Wall clock time and date at job start Tue Mar 31 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30271 * 125.69688 * 2 1 4 4 N 1.39983 * 109.76110 * 180.02562 * 3 2 1 5 5 C 1.46493 * 125.92147 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47332 * 90.02711 * 5 4 3 7 7 H 1.07996 * 119.99779 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00038 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00273 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99748 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47067 * 60.00554 * 10 8 6 12 12 H 1.48501 * 109.47023 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47176 * 300.00309 * 10 8 6 14 14 C 1.37141 * 108.15947 * 0.02562 * 4 3 2 15 15 N 1.32419 * 133.31229 * 179.97438 * 14 4 3 16 16 C 1.32250 * 121.90360 * 179.72511 * 15 14 4 17 17 C 1.48293 * 119.28540 * 180.27035 * 16 15 14 18 18 C 1.39401 * 120.12196 * 180.02562 * 17 16 15 19 19 C 1.38003 * 119.86693 * 179.70371 * 18 17 16 20 20 C 1.38338 * 120.12767 * 0.57222 * 19 18 17 21 21 C 1.38333 * 120.25495 * 359.72030 * 20 19 18 22 22 C 1.38003 * 120.12474 * 359.97438 * 21 20 19 23 23 C 1.39811 * 121.42549 * 0.55816 * 16 15 14 24 24 C 1.39071 * 119.26583 * 359.46051 * 23 16 15 25 25 C 1.47768 * 121.03180 * 180.23580 * 24 23 16 26 26 O 1.21467 * 119.99664 * 172.83910 * 25 24 23 27 27 O 1.34720 * 120.00208 * 352.83687 * 25 24 23 28 28 C 1.40988 * 106.34102 * 0.02562 * 14 4 3 29 29 H 1.09000 * 109.46864 * 254.22491 * 1 2 3 30 30 H 1.08998 * 109.46533 * 14.21979 * 1 2 3 31 31 H 1.08996 * 109.47011 * 134.21658 * 1 2 3 32 32 H 1.09001 * 109.47563 * 210.03114 * 5 4 3 33 33 H 1.09002 * 109.47217 * 330.02913 * 5 4 3 34 34 H 0.97001 * 119.99949 * 179.97438 * 9 8 6 35 35 H 1.08001 * 120.06527 * 359.97438 * 18 17 16 36 36 H 1.08000 * 119.93780 * 180.31697 * 19 18 17 37 37 H 1.08000 * 119.87279 * 179.70410 * 20 19 18 38 38 H 1.07995 * 119.93679 * 180.02562 * 21 20 19 39 39 H 1.08003 * 120.06321 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.36669 * 179.74106 * 23 16 15 41 41 H 0.96699 * 116.99947 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2671 1.0579 0.0000 4 7 3.6132 0.6736 -0.0006 5 6 4.7653 1.5784 -0.0002 6 6 5.1612 1.8872 1.4207 7 1 4.6099 1.4525 2.2414 8 6 6.2277 2.7237 1.6729 9 7 6.8993 3.2526 0.6735 10 14 6.7179 3.1070 3.4343 11 1 7.0771 1.8470 4.1335 12 1 7.8859 4.0240 3.4346 13 1 5.5802 3.7549 4.1349 14 6 3.6664 -0.6968 -0.0015 15 7 4.6644 -1.5671 -0.0028 16 6 4.4533 -2.8726 0.0018 17 6 5.6144 -3.7951 0.0062 18 6 5.4120 -5.1744 0.0106 19 6 6.4963 -6.0281 0.0084 20 6 7.7820 -5.5176 0.0139 21 6 7.9888 -4.1498 0.0157 22 6 6.9122 -3.2865 0.0115 23 6 3.1593 -3.4018 -0.0033 24 6 2.0708 -2.5362 -0.0020 25 6 0.6864 -3.0532 -0.0021 26 8 -0.2476 -2.2879 0.1302 27 8 0.4603 -4.3731 -0.1488 28 6 2.3299 -1.1456 -0.0021 29 1 -0.3633 -0.2794 0.9890 30 1 -0.3632 0.9962 -0.2524 31 1 -0.3633 -0.7166 -0.7365 32 1 5.6005 1.1035 -0.5151 33 1 4.5011 2.5033 -0.5129 34 1 7.6495 3.8414 0.8510 35 1 4.4086 -5.5740 0.0112 36 1 6.3408 -7.0968 0.0067 37 1 8.6275 -6.1895 0.0170 38 1 8.9947 -3.7568 0.0195 39 1 7.0748 -2.2188 0.0125 40 1 3.0066 -4.4710 -0.0035 41 1 -0.4620 -4.6638 -0.1428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012396267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:50 Heat of formation + Delta-G solvation = 49.421652 kcal Electronic energy + Delta-G solvation = -28117.885071 eV Core-core repulsion = 24157.738767 eV Total energy + Delta-G solvation = -3960.146304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55506 -39.99880 -39.34016 -37.52365 -36.31221 -34.25855 -32.89797 -32.16818 -31.63509 -30.78201 -29.04020 -28.65448 -26.18549 -25.45581 -23.89757 -22.99650 -22.44833 -21.41285 -20.95487 -19.25247 -18.24429 -17.47264 -17.07318 -16.82386 -16.48572 -16.39926 -15.91798 -15.14009 -14.86174 -14.73919 -14.44233 -14.14410 -13.92821 -13.47110 -13.42429 -13.34695 -13.00004 -12.82740 -12.46241 -12.42953 -12.25929 -11.84030 -11.60760 -11.39872 -11.33544 -11.02731 -11.01715 -10.85173 -10.46761 -10.44389 -10.27572 -10.21074 -9.65725 -9.32415 -9.22117 -8.92286 -8.62637 -8.03562 -7.72661 -6.24530 -4.31686 0.28279 0.88683 1.43771 1.84615 2.38032 2.74106 2.88095 3.02781 3.24585 3.27682 3.32537 3.70840 4.17414 4.19241 4.31911 4.54049 4.72941 4.87618 4.93223 4.96635 4.99534 5.11221 5.16549 5.33073 5.48892 5.50409 5.55685 5.68727 5.83197 5.90500 6.03966 6.10692 6.12593 6.18736 6.26839 6.41193 6.50031 6.57994 6.61759 6.78276 6.97431 6.98586 7.10357 7.45494 7.71509 7.77769 7.87069 8.00583 8.32811 8.71193 9.33607 10.83191 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.007302 B = 0.005135 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3833.658398 B = 5451.857318 C = 8723.194369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.078 3.922 3 N -0.222 5.222 4 N -0.337 5.337 5 C 0.266 3.734 6 C -0.536 4.536 7 H 0.061 0.939 8 C 0.068 3.932 9 N -0.891 5.891 10 Si 0.906 3.094 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.274 1.274 14 C 0.317 3.683 15 N -0.451 5.451 16 C 0.213 3.787 17 C -0.046 4.046 18 C -0.099 4.099 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.126 4.126 22 C -0.072 4.072 23 C -0.153 4.153 24 C -0.010 4.010 25 C 0.524 3.476 26 O -0.490 6.490 27 O -0.511 6.511 28 C -0.183 4.183 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.269 0.731 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.288 -19.555 -3.140 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 N -0.040 5.040 4 N -0.123 5.123 5 C 0.149 3.851 6 C -0.574 4.574 7 H 0.080 0.920 8 C -0.135 4.135 9 N -0.528 5.528 10 Si 0.733 3.267 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.200 1.200 14 C 0.074 3.926 15 N -0.164 5.164 16 C 0.062 3.938 17 C -0.047 4.047 18 C -0.118 4.118 19 C -0.146 4.146 20 C -0.130 4.130 21 C -0.144 4.144 22 C -0.091 4.091 23 C -0.175 4.175 24 C -0.022 4.022 25 C 0.369 3.631 26 O -0.378 6.378 27 O -0.323 6.323 28 C -0.195 4.195 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.159 0.841 40 H 0.169 0.831 41 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -5.008 -17.145 -3.166 18.140 hybrid contribution -0.851 -0.950 1.020 1.633 sum -5.859 -18.095 -2.146 19.141 Atomic orbital electron populations 1.20472 0.85310 1.01688 1.04004 1.22271 0.97475 0.88306 1.01447 1.76919 0.87381 1.22837 1.16907 1.49619 1.05078 1.01392 1.56237 1.19807 0.78176 0.87907 0.99207 1.21219 1.15243 1.29858 0.91102 0.92046 1.24880 0.95476 0.95041 0.98113 1.69905 1.20456 1.31431 1.31050 0.86419 0.78110 0.78418 0.83771 1.19961 1.20840 1.19961 1.18822 0.88372 0.87283 0.98155 1.66276 1.34798 1.01465 1.13848 1.19445 0.91448 0.88068 0.94806 1.18461 0.91651 0.91667 1.02877 1.21220 0.99452 0.91882 0.99235 1.21003 0.92448 0.99526 1.01661 1.21267 0.97057 0.95455 0.99205 1.21192 0.99169 0.93332 1.00690 1.21524 0.91118 1.01465 0.94995 1.22013 0.91394 1.00776 1.03356 1.18518 0.90014 0.91297 1.02386 1.20869 0.89765 0.79789 0.72711 1.90977 1.45689 1.56332 1.44818 1.84554 1.36877 1.25844 1.85064 1.19222 0.94758 0.92880 1.12596 0.90351 0.92211 0.88838 0.92268 0.92653 0.92172 0.85397 0.85826 0.86126 0.85671 0.84075 0.83095 0.72743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 8.35 36.01 0.30 -0.57 16 2 C 0.08 1.52 7.22 -82.19 -0.59 0.92 16 3 N -0.22 -5.03 12.44 33.82 0.42 -4.61 16 4 N -0.34 -8.14 3.65 -61.58 -0.22 -8.37 16 5 C 0.27 7.03 6.20 -5.20 -0.03 7.00 16 6 C -0.54 -15.17 9.39 -34.44 -0.32 -15.49 16 7 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 8 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 9 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 10 Si 0.91 21.58 29.54 -169.99 -5.02 16.55 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.32 6.99 8.00 -156.08 -1.25 5.74 16 15 N -0.45 -9.25 9.38 -8.90 -0.08 -9.33 16 16 C 0.21 3.53 6.73 -82.96 -0.56 2.98 16 17 C -0.05 -0.65 5.88 -104.90 -0.62 -1.27 16 18 C -0.10 -1.09 9.41 -39.23 -0.37 -1.46 16 19 C -0.13 -1.24 10.03 -39.63 -0.40 -1.63 16 20 C -0.11 -1.12 10.04 -39.51 -0.40 -1.51 16 21 C -0.13 -1.50 10.03 -39.63 -0.40 -1.90 16 22 C -0.07 -1.06 9.57 -39.24 -0.38 -1.43 16 23 C -0.15 -2.16 9.02 -38.68 -0.35 -2.51 16 24 C -0.01 -0.16 5.93 -104.47 -0.62 -0.78 16 25 C 0.52 6.64 8.27 34.63 0.29 6.93 16 26 O -0.49 -6.81 11.78 -19.24 -0.23 -7.04 16 27 O -0.51 -4.33 12.80 -40.55 -0.52 -4.85 16 28 C -0.18 -3.53 6.01 -106.56 -0.64 -4.17 16 29 H 0.08 1.18 7.46 -51.93 -0.39 0.79 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.36 5.83 -51.98 -0.30 1.06 16 32 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.13 1.10 6.14 -52.49 -0.32 0.77 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.14 2.35 7.52 -52.48 -0.39 1.96 16 40 H 0.15 1.58 5.80 -52.49 -0.30 1.27 16 41 H 0.41 1.45 9.11 45.56 0.42 1.87 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -32.86 356.31 -9.35 -42.21 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -3.38 Total: 2.14 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -6.43 Total: -7.35 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.85 Total: -47.03 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.75 Total: -11.89 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.86 -9.35 -42.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012396267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.632 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds