Wall clock time and date at job start Tue Mar 31 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35964 * 117.00064 * 2 1 4 4 C 1.38549 * 119.99655 * 0.02562 * 3 2 1 5 5 C 1.38548 * 120.41401 * 179.97438 * 4 3 2 6 6 C 1.37777 * 120.40999 * 0.27658 * 5 4 3 7 7 C 1.40028 * 119.98901 * 359.46923 * 6 5 4 8 8 C 1.46704 * 120.20646 * 180.23206 * 7 6 5 9 9 C 1.35846 * 120.00196 * 341.08225 * 8 7 6 10 10 S 1.77490 * 127.96552 * 351.88811 * 9 8 7 11 11 C 1.77221 * 94.57020 * 179.97438 * 10 9 8 12 12 S 1.71194 * 126.55685 * 180.09346 * 11 10 9 13 13 N 1.33796 * 106.88988 * 0.30293 * 11 10 9 14 14 C 1.32262 * 119.52088 * 359.77052 * 13 11 10 15 15 O 1.21717 * 122.52356 * 180.02562 * 14 13 11 16 16 C 1.39204 * 119.99683 * 180.02562 * 3 2 1 17 17 O 1.35568 * 120.20533 * 359.97438 * 16 3 2 18 18 C 1.34750 * 116.99831 * 89.99860 * 17 16 3 19 19 H 1.08001 * 119.99807 * 0.02562 * 18 17 16 20 20 C 1.38681 * 119.99752 * 179.97438 * 18 17 16 21 21 N 1.31534 * 120.00371 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00104 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47234 * 59.99774 * 22 20 18 24 24 H 1.48493 * 109.47288 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46608 * 299.99872 * 22 20 18 26 26 H 1.09002 * 109.47291 * 300.00222 * 1 2 3 27 27 H 1.09001 * 109.46786 * 59.99797 * 1 2 3 28 28 H 1.08999 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.79168 * 0.02562 * 4 3 2 30 30 H 1.07993 * 119.79147 * 180.02562 * 5 4 3 31 31 H 1.07998 * 120.00748 * 179.70777 * 6 5 4 32 32 H 1.08002 * 120.00026 * 161.08022 * 8 7 6 33 33 H 0.97006 * 120.24062 * 179.74448 * 13 11 10 34 34 H 0.96993 * 120.00261 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2916 2.3734 0.0005 5 6 1.9116 3.6124 0.0011 6 6 3.2863 3.7043 -0.0047 7 6 4.0656 2.5410 0.0002 8 6 5.5297 2.6334 -0.0008 9 6 6.1374 3.7852 -0.3874 10 16 5.3912 5.2236 -1.1114 11 6 6.9136 6.1210 -1.2438 12 16 7.1149 7.7006 -1.8725 13 7 7.8765 5.3262 -0.7628 14 6 7.5630 4.1241 -0.3088 15 8 8.3942 3.3571 0.1407 16 6 3.4364 1.2842 -0.0005 17 8 4.1787 0.1498 -0.0005 18 6 4.5132 -0.3623 -1.2012 19 1 4.1911 0.1299 -2.1069 20 6 5.2720 -1.5209 -1.2738 21 7 5.6656 -2.1195 -0.1707 22 14 5.7364 -2.2306 -2.9381 23 1 6.5318 -1.2326 -3.6973 24 1 6.5435 -3.4617 -2.7436 25 1 4.5032 -2.5612 -3.6966 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2133 2.3129 0.0014 30 1 1.3136 4.5116 0.0019 31 1 3.7627 4.6735 -0.0090 32 1 6.1245 1.7857 0.3060 33 1 8.7979 5.6292 -0.7475 34 1 6.1960 -2.9300 -0.2214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012371659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:23 Heat of formation + Delta-G solvation = -28.338643 kcal Electronic energy + Delta-G solvation = -23717.322340 eV Core-core repulsion = 20028.041979 eV Total energy + Delta-G solvation = -3689.280361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.027 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.49603 -41.41727 -39.16238 -38.28451 -38.04197 -35.12528 -34.11477 -30.90570 -30.72484 -28.38588 -28.05782 -27.12244 -26.29200 -23.62095 -22.95184 -21.24849 -20.43689 -20.04548 -19.55187 -18.81020 -18.07757 -17.68250 -17.52771 -17.28365 -16.66940 -16.58085 -16.25670 -15.91602 -15.57403 -15.26631 -15.10155 -14.35838 -14.10946 -13.81915 -13.68884 -13.45240 -13.30243 -13.12371 -12.96564 -12.61774 -12.39600 -12.29155 -12.23776 -12.01021 -11.82751 -11.74422 -11.59832 -10.58398 -10.38464 -9.90491 -9.26609 -9.09408 -8.85650 -8.25969 -6.01093 -1.77801 -0.70472 -0.60267 0.16358 0.35369 0.39320 0.59175 1.34533 1.36332 1.39380 1.41944 1.48956 2.23168 2.35934 2.64627 2.65852 3.07924 3.53047 3.56301 3.85668 4.03073 4.05385 4.17727 4.39201 4.41444 4.44258 4.65549 4.68316 4.73742 4.84331 4.87678 5.14029 5.20774 5.22867 5.31981 5.66876 5.98454 6.09185 6.50713 7.15827 7.97040 8.95262 Molecular weight = 337.03amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.004418 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.727767 B = 6336.730984 C = 8216.969056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.333 6.333 3 C 0.077 3.923 4 C -0.156 4.156 5 C -0.085 4.085 6 C -0.111 4.111 7 C -0.124 4.124 8 C 0.147 3.853 9 C -0.313 4.313 10 S 0.209 5.791 11 C 0.265 3.735 12 S -0.442 6.442 13 N -0.603 5.603 14 C 0.556 3.444 15 O -0.491 6.491 16 C 0.107 3.893 17 O -0.260 6.260 18 C -0.368 4.368 19 H 0.071 0.929 20 C -0.023 4.023 21 N -0.926 5.926 22 Si 0.994 3.006 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.262 1.262 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.172 0.828 30 H 0.183 0.817 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.439 0.561 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 13.806 -1.086 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.030 3.970 4 C -0.175 4.175 5 C -0.103 4.103 6 C -0.132 4.132 7 C -0.125 4.125 8 C 0.120 3.880 9 C -0.430 4.430 10 S 0.449 5.551 11 C -0.088 4.088 12 S -0.308 6.308 13 N -0.246 5.246 14 C 0.342 3.658 15 O -0.367 6.367 16 C 0.060 3.940 17 O -0.174 6.174 18 C -0.445 4.445 19 H 0.089 0.911 20 C -0.218 4.218 21 N -0.568 5.568 22 Si 0.816 3.184 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.186 1.186 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.124 0.876 29 H 0.189 0.811 30 H 0.200 0.800 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.284 0.716 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.026 14.182 -1.337 17.420 hybrid contribution 2.115 -1.914 0.211 2.860 sum -7.911 12.268 -1.126 14.641 Atomic orbital electron populations 1.23403 0.76559 1.05274 1.02711 1.86302 1.23382 1.26667 1.88363 1.19857 0.91551 0.86336 0.99219 1.21801 1.01755 0.90665 1.03235 1.21272 0.93238 0.98378 0.97366 1.21477 0.94916 0.95548 1.01281 1.19199 0.91572 0.93379 1.08346 1.21946 0.93699 0.92470 0.79853 1.23704 0.95662 1.03002 1.20589 1.86073 1.01788 1.03445 1.63834 1.29019 0.96327 0.98501 0.84911 1.93132 1.90620 0.97928 1.49170 1.43267 1.14039 1.14294 1.53029 1.18027 0.89267 0.81072 0.77457 1.90984 1.53321 1.49837 1.42536 1.19173 0.88651 0.87614 0.98523 1.83779 1.68061 1.36011 1.29500 1.21105 1.32626 1.08918 0.81804 0.91120 1.26062 0.97319 0.96295 1.02146 1.70135 1.37987 1.19805 1.28914 0.84988 0.78780 0.77977 0.76650 1.19034 1.20214 1.18627 0.90695 0.90877 0.87614 0.81074 0.79976 0.83305 0.84438 0.71641 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -12.47 10.28 -79.25 -0.81 -13.29 16 3 C 0.08 2.71 6.70 22.58 0.15 2.86 16 4 C -0.16 -3.59 9.03 22.42 0.20 -3.38 16 5 C -0.08 -1.63 10.02 22.23 0.22 -1.41 16 6 C -0.11 -2.72 8.66 22.59 0.20 -2.52 16 7 C -0.12 -4.26 5.83 -20.07 -0.12 -4.37 16 8 C 0.15 5.20 9.50 23.93 0.23 5.43 16 9 C -0.31 -9.25 6.35 23.94 0.15 -9.09 16 10 S 0.21 4.68 18.96 -56.49 -1.07 3.61 16 11 C 0.27 6.29 7.98 129.94 1.04 7.33 16 12 S -0.44 -11.85 31.19 -56.49 -1.76 -13.61 16 13 N -0.60 -14.25 5.14 -315.50 -1.62 -15.87 16 14 C 0.56 16.56 7.99 86.85 0.69 17.26 16 15 O -0.49 -18.05 17.93 -4.40 -0.08 -18.13 16 16 C 0.11 4.53 5.63 23.07 0.13 4.66 16 17 O -0.26 -14.25 8.74 -6.03 -0.05 -14.30 16 18 C -0.37 -20.46 9.81 67.93 0.67 -19.79 16 19 H 0.07 3.74 7.76 -2.91 -0.02 3.72 16 20 C -0.02 -1.28 5.49 84.84 0.47 -0.81 16 21 N -0.93 -56.54 13.67 21.62 0.30 -56.24 16 22 Si 0.99 43.67 29.55 68.60 2.03 45.69 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 26 H 0.07 1.24 7.65 -2.39 -0.02 1.22 16 27 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 28 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.17 2.52 6.26 -2.91 -0.02 2.50 16 30 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.15 2.96 4.44 -19.08 -0.08 2.88 16 32 H 0.14 5.85 7.79 -2.91 -0.02 5.83 16 33 H 0.44 8.60 8.91 -92.70 -0.83 7.77 16 34 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -75.42 334.55 2.36 -73.06 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.30 Total: 11.50 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 5.14 Total: -2.42 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -1.32 Total: -72.11 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.95 Total: -45.72 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -7.17 SS G_CDS: -2.83 Total: -10.00 kcal Total: -75.42 2.36 -73.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012371659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.718 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds