Wall clock time and date at job start Tue Mar 31 2020 05:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38286 * 119.93228 * 2 1 4 4 C 1.38097 * 120.08425 * 179.97438 * 3 2 1 5 5 C 1.38919 * 119.94909 * 359.97438 * 4 3 2 6 6 N 1.39989 * 120.06305 * 179.97438 * 5 4 3 7 7 N 1.39855 * 119.79154 * 311.49497 * 6 5 4 8 8 C 1.29887 * 121.11137 * 199.08378 * 7 6 5 9 9 C 1.46433 * 119.56223 * 180.17809 * 8 7 6 10 10 O 1.21638 * 119.99939 * 179.97438 * 9 8 7 11 11 O 1.34858 * 120.00015 * 0.02562 * 9 8 7 12 12 C 1.34795 * 117.00121 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99712 * 0.02562 * 12 11 9 14 14 C 1.38866 * 120.00019 * 179.97438 * 12 11 9 15 15 N 1.31387 * 120.00101 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99788 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46908 * 60.00873 * 16 14 12 18 18 H 1.48502 * 109.46814 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47484 * 300.00435 * 16 14 12 20 20 C 1.50552 * 120.87765 * 0.20223 * 8 7 6 21 21 C 1.53011 * 109.59935 * 325.75556 * 20 8 7 22 22 C 1.34739 * 119.79105 * 131.21545 * 6 5 4 23 23 O 1.21240 * 120.11341 * 359.74769 * 22 6 5 24 24 C 1.38852 * 119.87414 * 0.02562 * 5 4 3 25 25 C 1.38242 * 119.91309 * 359.97438 * 24 5 4 26 26 Cl 1.73594 * 119.97550 * 179.97438 * 25 24 5 27 27 H 1.09010 * 109.46680 * 90.00329 * 1 2 3 28 28 H 1.08998 * 109.47363 * 210.00019 * 1 2 3 29 29 H 1.08993 * 109.47632 * 330.00644 * 1 2 3 30 30 H 1.07998 * 119.95903 * 0.26856 * 3 2 1 31 31 H 1.08001 * 120.02465 * 180.02562 * 4 3 2 32 32 H 0.96993 * 120.00249 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.44858 * 85.79519 * 20 8 7 34 34 H 1.09005 * 109.44943 * 205.74396 * 20 8 7 35 35 H 1.09004 * 109.50654 * 167.39900 * 21 20 8 36 36 H 1.09003 * 109.51146 * 287.49449 * 21 20 8 37 37 H 1.08002 * 120.04070 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2021 0.0005 5 6 4.2747 0.0002 0.0016 6 7 5.6746 0.0011 0.0016 7 7 6.3689 0.8049 -0.9082 8 6 7.6146 0.5731 -1.1940 9 6 8.3099 1.4388 -2.1487 10 8 9.4766 1.2292 -2.4218 11 8 7.6572 2.4690 -2.7243 12 6 8.3553 3.2269 -3.5933 13 1 9.3898 2.9964 -3.8008 14 6 7.7441 4.3035 -4.2223 15 7 6.4854 4.5837 -3.9701 16 14 8.7118 5.3543 -5.4260 17 1 9.1905 4.5077 -6.5482 18 1 7.8381 6.4318 -5.9559 19 1 9.8761 5.9589 -4.7304 20 6 8.3528 -0.5741 -0.5573 21 6 7.8523 -0.7750 0.8746 22 6 6.3445 -0.7681 0.8819 23 8 5.7371 -1.4554 1.6746 24 6 3.5799 -1.2020 0.0016 25 6 2.1975 -1.1993 0.0011 26 17 1.3273 -2.7013 0.0004 27 1 -0.3633 -0.0001 -1.0278 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6553 2.1327 0.0044 31 1 4.1159 2.1386 0.0010 32 1 6.0586 5.3358 -4.4092 33 1 8.1783 -1.4826 -1.1337 34 1 9.4204 -0.3542 -0.5407 35 1 8.2155 -1.7291 1.2566 36 1 8.2204 0.0338 1.5058 37 1 4.1189 -2.1379 0.0029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011952577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:38 Heat of formation + Delta-G solvation = -44.345925 kcal Electronic energy + Delta-G solvation = -25874.713752 eV Core-core repulsion = 21837.661348 eV Total energy + Delta-G solvation = -4037.052404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.071 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.09810 -39.36374 -38.94182 -37.15494 -36.56019 -35.47195 -34.45214 -32.47345 -31.91834 -31.13108 -30.84570 -27.24227 -25.94620 -25.07717 -23.85814 -22.85673 -21.90662 -20.70472 -18.56639 -18.14391 -17.65812 -17.39936 -16.37514 -16.04419 -15.56407 -15.39387 -15.14141 -14.76582 -14.58200 -14.50218 -14.29050 -14.10214 -13.66824 -13.26333 -12.96377 -12.84618 -12.51476 -12.38634 -12.31618 -12.08571 -11.80996 -11.73090 -11.39434 -11.36651 -11.17425 -10.98257 -10.76494 -10.60041 -10.57918 -10.09021 -9.75209 -9.45560 -9.19980 -8.84426 -8.79527 -8.17142 -6.66691 -4.26953 0.98938 1.15777 1.17258 1.90191 2.29339 2.42428 3.06383 3.06503 3.11260 3.43085 3.62676 3.70809 4.01707 4.26738 4.50386 4.68067 4.71432 4.88461 4.94760 4.97772 5.04982 5.12924 5.26890 5.33727 5.48561 5.53993 5.57804 5.64490 5.66104 5.81045 6.01289 6.07762 6.17997 6.34401 6.39079 6.58926 6.77281 7.14584 7.61091 7.67865 7.98868 8.44782 8.78877 9.57327 10.48297 Molecular weight = 336.07amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.003382 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.519965 B = 8277.449406 C = 9975.046077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.097 4.097 4 C -0.090 4.090 5 C 0.167 3.833 6 N -0.415 5.415 7 N -0.195 5.195 8 C 0.126 3.874 9 C 0.429 3.571 10 O -0.545 6.545 11 O -0.176 6.176 12 C -0.370 4.370 13 H 0.103 0.897 14 C 0.045 3.955 15 N -0.836 5.836 16 Si 0.949 3.051 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.266 1.266 20 C -0.106 4.106 21 C -0.138 4.138 22 C 0.495 3.505 23 O -0.513 6.513 24 C -0.094 4.094 25 C -0.027 4.027 26 Cl -0.068 7.068 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.276 0.724 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.682 -8.214 7.924 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C -0.116 4.116 4 C -0.110 4.110 5 C 0.076 3.924 6 N -0.229 5.229 7 N -0.007 5.007 8 C -0.065 4.065 9 C 0.276 3.724 10 O -0.442 6.442 11 O -0.078 6.078 12 C -0.447 4.447 13 H 0.121 0.879 14 C -0.163 4.163 15 N -0.470 5.470 16 Si 0.773 3.227 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.191 1.191 20 C -0.145 4.145 21 C -0.178 4.178 22 C 0.284 3.716 23 O -0.385 6.385 24 C -0.115 4.115 25 C -0.055 4.055 26 Cl -0.039 7.039 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.721 -8.119 8.147 14.435 hybrid contribution 1.019 -0.144 -0.343 1.085 sum -7.702 -8.264 7.804 13.730 Atomic orbital electron populations 1.20853 0.90144 1.03349 1.02970 1.19802 0.96854 0.91260 1.00251 1.20881 0.93268 0.97349 1.00110 1.21316 0.94169 0.97843 0.97691 1.17095 0.79855 0.93338 1.02115 1.46390 1.04228 1.41353 1.30884 1.75497 1.08740 1.12679 1.03835 1.24181 0.91196 0.95810 0.95291 1.19406 0.85359 0.83468 0.84180 1.90721 1.16672 1.72755 1.64056 1.84000 1.41938 1.33842 1.48047 1.21469 0.96885 1.07822 1.18540 0.87916 1.25523 0.96157 0.96755 0.97906 1.69982 1.10582 1.27105 1.39376 0.85648 0.78884 0.78724 0.79473 1.19096 1.20097 1.19108 1.20914 1.03464 0.96475 0.93673 1.21863 0.90193 1.06861 0.98867 1.21480 0.91544 0.78459 0.80146 1.90734 1.70258 1.39591 1.37904 1.20821 0.92139 0.98017 1.00527 1.20387 0.91388 0.86796 1.06903 1.98343 1.76366 1.32212 1.96982 0.90569 0.90950 0.91001 0.84260 0.83928 0.91370 0.88194 0.86266 0.86174 0.87179 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.61 36.01 0.35 -0.73 16 2 C -0.08 -0.99 5.89 -104.55 -0.62 -1.61 16 3 C -0.10 -1.23 9.69 -39.62 -0.38 -1.62 16 4 C -0.09 -1.38 9.72 -39.38 -0.38 -1.76 16 5 C 0.17 2.78 5.65 -83.65 -0.47 2.30 16 6 N -0.42 -7.17 3.57 -9.83 -0.04 -7.20 16 7 N -0.20 -3.78 10.88 34.86 0.38 -3.40 16 8 C 0.13 2.37 6.77 -80.19 -0.54 1.82 16 9 C 0.43 10.07 7.84 34.03 0.27 10.34 16 10 O -0.54 -13.35 15.48 -19.37 -0.30 -13.65 16 11 O -0.18 -4.79 9.52 -21.82 -0.21 -5.00 16 12 C -0.37 -10.20 9.65 30.96 0.30 -9.90 16 13 H 0.10 2.79 6.86 -52.48 -0.36 2.43 16 14 C 0.04 1.17 5.50 -17.51 -0.10 1.07 16 15 N -0.84 -22.89 13.67 55.49 0.76 -22.13 16 16 Si 0.95 19.65 29.55 -169.99 -5.02 14.63 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 20 C -0.11 -1.44 5.86 -27.95 -0.16 -1.61 16 21 C -0.14 -1.66 6.20 -27.84 -0.17 -1.83 16 22 C 0.49 7.81 7.32 -10.96 -0.08 7.73 16 23 O -0.51 -8.98 15.67 5.59 0.09 -8.89 16 24 C -0.09 -1.45 8.49 -39.35 -0.33 -1.78 16 25 C -0.03 -0.38 6.31 -39.53 -0.25 -0.63 16 26 Cl -0.07 -0.82 27.28 -51.86 -1.41 -2.23 16 27 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.07 0.65 6.89 -51.93 -0.36 0.29 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 32 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.12 1.54 7.54 -51.93 -0.39 1.15 16 35 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.14 2.09 7.40 -52.49 -0.39 1.70 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -31.67 345.21 -6.72 -38.40 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.59 Total: 2.48 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -2.58 Total: 1.80 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 1.10 Total: -32.74 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.42 Total: -27.54 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.41 Total: -2.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.67 -6.72 -38.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011952577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.948 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds