Wall clock time and date at job start Tue Mar 31 2020 05:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38373 * 119.84312 * 2 1 4 4 C 1.37929 * 120.16054 * 179.97438 * 3 2 1 5 5 C 1.39694 * 119.83760 * 0.02562 * 4 3 2 6 6 C 1.47477 * 120.15455 * 179.97438 * 5 4 3 7 7 N 1.29777 * 120.00024 * 180.02562 * 6 5 4 8 8 N 1.40097 * 120.00320 * 174.79509 * 7 6 5 9 9 C 1.46495 * 119.99768 * 4.75669 * 8 7 6 10 10 C 1.50708 * 109.46931 * 89.92722 * 9 8 7 11 11 H 1.07994 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99950 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99733 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00081 * 0.02562 * 12 10 9 15 15 H 1.48491 * 109.47062 * 90.00254 * 14 12 10 16 16 H 1.48503 * 109.47169 * 210.00182 * 14 12 10 17 17 H 1.48508 * 109.46942 * 329.99766 * 14 12 10 18 18 C 1.34772 * 120.00189 * 184.76369 * 8 7 6 19 19 O 1.21591 * 120.00123 * 183.75934 * 18 8 7 20 20 C 1.47792 * 120.00248 * 3.75276 * 18 8 7 21 21 C 1.39603 * 120.14497 * 335.44604 * 20 18 8 22 22 C 1.37944 * 119.85064 * 179.74045 * 21 20 18 23 23 C 1.38369 * 120.14788 * 0.53205 * 22 21 20 24 24 C 1.50692 * 119.85296 * 179.74170 * 23 22 21 25 25 C 1.38372 * 120.29639 * 359.72095 * 23 22 21 26 26 C 1.37953 * 120.14450 * 0.02562 * 25 23 22 27 27 C 1.39687 * 119.68988 * 359.97438 * 5 4 3 28 28 C 1.37934 * 119.83992 * 0.02562 * 27 5 4 29 29 H 1.09010 * 109.46770 * 90.00292 * 1 2 3 30 30 H 1.08995 * 109.47446 * 210.00338 * 1 2 3 31 31 H 1.09001 * 109.47450 * 330.00857 * 1 2 3 32 32 H 1.08004 * 119.91933 * 359.97438 * 3 2 1 33 33 H 1.07995 * 120.07926 * 179.73937 * 4 3 2 34 34 H 1.07998 * 120.00192 * 359.97438 * 6 5 4 35 35 H 1.09000 * 109.47595 * 209.92568 * 9 8 7 36 36 H 1.08999 * 109.47501 * 329.93321 * 9 8 7 37 37 H 0.97010 * 119.99733 * 179.97438 * 13 12 10 38 38 H 1.08001 * 120.07343 * 359.97415 * 21 20 18 39 39 H 1.07997 * 119.93047 * 180.22822 * 22 21 20 40 40 H 1.09002 * 109.47379 * 269.97532 * 24 23 22 41 41 H 1.09001 * 109.47101 * 29.97916 * 24 23 22 42 42 H 1.09007 * 109.47082 * 149.97698 * 24 23 22 43 43 H 1.07996 * 119.92641 * 180.02562 * 25 23 22 44 44 H 1.08000 * 120.07028 * 179.97438 * 26 25 23 45 45 H 1.08001 * 120.08229 * 180.02562 * 27 5 4 46 46 H 1.07994 * 119.92396 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2002 0.0000 4 6 3.5748 1.2079 0.0005 5 6 4.2766 0.0000 0.0005 6 6 5.7513 0.0000 0.0005 7 7 6.4002 -1.1239 0.0000 8 7 7.7969 -1.1264 -0.1100 9 6 8.5331 0.1401 -0.1196 10 6 8.8954 0.5211 1.2928 11 1 8.6066 -0.1166 2.1151 12 6 9.5957 1.6839 1.5350 13 7 9.9123 2.0161 2.7674 14 14 10.0947 2.7872 0.1127 15 1 9.0212 3.7807 -0.1434 16 1 11.3540 3.4963 0.4544 17 1 10.3059 1.9618 -1.1037 18 6 8.4631 -2.2939 -0.2073 19 8 9.6787 -2.2998 -0.2339 20 6 7.7162 -3.5670 -0.2814 21 6 6.4255 -3.6542 0.2434 22 6 5.7318 -4.8441 0.1662 23 6 6.3167 -5.9527 -0.4199 24 6 5.5551 -7.2507 -0.4956 25 6 7.5976 -5.8746 -0.9374 26 6 8.3004 -4.6893 -0.8713 27 6 3.5749 -1.2078 0.0005 28 6 2.1955 -1.2003 0.0000 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6517 2.1333 -0.0004 33 1 4.1109 2.1454 -0.0037 34 1 6.2913 0.9353 0.0001 35 1 9.4423 0.0274 -0.7101 36 1 7.9096 0.9195 -0.5575 37 1 10.4053 2.8340 2.9379 38 1 5.9697 -2.7910 0.7055 39 1 4.7319 -4.9119 0.5685 40 1 5.7565 -7.8428 0.3972 41 1 4.4871 -7.0422 -0.5600 42 1 5.8707 -7.8063 -1.3787 43 1 8.0482 -6.7434 -1.3940 44 1 9.3003 -4.6298 -1.2752 45 1 4.1110 -2.1454 0.0010 46 1 1.6517 -2.1332 0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012111577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:55 Heat of formation + Delta-G solvation = 63.500153 kcal Electronic energy + Delta-G solvation = -27964.560962 eV Core-core repulsion = 24206.284153 eV Total energy + Delta-G solvation = -3758.276809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.90943 -39.27208 -38.26730 -36.51666 -33.72499 -32.96946 -32.48770 -31.14107 -30.94530 -30.65492 -28.78628 -27.30310 -26.55761 -23.28658 -22.98721 -22.58978 -22.31394 -21.35745 -20.35478 -18.76324 -17.64168 -17.10278 -16.52962 -15.78312 -15.35174 -15.18365 -15.00236 -14.89201 -14.66646 -14.45624 -13.91627 -13.85377 -13.69691 -13.51348 -13.40274 -13.29382 -12.92668 -12.64743 -12.57200 -12.36201 -12.26067 -11.98906 -11.84786 -11.63508 -11.43253 -11.33013 -11.12943 -11.01682 -10.81025 -10.68216 -10.23131 -9.72009 -9.66695 -9.22688 -8.92729 -8.84130 -8.74697 -8.72854 -8.48566 -7.54703 -6.21146 -4.23147 0.83274 1.18567 1.44967 1.60780 2.50597 3.00852 3.16238 3.27596 3.28896 3.38372 3.93000 4.16942 4.27024 4.49266 4.77394 4.80274 4.87146 4.94926 4.97935 5.08799 5.10097 5.17540 5.23059 5.33143 5.42668 5.43427 5.49473 5.62630 5.64189 5.67288 5.72829 5.79331 5.88601 5.97227 6.06114 6.13023 6.15918 6.25903 6.39443 6.48565 6.50567 6.56261 6.65371 6.67719 6.69341 6.78608 6.98406 7.12880 7.37910 7.59468 8.19325 8.28984 8.77878 8.86322 9.36318 10.91608 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.006235 B = 0.005211 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4489.773837 B = 5371.800350 C = 9413.686655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.087 4.087 5 C -0.043 4.043 6 C 0.102 3.898 7 N -0.246 5.246 8 N -0.437 5.437 9 C 0.186 3.814 10 C -0.536 4.536 11 H 0.077 0.923 12 C 0.079 3.921 13 N -0.888 5.888 14 Si 0.871 3.129 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.264 1.264 18 C 0.580 3.420 19 O -0.516 6.516 20 C -0.128 4.128 21 C -0.064 4.064 22 C -0.141 4.141 23 C -0.071 4.071 24 C -0.115 4.115 25 C -0.140 4.140 26 C -0.063 4.063 27 C -0.085 4.085 28 C -0.126 4.126 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.054 0.946 36 H 0.032 0.968 37 H 0.267 0.733 38 H 0.160 0.840 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.123 0.877 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.597 -9.463 -8.121 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.108 4.108 5 C -0.046 4.046 6 C -0.106 4.106 7 N -0.052 5.052 8 N -0.255 5.255 9 C 0.065 3.935 10 C -0.574 4.574 11 H 0.095 0.905 12 C -0.125 4.125 13 N -0.525 5.525 14 Si 0.697 3.303 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.188 1.188 18 C 0.370 3.630 19 O -0.390 6.390 20 C -0.131 4.131 21 C -0.082 4.082 22 C -0.159 4.159 23 C -0.071 4.071 24 C -0.171 4.171 25 C -0.158 4.158 26 C -0.082 4.082 27 C -0.105 4.105 28 C -0.144 4.144 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.177 0.823 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.631 -10.318 -7.987 21.934 hybrid contribution 0.750 1.630 -0.448 1.849 sum -16.881 -8.688 -8.435 20.775 Atomic orbital electron populations 1.20801 0.91422 1.02704 1.02177 1.20012 0.95942 0.93296 0.99145 1.20898 0.93839 0.97522 1.01986 1.21272 0.94080 0.97363 0.98049 1.18480 0.90023 0.93735 1.02325 1.24507 0.92912 0.96404 0.96817 1.74152 0.92767 1.26073 1.12232 1.49034 1.00631 1.08147 1.67663 1.20160 0.92734 0.80774 0.99876 1.21165 1.37402 1.07997 0.90873 0.90522 1.24823 0.94757 0.97253 0.95634 1.69884 1.38843 1.24674 1.19131 0.86923 0.79015 0.81131 0.83242 1.19767 1.20522 1.18808 1.17988 0.86436 0.82496 0.76096 1.90797 1.12970 1.86148 1.49049 1.19904 0.95716 0.93813 1.03671 1.22271 0.92582 0.98224 0.95124 1.21036 1.00385 0.92699 1.01808 1.20082 0.94602 0.95618 0.96806 1.20815 0.99679 0.94359 1.02265 1.20874 0.94641 0.97644 1.02625 1.21222 0.99404 0.91406 0.96174 1.21446 0.93866 0.98027 0.97135 1.20950 0.94017 0.97452 1.01987 0.91272 0.91613 0.91595 0.85891 0.85225 0.84703 0.92845 0.95044 0.92271 0.82343 0.85965 0.91149 0.91544 0.91652 0.85938 0.85282 0.84995 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.00 36.00 0.36 -0.45 16 2 C -0.08 -0.83 5.89 -104.52 -0.62 -1.44 16 3 C -0.12 -1.30 9.68 -39.64 -0.38 -1.68 16 4 C -0.09 -1.06 9.79 -39.15 -0.38 -1.44 16 5 C -0.04 -0.61 5.87 -105.05 -0.62 -1.22 16 6 C 0.10 1.74 10.16 -14.66 -0.15 1.59 16 7 N -0.25 -4.62 6.59 32.16 0.21 -4.41 16 8 N -0.44 -9.79 3.48 -62.44 -0.22 -10.01 16 9 C 0.19 4.58 3.72 -5.19 -0.02 4.56 16 10 C -0.54 -15.35 9.94 -34.44 -0.34 -15.69 16 11 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 12 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 13 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 14 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 18 C 0.58 13.12 7.57 -12.36 -0.09 13.02 16 19 O -0.52 -13.27 16.21 5.29 0.09 -13.18 16 20 C -0.13 -2.36 5.78 -104.97 -0.61 -2.97 16 21 C -0.06 -1.02 8.61 -39.18 -0.34 -1.36 16 22 C -0.14 -1.84 9.68 -39.64 -0.38 -2.22 16 23 C -0.07 -0.86 5.89 -104.53 -0.62 -1.47 16 24 C -0.11 -0.97 10.00 36.00 0.36 -0.61 16 25 C -0.14 -1.82 9.68 -39.64 -0.38 -2.20 16 26 C -0.06 -1.01 9.59 -39.18 -0.38 -1.39 16 27 C -0.08 -1.07 9.58 -39.15 -0.38 -1.44 16 28 C -0.13 -1.33 9.68 -39.64 -0.38 -1.72 16 29 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.14 2.43 5.89 -52.49 -0.31 2.12 16 35 H 0.05 1.40 6.53 -51.93 -0.34 1.06 16 36 H 0.03 0.71 5.52 -51.93 -0.29 0.43 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.16 2.64 4.24 -52.49 -0.22 2.42 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 42 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.13 2.03 7.84 -52.49 -0.41 1.62 16 45 H 0.13 1.65 6.34 -52.49 -0.33 1.31 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -33.75 386.66 -9.56 -43.31 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.13 Total: 4.42 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -5.44 Total: -15.96 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.77 Total: -40.62 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.75 -9.56 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012111577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.812 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds