Wall clock time and date at job start Tue Mar 31 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35947 * 116.99876 * 2 1 4 4 C 1.37986 * 119.99491 * 359.72614 * 3 2 1 5 5 C 1.40188 * 119.82075 * 179.77051 * 4 3 2 6 6 C 1.46518 * 120.09637 * 180.27103 * 5 4 3 7 7 C 1.36563 * 120.00358 * 143.75741 * 6 5 4 8 8 C 1.47266 * 127.48962 * 351.63793 * 7 6 5 9 9 O 1.21761 * 126.01759 * 359.97438 * 8 7 6 10 10 N 1.34387 * 107.95554 * 179.81723 * 8 7 6 11 11 C 1.38989 * 111.40679 * 0.46038 * 10 8 7 12 12 C 1.39065 * 131.69755 * 179.72859 * 11 10 8 13 13 C 1.38012 * 120.12776 * 179.97438 * 12 11 10 14 14 C 1.38501 * 120.62834 * 359.97438 * 13 12 11 15 15 C 1.38033 * 120.08010 * 359.97438 * 14 13 12 16 16 C 1.39087 * 119.72973 * 0.02680 * 15 14 13 17 17 C 1.40240 * 119.81159 * 0.50296 * 5 4 3 18 18 C 1.37562 * 119.97984 * 359.74956 * 17 5 4 19 19 C 1.39126 * 120.17945 * 359.97438 * 18 17 5 20 20 O 1.35568 * 119.90422 * 179.97438 * 19 18 17 21 21 C 1.34740 * 116.99890 * 354.37804 * 20 19 18 22 22 H 1.08002 * 120.00205 * 5.07334 * 21 20 19 23 23 C 1.38728 * 119.99851 * 185.07716 * 21 20 19 24 24 N 1.31496 * 120.00468 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99864 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47135 * 89.99949 * 25 23 21 27 27 H 1.48493 * 109.47212 * 209.99749 * 25 23 21 28 28 H 1.48500 * 109.47222 * 330.00115 * 25 23 21 29 29 H 1.09000 * 109.47344 * 299.99921 * 1 2 3 30 30 H 1.09005 * 109.47211 * 59.99934 * 1 2 3 31 31 H 1.09001 * 109.47462 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.09336 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.00100 * 323.76194 * 6 5 4 34 34 H 0.97000 * 124.29073 * 180.13661 * 10 8 7 35 35 H 1.08004 * 119.93799 * 359.97301 * 12 11 10 36 36 H 1.07994 * 119.68845 * 179.97438 * 13 12 11 37 37 H 1.07994 * 119.95977 * 179.97438 * 14 13 12 38 38 H 1.08007 * 120.13305 * 180.02562 * 15 14 13 39 39 H 1.08003 * 120.01201 * 179.72989 * 17 5 4 40 40 H 1.07994 * 119.90784 * 180.02562 * 18 17 5 41 41 H 0.96996 * 120.00801 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2945 2.3685 -0.0057 5 6 1.9347 3.6156 -0.0008 6 6 1.1425 4.8482 -0.0008 7 6 1.5732 5.9368 0.7022 8 6 2.7033 6.0059 1.6439 9 8 3.4407 5.0853 1.9462 10 7 2.7794 7.2647 2.1081 11 6 1.7817 8.0664 1.5662 12 6 1.4700 9.4087 1.7532 13 6 0.4059 9.9732 1.0797 14 6 -0.3624 9.2147 0.2120 15 6 -0.0678 7.8810 0.0127 16 6 1.0027 7.3029 0.6868 17 6 3.3356 3.6802 -0.0008 18 6 4.0772 2.5216 -0.0004 19 6 3.4412 1.2842 0.0005 20 8 4.1775 0.1459 0.0004 21 6 5.5128 0.2811 -0.1183 22 1 5.9574 1.2653 -0.1253 23 6 6.3166 -0.8439 -0.2316 24 7 5.7753 -2.0423 -0.2227 25 14 8.1678 -0.6564 -0.3969 26 1 8.7876 -0.6547 0.9526 27 1 8.7112 -1.7884 -1.1896 28 1 8.4763 0.6229 -1.0848 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2159 2.3136 -0.0098 33 1 0.2178 4.8957 -0.5568 34 1 3.4433 7.5733 2.7444 35 1 2.0619 10.0107 2.4269 36 1 0.1699 11.0162 1.2305 37 1 -1.1929 9.6673 -0.3091 38 1 -0.6660 7.2888 -0.6641 39 1 3.8322 4.6393 -0.0015 40 1 5.1559 2.5727 0.0000 41 1 6.3372 -2.8289 -0.3023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012469429.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:00 Heat of formation + Delta-G solvation = -2.133676 kcal Electronic energy + Delta-G solvation = -27560.711416 eV Core-core repulsion = 23566.036755 eV Total energy + Delta-G solvation = -3994.674662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.115 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34755 -39.61513 -38.25018 -37.63342 -36.38650 -35.46112 -33.39875 -32.40422 -30.73589 -29.64538 -29.28069 -28.11284 -26.56339 -25.63819 -24.59920 -22.56344 -21.80650 -21.46501 -21.29903 -19.03885 -18.16354 -17.82323 -17.50852 -16.63049 -16.21814 -15.81918 -15.38479 -15.30849 -15.15372 -14.65502 -14.50523 -14.18149 -14.02978 -13.93785 -13.67432 -13.53703 -13.42406 -12.92484 -12.76754 -12.41346 -12.14304 -11.77429 -11.62501 -11.50615 -11.22328 -11.16135 -10.99712 -10.79483 -10.67117 -10.58572 -10.46533 -10.08382 -9.62580 -9.50449 -8.99408 -8.57033 -7.96885 -7.80311 -6.78695 -6.59905 -4.08223 0.38536 1.19235 1.66478 2.25717 2.49096 3.08112 3.08522 3.09412 3.14093 3.45545 3.76494 3.86493 3.99698 4.38697 4.47627 4.56923 4.69989 4.85661 4.94802 5.04365 5.13353 5.19644 5.36270 5.44372 5.51224 5.55545 5.57884 5.73486 5.78976 5.85007 5.93332 6.07894 6.13783 6.28095 6.33968 6.38205 6.43035 6.56314 6.63625 6.87481 6.89412 7.02869 7.08980 7.16544 7.36457 7.56627 7.82399 8.14353 8.23457 8.83536 9.53183 10.55778 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.002864 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.334384 B = 9774.598314 C =11212.021807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.304 6.304 3 C 0.043 3.957 4 C -0.129 4.129 5 C -0.191 4.191 6 C 0.086 3.914 7 C -0.228 4.228 8 C 0.552 3.448 9 O -0.488 6.488 10 N -0.660 5.660 11 C 0.139 3.861 12 C -0.141 4.141 13 C -0.097 4.097 14 C -0.144 4.144 15 C -0.076 4.076 16 C -0.083 4.083 17 C -0.001 4.001 18 C -0.231 4.231 19 C 0.157 3.843 20 O -0.145 6.145 21 C -0.386 4.386 22 H 0.099 0.901 23 C 0.041 3.959 24 N -0.844 5.844 25 Si 0.945 3.055 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.264 1.264 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.412 0.588 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.419 19.036 0.416 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.218 6.218 3 C -0.002 4.002 4 C -0.149 4.149 5 C -0.192 4.192 6 C 0.067 3.933 7 C -0.231 4.231 8 C 0.344 3.656 9 O -0.363 6.363 10 N -0.303 5.303 11 C 0.041 3.959 12 C -0.162 4.162 13 C -0.116 4.116 14 C -0.163 4.163 15 C -0.095 4.095 16 C -0.086 4.086 17 C -0.020 4.020 18 C -0.250 4.250 19 C 0.100 3.900 20 O -0.045 6.045 21 C -0.461 4.461 22 H 0.116 0.884 23 C -0.166 4.166 24 N -0.476 5.476 25 Si 0.769 3.231 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.189 1.189 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.250 0.750 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.153 0.847 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.862 17.653 0.547 20.735 hybrid contribution 0.933 0.618 0.412 1.192 sum -9.929 18.271 0.959 20.817 Atomic orbital electron populations 1.22888 0.80397 1.02947 1.00243 1.86229 1.19386 1.26251 1.89951 1.17936 0.89287 0.84501 1.08484 1.20756 0.98245 0.90741 1.05139 1.18030 0.92993 0.91005 1.17186 1.22128 0.94465 0.89617 0.87089 1.20356 1.02514 0.93791 1.06477 1.18414 0.84495 0.81200 0.81477 1.91009 1.45334 1.38346 1.61601 1.43424 1.31000 1.10724 1.45110 1.18272 0.90100 0.92217 0.95358 1.20217 1.00431 0.91754 1.03844 1.20817 0.94697 0.99648 0.96417 1.20923 1.00994 0.93834 1.00553 1.20521 0.95453 0.94864 0.98621 1.18995 0.97279 0.92931 0.99436 1.20923 0.91966 0.97394 0.91682 1.20764 1.00657 0.90629 1.12971 1.18938 0.88235 0.87510 0.95330 1.83951 1.19781 1.26126 1.74629 1.21583 0.78427 0.95183 1.50950 0.88394 1.25427 1.00953 0.94112 0.96105 1.70037 1.36705 0.97832 1.42985 0.85641 0.79833 0.78708 0.78925 1.19594 1.20029 1.18853 0.93604 0.93548 0.89079 0.86041 0.85306 0.75042 0.85984 0.85689 0.85758 0.85708 0.86849 0.84723 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.30 -6.62 10.28 -34.19 -0.35 -6.97 16 3 C 0.04 0.95 6.70 -39.13 -0.26 0.69 16 4 C -0.13 -2.38 8.78 -38.94 -0.34 -2.72 16 5 C -0.19 -3.48 5.47 -105.08 -0.57 -4.06 16 6 C 0.09 1.25 9.85 -36.85 -0.36 0.89 16 7 C -0.23 -3.39 6.01 -102.81 -0.62 -4.01 16 8 C 0.55 9.07 7.62 -12.77 -0.10 8.97 16 9 O -0.49 -9.73 13.88 5.13 0.07 -9.66 16 10 N -0.66 -8.51 5.92 -10.81 -0.06 -8.58 16 11 C 0.14 1.67 7.17 -83.60 -0.60 1.07 16 12 C -0.14 -1.32 10.06 -39.36 -0.40 -1.72 16 13 C -0.10 -0.79 10.01 -39.57 -0.40 -1.19 16 14 C -0.14 -1.21 10.04 -39.56 -0.40 -1.61 16 15 C -0.08 -0.76 10.09 -39.34 -0.40 -1.16 16 16 C -0.08 -1.05 6.29 -104.85 -0.66 -1.71 16 17 C 0.00 -0.02 6.99 -39.08 -0.27 -0.30 16 18 C -0.23 -5.29 9.14 -39.50 -0.36 -5.65 16 19 C 0.16 3.95 6.67 -38.71 -0.26 3.69 16 20 O -0.14 -4.20 9.52 -13.76 -0.13 -4.33 16 21 C -0.39 -10.77 9.48 30.91 0.29 -10.48 16 22 H 0.10 2.53 5.18 -52.49 -0.27 2.25 16 23 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 24 N -0.84 -24.43 13.67 55.48 0.76 -23.67 16 25 Si 0.95 20.23 29.55 -169.99 -5.02 15.20 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 28 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 29 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 30 H 0.05 0.59 7.65 -51.93 -0.40 0.20 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.12 1.79 6.28 -52.49 -0.33 1.46 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.41 4.26 8.96 -40.82 -0.37 3.89 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.11 2.21 6.03 -52.48 -0.32 1.89 16 40 H 0.14 3.07 5.61 -52.49 -0.29 2.77 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -33.99 353.94 -8.26 -42.24 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.05 Total: 7.26 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -4.81 Total: -16.83 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.69 Total: -32.25 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.41 Total: -20.96 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.99 -8.26 -42.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012469429.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.110 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds