Wall clock time and date at job start Tue Mar 31 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38286 * 119.93316 * 2 1 4 4 C 1.38112 * 120.06442 * 179.97438 * 3 2 1 5 5 C 1.38851 * 119.93411 * 0.02562 * 4 3 2 6 6 N 1.40137 * 120.06688 * 179.97438 * 5 4 3 7 7 C 1.37209 * 126.41561 * 310.33075 * 6 5 4 8 8 C 1.35950 * 106.85830 * 180.13290 * 7 6 5 9 9 C 1.48327 * 125.95814 * 179.84559 * 8 7 6 10 10 C 1.39388 * 120.12384 * 359.44056 * 9 8 7 11 11 C 1.37997 * 119.86923 * 180.24987 * 10 9 8 12 12 C 1.38328 * 120.12822 * 0.02903 * 11 10 9 13 13 C 1.38333 * 120.25588 * 359.97438 * 12 11 10 14 14 C 1.38001 * 120.12161 * 359.97438 * 13 12 11 15 15 N 1.34786 * 108.08108 * 359.58599 * 8 7 6 16 16 C 1.31271 * 109.26003 * 0.26048 * 15 8 7 17 17 S 1.76203 * 125.68567 * 179.97438 * 16 15 8 18 18 C 1.76202 * 99.99746 * 0.02562 * 17 16 15 19 19 H 1.07996 * 120.00346 * 359.97438 * 18 17 16 20 20 C 1.38630 * 119.99502 * 180.02562 * 18 17 16 21 21 N 1.31662 * 119.99711 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00287 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47682 * 89.99843 * 22 20 18 24 24 H 1.48501 * 109.47197 * 210.00360 * 22 20 18 25 25 H 1.48505 * 109.47196 * 329.99996 * 22 20 18 26 26 C 1.38843 * 119.86829 * 0.25487 * 5 4 3 27 27 C 1.38119 * 119.92807 * 359.44364 * 26 5 4 28 28 H 1.09001 * 109.46917 * 89.99497 * 1 2 3 29 29 H 1.08990 * 109.47102 * 210.00230 * 1 2 3 30 30 H 1.09006 * 109.46663 * 329.99958 * 1 2 3 31 31 H 1.07990 * 119.96729 * 0.02562 * 3 2 1 32 32 H 1.08005 * 120.03656 * 180.02562 * 4 3 2 33 33 H 1.08010 * 126.57075 * 359.97438 * 7 6 5 34 34 H 1.07995 * 120.06152 * 0.30198 * 10 9 8 35 35 H 1.08003 * 119.93458 * 180.02562 * 11 10 9 36 36 H 1.08006 * 119.87433 * 179.97438 * 12 11 10 37 37 H 1.07993 * 119.93831 * 179.97438 * 13 12 11 38 38 H 1.08005 * 120.06490 * 180.02562 * 14 13 12 39 39 H 0.96999 * 120.00048 * 179.97438 * 21 20 18 40 40 H 1.07996 * 120.03814 * 179.75137 * 26 5 4 41 41 H 1.07996 * 119.97015 * 180.31954 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5782 1.2016 0.0005 5 6 4.2738 -0.0001 0.0005 6 7 5.6751 -0.0002 0.0005 7 6 6.4897 0.7144 -0.8412 8 6 7.7708 0.4176 -0.4962 9 6 8.9934 0.9577 -1.1392 10 6 8.8874 1.8472 -2.2072 11 6 10.0284 2.3425 -2.8049 12 6 11.2754 1.9574 -2.3465 13 6 11.3867 1.0749 -1.2871 14 6 10.2526 0.5740 -0.6810 15 7 7.7360 -0.4488 0.5358 16 6 6.4860 -0.7068 0.8426 17 16 5.9444 -1.7855 2.1264 18 6 7.5017 -2.3151 2.7582 19 1 8.4165 -1.9460 2.3188 20 6 7.5524 -3.2065 3.8187 21 7 8.7159 -3.6020 4.2912 22 14 5.9700 -3.8467 4.5773 23 1 5.5522 -5.0880 3.8774 24 1 6.1941 -4.1408 6.0155 25 1 4.9055 -2.8201 4.4420 26 6 3.5782 -1.2017 -0.0054 27 6 2.1970 -1.1985 0.0004 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6555 2.1327 0.0004 32 1 4.1166 2.1378 0.0010 33 1 6.1737 1.3826 -1.6288 34 1 7.9143 2.1488 -2.5655 35 1 9.9475 3.0321 -3.6321 36 1 12.1657 2.3473 -2.8176 37 1 12.3628 0.7774 -0.9337 38 1 10.3405 -0.1147 0.1464 39 1 8.7515 -4.2254 5.0334 40 1 4.1165 -2.1380 -0.0094 41 1 1.6553 -2.1327 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012523643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:46 Heat of formation + Delta-G solvation = 104.383014 kcal Electronic energy + Delta-G solvation = -24662.345021 eV Core-core repulsion = 21212.760803 eV Total energy + Delta-G solvation = -3449.584218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.099 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.60800 -39.27298 -38.53880 -34.46380 -32.55416 -31.78054 -31.16945 -30.94935 -30.49700 -28.16830 -26.34663 -25.75373 -23.26778 -22.94543 -22.39685 -21.80658 -20.49031 -19.76168 -18.59739 -17.17326 -16.46860 -15.79784 -15.50459 -15.26750 -15.07988 -14.98148 -14.42684 -14.31207 -14.07349 -13.88772 -13.55402 -13.36761 -13.13718 -13.12347 -12.90562 -12.66003 -12.36818 -12.14901 -11.72514 -11.65027 -11.27012 -11.18539 -11.07712 -10.97509 -10.83014 -10.10503 -9.99752 -9.58799 -9.39699 -9.12029 -8.97752 -8.91893 -8.71152 -8.44405 -7.90286 -6.81284 -6.36237 -4.13917 0.95834 1.28127 1.37623 1.65045 2.33130 2.51894 3.10931 3.16294 3.24182 3.37444 3.52010 3.62094 4.13905 4.32379 4.46726 4.69806 4.73423 4.85173 4.93551 5.01911 5.05164 5.13802 5.15524 5.23862 5.27292 5.37478 5.40645 5.56002 5.58895 5.62211 5.73952 5.83420 5.89800 5.97543 6.11659 6.18858 6.22310 6.32998 6.45865 6.57031 6.64852 6.73537 6.74918 6.91925 7.11782 7.26414 7.55054 7.89858 8.51351 8.71907 9.03623 10.72967 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.007066 B = 0.005010 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3961.414761 B = 5587.684857 C = 9365.544952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.108 4.108 4 C -0.113 4.113 5 C 0.128 3.872 6 N -0.415 5.415 7 C -0.054 4.054 8 C 0.044 3.956 9 C 0.012 3.988 10 C -0.117 4.117 11 C -0.124 4.124 12 C -0.131 4.131 13 C -0.120 4.120 14 C -0.092 4.092 15 N -0.464 5.464 16 C 0.235 3.765 17 S 0.037 5.963 18 C -0.518 4.518 19 H 0.121 0.879 20 C 0.099 3.901 21 N -0.866 5.866 22 Si 0.840 3.160 23 H -0.263 1.263 24 H -0.266 1.266 25 H -0.239 1.239 26 C -0.103 4.103 27 C -0.102 4.102 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.171 0.829 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.273 0.727 40 H 0.138 0.862 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 10.181 -12.306 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.126 4.126 4 C -0.133 4.133 5 C 0.036 3.964 6 N -0.098 5.098 7 C -0.188 4.188 8 C -0.085 4.085 9 C 0.010 3.990 10 C -0.136 4.136 11 C -0.142 4.142 12 C -0.149 4.149 13 C -0.138 4.138 14 C -0.111 4.111 15 N -0.185 5.185 16 C -0.132 4.132 17 S 0.271 5.729 18 C -0.666 4.666 19 H 0.138 0.862 20 C -0.110 4.110 21 N -0.502 5.502 22 Si 0.665 3.335 23 H -0.188 1.188 24 H -0.191 1.191 25 H -0.164 1.164 26 C -0.123 4.123 27 C -0.121 4.121 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.188 0.812 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.083 0.917 40 H 0.156 0.844 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.120 9.379 -11.353 18.453 hybrid contribution 0.147 0.292 -0.286 0.434 sum -10.973 9.671 -11.639 18.692 Atomic orbital electron populations 1.20784 0.90930 1.02952 1.02280 1.19993 0.96289 0.93076 0.99663 1.20843 0.93032 0.97842 1.00923 1.21050 0.94475 0.96667 1.01120 1.17703 0.80670 0.94572 1.03427 1.42883 1.03699 1.36183 1.27024 1.22434 0.90106 1.05069 1.01209 1.19171 0.90915 1.00683 0.97743 1.17934 0.90792 0.95774 0.94464 1.21029 0.98527 0.97860 0.96163 1.20927 0.92439 1.00602 1.00202 1.21115 0.97284 0.98852 0.97647 1.21118 0.98498 0.97734 0.96496 1.21399 0.91177 0.98909 0.99610 1.70912 1.17048 1.16351 1.14140 1.26109 0.86859 1.01142 0.99126 1.82887 1.14710 1.46761 1.28569 1.22527 0.91485 1.31680 1.20918 0.86153 1.24650 0.96342 0.94808 0.95235 1.69923 1.23636 1.31506 1.25096 0.87029 0.84398 0.81566 0.80529 1.18798 1.19073 1.16383 1.21231 0.94542 0.97562 0.98950 1.20920 0.93066 0.97978 1.00143 0.91154 0.91349 0.91495 0.85423 0.85431 0.81184 0.86325 0.86329 0.86523 0.86084 0.84735 0.91677 0.84446 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.48 16 2 C -0.09 -0.96 5.88 -104.59 -0.62 -1.57 16 3 C -0.11 -1.18 9.69 -39.61 -0.38 -1.56 16 4 C -0.11 -1.50 9.69 -39.40 -0.38 -1.88 16 5 C 0.13 2.06 5.85 -83.61 -0.49 1.58 16 6 N -0.41 -7.88 2.90 -60.46 -0.18 -8.05 16 7 C -0.05 -0.95 10.66 -15.97 -0.17 -1.12 16 8 C 0.04 0.88 6.85 -83.24 -0.57 0.31 16 9 C 0.01 0.20 5.88 -104.89 -0.62 -0.41 16 10 C -0.12 -1.64 9.56 -39.24 -0.38 -2.01 16 11 C -0.12 -1.52 10.03 -39.64 -0.40 -1.91 16 12 C -0.13 -1.63 10.04 -39.51 -0.40 -2.03 16 13 C -0.12 -1.73 10.03 -39.63 -0.40 -2.13 16 14 C -0.09 -1.62 9.70 -39.24 -0.38 -2.01 16 15 N -0.46 -11.15 9.67 -9.84 -0.10 -11.25 16 16 C 0.24 5.41 7.79 -88.29 -0.69 4.72 16 17 S 0.04 0.90 18.16 -107.50 -1.95 -1.05 16 18 C -0.52 -14.90 9.90 30.88 0.31 -14.59 16 19 H 0.12 3.84 7.11 -52.49 -0.37 3.46 16 20 C 0.10 2.82 5.50 -17.48 -0.10 2.72 16 21 N -0.87 -25.67 13.97 55.48 0.78 -24.90 16 22 Si 0.84 19.91 27.73 -169.99 -4.71 15.20 16 23 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 H -0.24 -5.44 6.74 56.52 0.38 -5.05 16 26 C -0.10 -1.56 8.85 -39.40 -0.35 -1.91 16 27 C -0.10 -1.24 9.69 -39.61 -0.38 -1.62 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 33 H 0.17 2.27 7.27 -52.48 -0.38 1.89 16 34 H 0.12 1.38 7.00 -52.49 -0.37 1.02 16 35 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.13 2.66 7.85 -52.48 -0.41 2.24 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.14 2.22 7.56 -52.49 -0.40 1.83 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -32.66 366.74 -11.55 -44.21 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.89 Total: 6.22 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -6.02 Total: -25.90 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.50 Total: -44.20 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.71 Total: 15.20 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -1.95 Total: -1.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.66 -11.55 -44.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012523643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.588 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds