Wall clock time and date at job start Tue Mar 31 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35950 * 116.99451 * 2 1 4 4 C 1.38045 * 120.00170 * 359.72607 * 3 2 1 5 5 C 1.40063 * 119.83724 * 180.27860 * 4 3 2 6 6 C 1.46766 * 120.09155 * 179.97438 * 5 4 3 7 7 C 1.35810 * 119.99804 * 338.02863 * 6 5 4 8 8 S 1.77492 * 127.97001 * 352.26770 * 7 6 5 9 9 C 1.77225 * 94.57172 * 179.97438 * 8 7 6 10 10 S 1.71205 * 126.55240 * 180.08235 * 9 8 7 11 11 N 1.33794 * 106.89862 * 0.35650 * 9 8 7 12 12 C 1.32267 * 119.51490 * 359.72976 * 11 9 8 13 13 O 1.21711 * 122.52205 * 180.02562 * 12 11 9 14 14 C 1.40129 * 119.82061 * 359.97438 * 5 4 3 15 15 C 1.37624 * 119.99213 * 0.02562 * 14 5 4 16 16 C 1.39074 * 120.16909 * 359.97438 * 15 14 5 17 17 O 1.35609 * 119.91146 * 179.97438 * 16 15 14 18 18 C 1.34763 * 117.00223 * 353.94270 * 17 16 15 19 19 H 1.07999 * 119.99674 * 5.09246 * 18 17 16 20 20 C 1.38679 * 120.00022 * 185.10374 * 18 17 16 21 21 N 1.31540 * 119.99669 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00007 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46933 * 90.00712 * 22 20 18 24 24 H 1.48502 * 109.46987 * 210.00436 * 22 20 18 25 25 H 1.48500 * 109.47482 * 330.00624 * 22 20 18 26 26 H 1.08998 * 109.46984 * 299.99622 * 1 2 3 27 27 H 1.08999 * 109.47012 * 59.99786 * 1 2 3 28 28 H 1.08997 * 109.46750 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.08168 * 0.27499 * 4 3 2 30 30 H 1.08003 * 119.99989 * 158.02739 * 6 5 4 31 31 H 0.96999 * 120.24456 * 179.71584 * 11 9 8 32 32 H 1.08003 * 120.00391 * 180.02562 * 14 5 4 33 33 H 1.07997 * 119.91232 * 179.97438 * 15 14 5 34 34 H 0.96996 * 119.99508 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3691 -0.0057 5 6 1.9336 3.6152 -0.0116 6 6 1.1397 4.8496 -0.0183 7 6 -0.1448 4.8284 -0.4590 8 16 -1.0092 3.4897 -1.2405 9 6 -2.5261 4.3878 -1.4221 10 16 -3.9773 3.8075 -2.1211 11 7 -2.3188 5.6081 -0.9141 12 6 -1.1356 5.9099 -0.4057 13 8 -0.8874 7.0020 0.0707 14 6 3.3334 3.6803 -0.0111 15 6 4.0759 2.5216 -0.0054 16 6 3.4407 1.2844 0.0004 17 8 4.1775 0.1460 0.0055 18 6 5.5123 0.2805 -0.1221 19 1 5.9566 1.2647 -0.1396 20 6 6.3154 -0.8449 -0.2312 21 7 7.6182 -0.7135 -0.3562 22 14 5.5469 -2.5472 -0.2005 23 1 5.2060 -2.9613 -1.5852 24 1 6.5107 -3.5149 0.3825 25 1 4.3131 -2.5186 0.6255 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2156 2.3140 -0.0057 30 1 1.5768 5.7747 0.3273 31 1 -3.0309 6.2667 -0.9187 32 1 3.8294 4.6397 -0.0152 33 1 5.1547 2.5732 -0.0055 34 1 8.1799 -1.5007 -0.4322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012419233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:27 Heat of formation + Delta-G solvation = -11.943976 kcal Electronic energy + Delta-G solvation = -23315.180684 eV Core-core repulsion = 19626.611249 eV Total energy + Delta-G solvation = -3688.569435 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.027 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33317 -40.21911 -38.23149 -37.21078 -36.93122 -33.64574 -32.86800 -30.06709 -29.38867 -27.42533 -26.93551 -26.12871 -24.69245 -22.32779 -21.66869 -20.20463 -19.35912 -18.69447 -18.19537 -18.04313 -16.85022 -16.40766 -16.27338 -15.85250 -15.59836 -15.28561 -14.97662 -14.60679 -14.43780 -14.16474 -13.71606 -13.42087 -12.95292 -12.74507 -12.52090 -12.36093 -12.14162 -12.06057 -11.67520 -11.45378 -11.36619 -11.12412 -11.02236 -10.60175 -10.53690 -10.50808 -9.97886 -9.45495 -9.27451 -8.52265 -8.18902 -8.08405 -7.32302 -6.96096 -4.47672 -0.65859 0.46907 0.51571 1.38031 1.48103 1.74321 1.89131 2.44449 2.57764 2.97641 3.02768 3.17542 3.56034 3.77376 3.87399 3.97296 4.18211 4.62127 4.72940 5.05399 5.15246 5.23094 5.32890 5.34144 5.41464 5.59343 5.63045 5.74721 5.79505 5.99590 6.03960 6.37071 6.50566 6.72928 6.97635 7.10038 7.13961 7.42178 7.69112 8.33711 8.93865 10.06905 Molecular weight = 337.03amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.003081 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.555526 B = 9086.230888 C =10250.367648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.065 3.935 4 C -0.139 4.139 5 C -0.195 4.195 6 C 0.148 3.852 7 C -0.341 4.341 8 S 0.148 5.852 9 C 0.256 3.744 10 S -0.428 6.428 11 N -0.615 5.615 12 C 0.550 3.450 13 O -0.482 6.482 14 C -0.030 4.030 15 C -0.216 4.216 16 C 0.160 3.840 17 O -0.165 6.165 18 C -0.377 4.377 19 H 0.118 0.882 20 C 0.068 3.932 21 N -0.841 5.841 22 Si 0.908 3.092 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.250 1.250 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.153 0.847 31 H 0.427 0.573 32 H 0.126 0.874 33 H 0.149 0.851 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.748 6.580 0.736 12.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.020 3.980 4 C -0.161 4.161 5 C -0.197 4.197 6 C 0.122 3.878 7 C -0.459 4.459 8 S 0.387 5.613 9 C -0.096 4.096 10 S -0.294 6.294 11 N -0.257 5.257 12 C 0.338 3.662 13 O -0.359 6.359 14 C -0.048 4.048 15 C -0.235 4.235 16 C 0.102 3.898 17 O -0.065 6.065 18 C -0.451 4.451 19 H 0.135 0.865 20 C -0.141 4.141 21 N -0.473 5.473 22 Si 0.731 3.269 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.174 1.174 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.150 0.850 30 H 0.170 0.830 31 H 0.268 0.732 32 H 0.144 0.856 33 H 0.166 0.834 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.788 5.004 0.233 11.894 hybrid contribution -0.301 1.490 0.713 1.679 sum -11.089 6.495 0.946 12.886 Atomic orbital electron populations 1.23058 0.79246 1.03747 1.01015 1.86186 1.20343 1.25889 1.89501 1.17937 0.89085 0.84709 1.06296 1.21004 0.98446 0.91097 1.05545 1.18095 0.93186 0.90600 1.17807 1.21993 0.88082 0.97427 0.80289 1.23433 1.00628 0.98191 1.23632 1.86416 0.99131 1.13698 1.62049 1.28940 1.05468 0.88835 0.86384 1.93048 1.14609 1.75502 1.46286 1.43458 1.16049 1.14195 1.52018 1.18004 0.81737 0.88472 0.77976 1.90927 1.79151 1.23074 1.42698 1.20982 0.91597 0.98134 0.94134 1.20957 1.01465 0.90290 1.10801 1.18673 0.87615 0.86845 0.96679 1.83567 1.20834 1.28297 1.73755 1.21127 0.77025 0.97652 1.49281 0.86481 1.24657 0.94585 1.00409 0.94473 1.69615 1.03415 1.32990 1.41305 0.86104 0.80126 0.80499 0.80158 1.19087 1.20123 1.17390 0.93040 0.92856 0.88354 0.84997 0.82999 0.73162 0.85605 0.83377 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -5.34 10.28 -34.20 -0.35 -5.69 16 3 C 0.07 1.15 6.70 -39.13 -0.26 0.89 16 4 C -0.14 -2.06 7.58 -38.97 -0.30 -2.36 16 5 C -0.19 -2.65 5.79 -105.06 -0.61 -3.26 16 6 C 0.15 1.69 9.82 -37.01 -0.36 1.33 16 7 C -0.34 -4.11 6.33 -37.01 -0.23 -4.35 16 8 S 0.15 1.77 19.08 -107.50 -2.05 -0.28 16 9 C 0.26 3.11 7.98 53.62 0.43 3.54 16 10 S -0.43 -6.04 31.19 -107.50 -3.35 -9.39 16 11 N -0.61 -6.73 5.14 -13.26 -0.07 -6.80 16 12 C 0.55 6.78 7.99 -13.92 -0.11 6.67 16 13 O -0.48 -6.91 17.93 5.18 0.09 -6.82 16 14 C -0.03 -0.41 9.78 -39.10 -0.38 -0.79 16 15 C -0.22 -3.70 9.14 -39.50 -0.36 -4.06 16 16 C 0.16 3.16 6.67 -38.75 -0.26 2.90 16 17 O -0.17 -3.78 8.35 -13.95 -0.12 -3.90 16 18 C -0.38 -9.04 9.94 30.90 0.31 -8.73 16 19 H 0.12 2.78 5.42 -52.49 -0.28 2.49 16 20 C 0.07 1.65 5.49 -17.51 -0.10 1.55 16 21 N -0.84 -20.97 13.96 55.48 0.77 -20.19 16 22 Si 0.91 19.05 28.62 -169.99 -4.86 14.18 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.25 -5.38 7.11 56.52 0.40 -4.98 16 26 H 0.05 0.56 7.67 -51.93 -0.40 0.17 16 27 H 0.05 0.60 7.65 -51.93 -0.40 0.21 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.13 1.74 2.95 -30.08 -0.09 1.65 16 30 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 31 H 0.43 3.86 8.91 -40.82 -0.36 3.49 16 32 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.15 2.59 5.62 -52.49 -0.29 2.30 16 34 H 0.29 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -27.08 329.67 -8.45 -35.52 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -2.23 Total: 3.78 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -1.25 Total: -5.38 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.71 Total: -27.00 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.38 Total: -16.41 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.86 Total: 14.18 kcal Atomic # 16 Polarization: -4.27 SS G_CDS: -5.40 Total: -9.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.08 -8.45 -35.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012419233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.578 kcal (2) G-P(sol) polarization free energy of solvation -27.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds