Wall clock time and date at job start Tue Mar 31 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35964 * 117.00064 * 2 1 4 4 C 1.38549 * 119.99655 * 0.02562 * 3 2 1 5 5 C 1.38548 * 120.41401 * 179.97438 * 4 3 2 6 6 C 1.37777 * 120.40999 * 0.27658 * 5 4 3 7 7 C 1.40028 * 119.98901 * 359.46923 * 6 5 4 8 8 C 1.46704 * 120.20646 * 180.23206 * 7 6 5 9 9 C 1.35846 * 120.00196 * 341.08225 * 8 7 6 10 10 S 1.77490 * 127.96552 * 351.88811 * 9 8 7 11 11 C 1.77221 * 94.57020 * 179.97438 * 10 9 8 12 12 S 1.71194 * 126.55685 * 180.09346 * 11 10 9 13 13 N 1.33796 * 106.88988 * 0.30293 * 11 10 9 14 14 C 1.32262 * 119.52088 * 359.77052 * 13 11 10 15 15 O 1.21717 * 122.52356 * 180.02562 * 14 13 11 16 16 C 1.39204 * 119.99683 * 180.02562 * 3 2 1 17 17 O 1.35568 * 120.20533 * 359.97438 * 16 3 2 18 18 C 1.34750 * 116.99831 * 89.99860 * 17 16 3 19 19 H 1.08001 * 119.99807 * 0.02562 * 18 17 16 20 20 C 1.38681 * 119.99752 * 179.97438 * 18 17 16 21 21 N 1.31534 * 120.00371 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00104 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47234 * 59.99774 * 22 20 18 24 24 H 1.48493 * 109.47288 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46608 * 299.99872 * 22 20 18 26 26 H 1.09002 * 109.47291 * 300.00222 * 1 2 3 27 27 H 1.09001 * 109.46786 * 59.99797 * 1 2 3 28 28 H 1.08999 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.79168 * 0.02562 * 4 3 2 30 30 H 1.07993 * 119.79147 * 180.02562 * 5 4 3 31 31 H 1.07998 * 120.00748 * 179.70777 * 6 5 4 32 32 H 1.08002 * 120.00026 * 161.08022 * 8 7 6 33 33 H 0.97006 * 120.24062 * 179.74448 * 13 11 10 34 34 H 0.96993 * 120.00261 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2916 2.3734 0.0005 5 6 1.9116 3.6124 0.0011 6 6 3.2863 3.7043 -0.0047 7 6 4.0656 2.5410 0.0002 8 6 5.5297 2.6334 -0.0008 9 6 6.1374 3.7852 -0.3874 10 16 5.3912 5.2236 -1.1114 11 6 6.9136 6.1210 -1.2438 12 16 7.1149 7.7006 -1.8725 13 7 7.8765 5.3262 -0.7628 14 6 7.5630 4.1241 -0.3088 15 8 8.3942 3.3571 0.1407 16 6 3.4364 1.2842 -0.0005 17 8 4.1787 0.1498 -0.0005 18 6 4.5132 -0.3623 -1.2012 19 1 4.1911 0.1299 -2.1069 20 6 5.2720 -1.5209 -1.2738 21 7 5.6656 -2.1195 -0.1707 22 14 5.7364 -2.2306 -2.9381 23 1 6.5318 -1.2326 -3.6973 24 1 6.5435 -3.4617 -2.7436 25 1 4.5032 -2.5612 -3.6966 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2133 2.3129 0.0014 30 1 1.3136 4.5116 0.0019 31 1 3.7627 4.6735 -0.0090 32 1 6.1245 1.7857 0.3060 33 1 8.7979 5.6292 -0.7475 34 1 6.1960 -2.9300 -0.2214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012371659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:24 Heat of formation + Delta-G solvation = -7.458102 kcal Electronic energy + Delta-G solvation = -23716.416891 eV Core-core repulsion = 20028.041979 eV Total energy + Delta-G solvation = -3688.374913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.027 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.23990 -40.14419 -37.82709 -36.95662 -36.59740 -33.85850 -32.22832 -29.59176 -29.52636 -27.29163 -26.94541 -25.47512 -24.82018 -22.40248 -21.69049 -20.00853 -19.18946 -18.49626 -18.22373 -17.43086 -16.64619 -16.44654 -16.28288 -16.02265 -15.45068 -15.32207 -14.91484 -14.46369 -14.13176 -14.04838 -13.52487 -13.18009 -12.84676 -12.48535 -12.41133 -12.12190 -11.98869 -11.66589 -11.49570 -11.39621 -11.10286 -11.07183 -10.74490 -10.57496 -10.53567 -10.30706 -9.94613 -9.40658 -8.71204 -8.47010 -8.08197 -7.86390 -7.63335 -6.31617 -4.00454 -0.55441 0.50720 0.56382 1.38814 1.54361 1.59999 1.82786 2.51843 2.66556 3.14947 3.17258 3.19993 3.46655 3.77355 3.87895 4.11198 4.76058 4.86807 4.88635 5.01201 5.16123 5.25672 5.26918 5.29149 5.41905 5.58608 5.59327 5.74425 5.89061 6.08380 6.21274 6.36394 6.39949 6.51005 6.79348 7.14992 7.21979 7.63396 8.03724 9.09879 9.71362 10.85771 Molecular weight = 337.03amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.004418 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.727767 B = 6336.730984 C = 8216.969056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.287 6.287 3 C 0.093 3.907 4 C -0.174 4.174 5 C -0.108 4.108 6 C -0.115 4.115 7 C -0.122 4.122 8 C 0.161 3.839 9 C -0.317 4.317 10 S 0.148 5.852 11 C 0.261 3.739 12 S -0.427 6.427 13 N -0.615 5.615 14 C 0.550 3.450 15 O -0.461 6.461 16 C 0.171 3.829 17 O -0.221 6.221 18 C -0.369 4.369 19 H 0.073 0.927 20 C 0.038 3.962 21 N -0.869 5.869 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.273 1.273 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.174 0.826 33 H 0.428 0.572 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 10.385 0.114 12.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.199 6.199 3 C 0.046 3.954 4 C -0.193 4.193 5 C -0.127 4.127 6 C -0.136 4.136 7 C -0.124 4.124 8 C 0.135 3.865 9 C -0.434 4.434 10 S 0.387 5.613 11 C -0.092 4.092 12 S -0.295 6.295 13 N -0.257 5.257 14 C 0.336 3.664 15 O -0.335 6.335 16 C 0.123 3.877 17 O -0.133 6.133 18 C -0.444 4.444 19 H 0.091 0.909 20 C -0.164 4.164 21 N -0.507 5.507 22 Si 0.756 3.244 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.198 1.198 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.191 0.809 33 H 0.270 0.730 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.567 10.687 -0.122 13.095 hybrid contribution 1.476 -1.211 -0.204 1.920 sum -6.091 9.476 -0.326 11.270 Atomic orbital electron populations 1.23060 0.79593 1.03835 1.00611 1.86371 1.20014 1.25471 1.88029 1.19729 0.92210 0.84928 0.98518 1.21347 0.99997 0.92014 1.05966 1.20629 0.93778 0.96991 1.01257 1.21215 0.94041 0.96272 1.02075 1.19111 0.91706 0.93119 1.08457 1.22219 0.93273 0.92577 0.78382 1.23612 0.95125 1.02372 1.22283 1.86302 1.03308 1.06548 1.65147 1.28997 0.95909 0.98892 0.85415 1.93001 1.90428 0.97429 1.48594 1.43464 1.13268 1.15265 1.53750 1.17976 0.89502 0.80803 0.78074 1.90988 1.52489 1.48748 1.41245 1.18683 0.87317 0.88120 0.93614 1.83806 1.66532 1.33436 1.29499 1.20902 1.32843 1.09655 0.81039 0.90947 1.25046 0.97046 0.95717 0.98596 1.69983 1.35446 1.18786 1.26506 0.85943 0.78768 0.78759 0.80885 1.19828 1.20378 1.19835 0.93070 0.93045 0.88370 0.85140 0.85249 0.85292 0.80893 0.72994 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 101.05 0.99 1.28 16 2 O -0.29 -5.29 10.28 -34.16 -0.35 -5.64 16 3 C 0.09 1.65 6.70 -39.11 -0.26 1.39 16 4 C -0.17 -2.34 9.03 -39.35 -0.36 -2.70 16 5 C -0.11 -1.33 10.02 -39.64 -0.40 -1.72 16 6 C -0.12 -1.59 8.66 -39.08 -0.34 -1.93 16 7 C -0.12 -2.10 5.83 -104.94 -0.61 -2.71 16 8 C 0.16 2.74 9.50 -37.02 -0.35 2.39 16 9 C -0.32 -4.77 6.35 -37.01 -0.23 -5.01 16 10 S 0.15 1.89 18.96 -107.50 -2.04 -0.15 16 11 C 0.26 3.44 7.98 53.62 0.43 3.87 16 12 S -0.43 -6.30 31.19 -107.50 -3.35 -9.66 16 13 N -0.61 -7.80 5.14 -13.27 -0.07 -7.86 16 14 C 0.55 8.33 7.99 -13.93 -0.11 8.22 16 15 O -0.46 -8.28 17.93 5.17 0.09 -8.19 16 16 C 0.17 3.48 5.63 -38.35 -0.22 3.26 16 17 O -0.22 -5.60 8.74 -13.70 -0.12 -5.72 16 18 C -0.37 -9.63 9.81 30.90 0.30 -9.33 16 19 H 0.07 1.81 7.76 -52.49 -0.41 1.41 16 20 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 21 N -0.87 -24.73 13.67 55.48 0.76 -23.97 16 22 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 27 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.13 1.34 6.26 -52.49 -0.33 1.01 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.13 1.57 4.44 -27.06 -0.12 1.44 16 32 H 0.17 3.29 7.79 -52.49 -0.41 2.88 16 33 H 0.43 4.55 8.91 -40.82 -0.36 4.18 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -31.37 334.55 -8.72 -40.09 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -2.40 Total: 2.72 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.25 Total: -2.07 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.69 Total: -31.83 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.38 Total: -19.55 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -5.39 Total: -9.81 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.37 -8.72 -40.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012371659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.632 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds