Wall clock time and date at job start Tue Mar 31 2020 05:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99988 * 2 1 4 4 H 1.48502 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46918 * 299.99675 * 3 2 1 6 6 H 1.48495 * 109.47328 * 59.99853 * 3 2 1 7 7 C 1.37876 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00118 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47409 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99446 * 89.99722 * 10 9 7 12 12 O 1.21280 * 120.00291 * 5.03646 * 11 10 9 13 13 C 1.50702 * 119.99889 * 185.03271 * 11 10 9 14 14 N 1.46896 * 109.47475 * 186.23508 * 13 11 10 15 15 C 1.47906 * 111.00240 * 197.10907 * 14 13 11 16 16 C 1.54604 * 102.62984 * 265.42147 * 15 14 13 17 17 C 1.51577 * 102.82433 * 334.43907 * 16 15 14 18 18 C 1.37913 * 131.56178 * 196.20255 * 17 16 15 19 19 C 1.38310 * 120.08165 * 179.61279 * 18 17 16 20 20 C 1.38301 * 119.88243 * 0.02562 * 19 18 17 21 21 C 1.37916 * 120.26309 * 0.14399 * 20 19 18 22 22 C 1.38967 * 107.95378 * 16.04293 * 17 16 15 23 23 C 1.39925 * 120.00113 * 270.00354 * 10 9 7 24 24 C 1.38873 * 120.06746 * 90.81227 * 23 10 9 25 25 C 1.38114 * 119.92231 * 179.74265 * 24 23 10 26 26 C 1.38284 * 120.07265 * 0.53407 * 25 24 23 27 27 C 1.38276 * 120.14104 * 359.73888 * 26 25 24 28 28 C 1.38111 * 120.07003 * 359.97438 * 27 26 25 29 29 H 0.96999 * 119.99618 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47214 * 60.00277 * 9 7 2 31 31 H 1.08995 * 109.47588 * 299.99565 * 9 7 2 32 32 H 1.09008 * 109.47031 * 66.23130 * 13 11 10 33 33 H 1.09004 * 109.46743 * 306.24034 * 13 11 10 34 34 H 1.09004 * 110.77832 * 23.70242 * 15 14 13 35 35 H 1.08996 * 110.77768 * 146.94368 * 15 14 13 36 36 H 1.08994 * 110.74183 * 92.77274 * 16 15 14 37 37 H 1.08995 * 110.74005 * 216.11051 * 16 15 14 38 38 H 1.08001 * 119.96144 * 359.59664 * 18 17 16 39 39 H 1.07995 * 120.05618 * 179.97438 * 19 18 17 40 40 H 1.07994 * 119.87037 * 180.14691 * 20 19 18 41 41 H 1.08002 * 119.89322 * 180.19082 * 21 20 19 42 42 H 1.07997 * 120.03980 * 0.02562 * 24 23 10 43 43 H 1.07999 * 119.96323 * 180.27141 * 25 24 23 44 44 H 1.07998 * 119.92906 * 179.71766 * 26 25 24 45 45 H 1.08001 * 119.96352 * 179.97438 * 27 26 25 46 46 H 1.08006 * 120.03570 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6409 -4.1248 1.1678 12 8 2.1791 -3.7264 2.2161 13 6 3.7044 -5.1926 1.1704 14 7 3.8991 -5.6865 2.5401 15 6 5.1796 -6.4163 2.6634 16 6 4.7535 -7.8862 2.4445 17 6 3.2979 -7.8811 2.8674 18 6 2.4340 -8.9079 3.1857 19 6 1.1308 -8.6282 3.5548 20 6 0.6949 -7.3165 3.6037 21 6 1.5539 -6.2863 3.2830 22 6 2.8688 -6.5601 2.9097 23 6 2.6577 -4.1445 -1.2112 24 6 3.8069 -3.6392 -1.8052 25 6 4.2560 -4.1699 -2.9986 26 6 3.5566 -5.1957 -3.6076 27 6 2.4089 -5.6971 -3.0215 28 6 1.9578 -5.1748 -1.8252 29 1 -0.4849 0.8401 0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 4.6399 -4.7746 0.7984 33 1 3.3936 -6.0164 0.5278 34 1 5.8817 -6.0983 1.8926 35 1 5.6090 -6.2788 3.6558 36 1 4.8496 -8.1637 1.3948 37 1 5.3368 -8.5555 3.0768 38 1 2.7755 -9.9318 3.1464 39 1 0.4545 -9.4326 3.8035 40 1 -0.3220 -7.0982 3.8942 41 1 1.2081 -5.2640 3.3262 42 1 4.3513 -2.8354 -1.3322 43 1 5.1520 -3.7805 -3.4589 44 1 3.9073 -5.6059 -4.5430 45 1 1.8646 -6.4981 -3.4998 46 1 1.0615 -5.5671 -1.3677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012543399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:43 Heat of formation + Delta-G solvation = 50.397824 kcal Electronic energy + Delta-G solvation = -29113.579704 eV Core-core repulsion = 25354.734736 eV Total energy + Delta-G solvation = -3758.844968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89444 -39.62295 -38.00778 -36.59233 -34.78886 -32.72908 -32.20115 -30.70360 -30.02821 -29.40117 -28.91305 -27.65130 -25.95208 -23.02319 -22.85165 -22.43478 -22.29281 -21.14705 -20.80989 -19.02292 -17.30464 -16.64532 -16.54443 -16.07769 -15.63192 -15.43375 -15.37968 -15.12416 -14.90409 -14.28677 -14.22757 -14.05088 -13.53016 -13.32012 -13.17245 -12.97671 -12.75510 -12.61154 -12.37746 -12.28286 -12.14725 -11.91612 -11.56428 -11.40938 -11.30920 -11.19268 -10.99428 -10.86094 -10.72393 -10.64008 -10.17702 -9.65094 -9.46464 -9.12646 -8.72370 -8.68522 -8.46675 -8.31448 -7.87184 -7.77838 -6.06473 -4.10845 1.38949 1.51622 1.53090 1.61302 3.29096 3.29587 3.36931 3.39218 3.44779 3.83641 3.96653 4.03247 4.43353 4.52608 4.73292 4.88973 4.99359 5.10086 5.13579 5.15918 5.19586 5.28738 5.32656 5.36608 5.41645 5.45313 5.49476 5.61563 5.66198 5.74340 5.79808 5.86269 5.93538 6.01578 6.16221 6.24259 6.46553 6.53874 6.58652 6.66349 6.69088 6.85053 6.85481 6.91583 7.05026 7.19884 7.36672 7.40967 7.50314 7.89824 8.18786 8.38217 8.86446 9.03434 9.53910 11.02055 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.010418 B = 0.004210 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.050671 B = 6648.834856 C = 7889.133762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.251 3.749 10 N -0.567 5.567 11 C 0.517 3.483 12 O -0.509 6.509 13 C 0.042 3.958 14 N -0.476 5.476 15 C 0.052 3.948 16 C -0.109 4.109 17 C -0.146 4.146 18 C -0.098 4.098 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.098 4.098 22 C 0.098 3.902 23 C 0.155 3.845 24 C -0.109 4.109 25 C -0.115 4.115 26 C -0.128 4.128 27 C -0.116 4.116 28 C -0.123 4.123 29 H 0.263 0.737 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.128 0.872 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.442 -18.516 -1.455 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.076 0.924 9 C 0.134 3.866 10 N -0.298 5.298 11 C 0.304 3.696 12 O -0.383 6.383 13 C -0.087 4.087 14 N -0.192 5.192 15 C -0.075 4.075 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.116 4.116 19 C -0.154 4.154 20 C -0.128 4.128 21 C -0.118 4.118 22 C 0.002 3.998 23 C 0.063 3.937 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.146 4.146 27 C -0.134 4.134 28 C -0.143 4.143 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.162 0.838 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.048 -17.636 -0.550 19.393 hybrid contribution 0.393 0.469 -0.666 0.904 sum 8.441 -17.167 -1.216 19.169 Atomic orbital electron populations 1.69941 1.05988 1.26940 1.50369 1.24911 0.94864 0.99171 0.95005 0.86449 0.80003 0.83420 0.77604 1.19774 1.20974 1.20833 1.21410 0.93327 0.90472 1.51152 0.92368 1.19380 0.87100 0.81522 0.98647 1.45903 1.46196 1.35534 1.02186 1.20071 0.82992 0.82786 0.83758 1.90618 1.56975 1.60312 1.30398 1.22180 1.00386 0.97668 0.88497 1.59674 1.01010 1.35872 1.22693 1.23204 0.90760 0.90183 1.03383 1.21679 0.92582 0.98629 1.01801 1.21001 0.96393 0.94100 1.03385 1.20283 0.93219 0.97779 1.00358 1.21019 0.95570 0.96661 1.02145 1.21017 0.99573 0.92380 0.99830 1.21106 0.91434 1.01186 0.98064 1.19481 0.92377 0.89401 0.98509 1.17722 0.93637 0.93647 0.88645 1.21572 0.96456 0.99118 0.95714 1.21039 1.00066 0.96877 0.95425 1.21089 0.95984 0.97690 0.99874 1.20959 0.96821 1.00262 0.95405 1.21435 0.99933 0.96849 0.96039 0.92738 0.94986 0.93301 0.87888 0.91859 0.89674 0.89041 0.90254 0.89756 0.86600 0.86116 0.85750 0.83824 0.85406 0.86083 0.86376 0.86179 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.75 9.39 -34.44 -0.32 -15.07 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.25 6.58 5.19 -5.19 -0.03 6.55 16 10 N -0.57 -12.18 2.48 -114.74 -0.28 -12.46 16 11 C 0.52 10.88 7.26 -10.98 -0.08 10.80 16 12 O -0.51 -12.53 13.28 5.56 0.07 -12.45 16 13 C 0.04 0.68 4.28 -4.98 -0.02 0.66 16 14 N -0.48 -7.63 4.61 -170.37 -0.78 -8.41 16 15 C 0.05 0.60 6.99 -2.43 -0.02 0.58 16 16 C -0.11 -1.14 6.97 -26.61 -0.19 -1.32 16 17 C -0.15 -1.95 6.23 -104.04 -0.65 -2.60 16 18 C -0.10 -1.17 10.03 -39.67 -0.40 -1.57 16 19 C -0.14 -1.62 10.06 -39.53 -0.40 -2.02 16 20 C -0.11 -1.52 10.02 -39.68 -0.40 -1.92 16 21 C -0.10 -1.67 9.30 -39.27 -0.37 -2.03 16 22 C 0.10 1.59 5.23 -83.40 -0.44 1.15 16 23 C 0.15 2.78 3.79 -83.69 -0.32 2.46 16 24 C -0.11 -1.78 9.97 -39.39 -0.39 -2.17 16 25 C -0.12 -1.51 10.04 -39.61 -0.40 -1.91 16 26 C -0.13 -1.54 10.04 -39.55 -0.40 -1.93 16 27 C -0.12 -1.48 10.04 -39.61 -0.40 -1.88 16 28 C -0.12 -1.92 9.92 -39.39 -0.39 -2.31 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.03 0.87 8.05 -51.93 -0.42 0.45 16 31 H 0.05 1.43 7.36 -51.93 -0.38 1.04 16 32 H 0.10 1.51 7.63 -51.92 -0.40 1.11 16 33 H 0.06 0.97 7.60 -51.93 -0.39 0.58 16 34 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.14 2.84 5.96 -52.49 -0.31 2.52 16 42 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 383.82 15.07 5.78 5.78 Total: -1.00 -33.11 383.82 -11.67 -44.78 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.49 Total: 4.56 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -5.69 Total: -12.84 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.33 Total: -46.66 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.11 -11.67 -44.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012543399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.179 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds