.00710 * 1 2 3 30 30 H 1.09004 * 109.47367 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47377 * 239.99535 * 2 1 3 32 32 H 1.09001 * 109.47065 * 119.99872 * 2 1 3 33 33 H 1.09000 * 109.47252 * 60.00328 * 4 3 2 34 34 H 1.09011 * 109.47199 * 179.97438 * 4 3 2 35 35 H 1.08996 * 109.47638 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.47317 * 300.00532 * 5 4 3 37 37 H 1.09009 * 109.47186 * 60.00165 * 5 4 3 38 38 H 1.09008 * 109.46923 * 300.00183 * 6 3 2 39 39 H 1.08997 * 109.46957 * 180.02562 * 6 3 2 40 40 H 0.97001 * 119.99577 * 355.49141 * 9 7 6 41 41 H 1.07997 * 119.99847 * 359.97438 * 11 10 9 42 42 H 1.07994 * 119.99782 * 179.97438 * 12 11 10 43 43 H 0.97000 * 119.99968 * 180.02562 * 18 17 15 44 44 H 1.08008 * 119.99608 * 179.70477 * 23 13 12 45 45 H 1.07999 * 119.99955 * 180.28029 * 24 23 13 46 46 H 0.96698 * 117.00581 * 180.02562 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1636 -1.2493 5 6 2.0401 1.4424 -2.4985 6 6 1.5300 2.1638 1.2492 7 6 2.0322 1.4534 2.4796 8 8 2.7299 0.4675 2.3685 9 7 1.7062 1.9136 3.7038 10 6 2.0929 1.2016 4.8452 11 6 1.2612 1.1669 5.9574 12 6 1.6428 0.4653 7.0829 13 6 2.8589 -0.2058 7.1038 14 8 3.2345 -0.8956 8.2113 15 6 2.3360 -0.9819 9.2126 16 1 1.4004 -0.4465 9.1464 17 6 2.6130 -1.7578 10.3276 18 7 3.7527 -2.4104 10.4083 19 14 1.3684 -1.8768 11.7154 20 1 0.4491 -3.0147 11.4596 21 1 2.0795 -2.0942 13.0009 22 1 0.5870 -0.6161 11.7891 23 6 3.6932 -0.1663 5.9939 24 6 3.3089 0.5301 4.8662 25 6 3.5470 1.4425 0.0006 26 8 4.1511 0.3961 0.0006 27 8 4.2182 2.6049 0.0002 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.4400 2.1636 -1.2493 34 1 1.8930 3.1915 -1.2491 35 1 1.6772 1.9564 -3.3885 36 1 3.1301 1.4424 -2.4984 37 1 1.6768 0.4147 -2.4985 38 1 0.4399 2.1638 1.2491 39 1 1.8929 3.1915 1.2489 40 1 1.2035 2.7383 3.7938 41 1 0.3163 1.6897 5.9415 42 1 0.9964 0.4388 7.9476 43 1 3.9464 -2.9535 11.1882 44 1 4.6408 -0.6842 6.0121 45 1 3.9556 0.5570 4.0017 46 1 5.1838 2.5544 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011259927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:26 Heat of formation + Delta-G solvation = -133.242305 kcal Electronic energy + Delta-G solvation = -29249.594468 eV Core-core repulsion = 25105.070163 eV Total energy + Delta-G solvation = -4144.524305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.28477 -39.83576 -38.70293 -37.36349 -36.30124 -36.01501 -34.00775 -32.20949 -31.61586 -30.64252 -30.21624 -28.05223 -26.12225 -25.22255 -23.92776 -23.00436 -22.30227 -21.56339 -20.19554 -19.16237 -18.08561 -17.87533 -17.41914 -17.12165 -16.58839 -16.43000 -15.77082 -15.71666 -15.11168 -14.57051 -14.50936 -14.18531 -13.90894 -13.73390 -13.57210 -13.47128 -13.10947 -12.92492 -12.80613 -12.59841 -12.37570 -12.20840 -11.96164 -11.79356 -11.72306 -11.58115 -11.56186 -11.49969 -11.36089 -11.04856 -10.82319 -10.72252 -10.64340 -10.45182 -10.31555 -9.72924 -9.48949 -9.18919 -8.70382 -8.20782 -6.94251 -6.44438 -4.02670 2.06849 2.20550 2.27258 2.78739 2.88826 3.12634 3.13567 3.18140 3.24598 3.96723 4.23316 4.33094 4.45737 4.56444 4.77522 4.84871 5.01387 5.05857 5.09766 5.16817 5.23376 5.23757 5.32435 5.33531 5.44736 5.54611 5.56366 5.63009 5.75299 5.78522 5.84449 5.97118 6.07071 6.14478 6.21050 6.26707 6.44396 6.51294 6.80762 6.84709 6.97689 7.16534 7.21840 7.40634 7.67382 7.78374 7.91259 7.99884 8.33375 9.00715 9.71315 10.73516 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025678 B = 0.002330 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.168809 B =12012.500872 C =12309.734039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.024 4.024 4 C -0.116 4.116 5 C -0.158 4.158 6 C -0.137 4.137 7 C 0.496 3.504 8 O -0.510 6.510 9 N -0.659 5.659 10 C 0.033 3.967 11 C -0.089 4.089 12 C -0.221 4.221 13 C 0.148 3.852 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.179 4.179 24 C -0.065 4.065 25 C 0.489 3.511 26 O -0.491 6.491 27 O -0.524 6.524 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.401 0.599 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.270 0.730 44 H 0.120 0.880 45 H 0.128 0.872 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 13.023 -22.147 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.025 4.025 4 C -0.153 4.153 5 C -0.215 4.215 6 C -0.177 4.177 7 C 0.283 3.717 8 O -0.386 6.386 9 N -0.303 5.303 10 C -0.060 4.060 11 C -0.109 4.109 12 C -0.241 4.241 13 C 0.094 3.906 14 O -0.079 6.079 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.199 4.199 24 C -0.085 4.085 25 C 0.329 3.671 26 O -0.376 6.376 27 O -0.337 6.337 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.236 0.764 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.080 0.920 44 H 0.138 0.862 45 H 0.146 0.854 46 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -7.019 11.745 -22.017 25.923 hybrid contribution -0.311 0.391 0.844 0.981 sum -7.330 12.136 -21.173 25.482 Atomic orbital electron populations 1.21897 0.95376 1.02284 1.01500 1.21813 0.95503 0.93038 1.05750 1.20296 0.87300 0.99098 0.95843 1.21668 1.01885 0.99492 0.92277 1.21877 1.01158 1.01286 0.97227 1.21854 1.03681 1.00878 0.91239 1.20633 0.81376 0.85101 0.84566 1.90752 1.36217 1.25721 1.85871 1.43195 1.56546 1.26075 1.04503 1.17246 0.96115 1.05021 0.87578 1.20475 0.97478 0.99991 0.92977 1.20968 0.99150 1.04355 0.99592 1.19420 0.92304 0.91150 0.87743 1.83990 1.40409 1.62399 1.21149 1.21311 0.99272 1.30446 0.95780 0.89080 1.25297 0.97521 0.95482 0.98282 1.70050 1.22072 1.27988 1.29525 0.85710 0.79268 0.79032 0.79389 1.19878 1.20265 1.19222 1.20157 1.01398 1.06352 0.92009 1.20728 0.94257 0.96441 0.97108 1.23061 0.91140 0.80987 0.71867 1.90716 1.69963 1.33130 1.43802 1.84478 1.26467 1.36472 1.86239 0.92658 0.92523 0.92154 0.91050 0.87744 0.89897 0.90564 0.92030 0.93041 0.91714 0.87128 0.87716 0.76432 0.87199 0.85124 0.92000 0.86191 0.85430 0.73479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.21 37.16 0.34 -0.93 16 2 C -0.12 -1.36 3.63 -26.73 -0.10 -1.46 16 3 C -0.02 -0.23 0.27 -155.66 -0.04 -0.27 16 4 C -0.12 -0.77 4.58 -26.73 -0.12 -0.89 16 5 C -0.16 -1.11 9.31 37.15 0.35 -0.77 16 6 C -0.14 -1.16 4.36 -27.89 -0.12 -1.28 16 7 C 0.50 6.53 7.10 -10.99 -0.08 6.45 16 8 O -0.51 -8.85 9.51 -8.49 -0.08 -8.93 16 9 N -0.66 -8.53 5.34 -9.83 -0.05 -8.58 16 10 C 0.03 0.57 6.30 -83.63 -0.53 0.04 16 11 C -0.09 -1.58 9.96 -39.41 -0.39 -1.97 16 12 C -0.22 -4.73 9.16 -39.42 -0.36 -5.10 16 13 C 0.15 3.63 6.65 -39.09 -0.26 3.37 16 14 O -0.18 -5.08 9.75 0.04 0.00 -5.08 16 15 C -0.39 -10.96 9.48 30.88 0.29 -10.66 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 19 Si 0.94 20.50 29.55 -169.99 -5.02 15.47 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.18 -4.03 9.98 -39.42 -0.39 -4.42 16 24 C -0.07 -1.31 8.69 -39.41 -0.34 -1.65 16 25 C 0.49 5.94 4.16 36.00 0.15 6.09 16 26 O -0.49 -7.92 16.14 -23.96 -0.39 -8.31 16 27 O -0.52 -4.93 13.23 -39.26 -0.52 -5.45 16 28 H 0.05 0.44 6.43 -51.93 -0.33 0.11 16 29 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.80 6.39 -51.93 -0.33 0.46 16 32 H 0.10 1.56 5.47 -51.93 -0.28 1.28 16 33 H 0.08 0.41 6.43 -51.93 -0.33 0.08 16 34 H 0.08 0.45 8.12 -51.92 -0.42 0.03 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.43 7.22 -51.93 -0.37 0.05 16 37 H 0.06 0.48 6.43 -51.92 -0.33 0.14 16 38 H 0.11 0.66 6.43 -51.92 -0.33 0.32 16 39 H 0.10 0.69 8.11 -51.93 -0.42 0.27 16 40 H 0.40 3.63 8.82 -40.82 -0.36 3.27 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.13 2.77 5.63 -52.49 -0.30 2.47 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.12 2.65 8.06 -52.48 -0.42 2.22 16 45 H 0.13 2.55 6.23 -52.49 -0.33 2.23 16 46 H 0.41 2.52 9.10 45.56 0.41 2.93 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -35.92 369.98 -6.60 -42.52 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.17 Total: 9.97 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.70 Total: -12.48 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.71 Total: -33.28 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.99 Total: -27.77 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.92 -6.60 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011259927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.727 kcal (2) G-P(sol) polarization free energy of solvation -35.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds