Wall clock time and date at job start Tue Mar 31 2020 05:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48501 * 109.47176 * 274.65421 * 3 2 1 5 5 H 1.48501 * 109.47269 * 34.65607 * 3 2 1 6 6 H 1.48503 * 109.46663 * 154.65843 * 3 2 1 7 7 C 1.39857 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99867 * 162.13355 * 7 2 1 9 9 C 1.41141 * 120.00701 * 342.12336 * 7 2 1 10 10 C 1.40881 * 120.15580 * 155.09421 * 9 7 2 11 11 C 1.36346 * 119.83542 * 180.02562 * 10 9 7 12 12 C 1.39566 * 120.15717 * 0.25218 * 11 10 9 13 13 N 1.38853 * 119.83735 * 179.72707 * 12 11 10 14 14 C 1.46506 * 120.00046 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.46715 * 324.99857 * 14 13 12 16 16 C 1.50703 * 109.47319 * 205.00067 * 14 13 12 17 17 O 1.21280 * 119.99479 * 359.97438 * 16 14 13 18 18 N 1.34770 * 120.00080 * 180.02562 * 16 14 13 19 19 C 1.46502 * 120.00063 * 180.02562 * 18 16 14 20 20 C 1.53000 * 117.49568 * 223.62286 * 19 18 16 21 21 C 1.53002 * 117.49773 * 154.99925 * 19 18 16 22 22 C 1.50700 * 109.47094 * 84.99672 * 14 13 12 23 23 C 1.38239 * 119.99825 * 39.73055 * 22 14 13 24 24 C 1.38234 * 119.99651 * 179.81049 * 23 22 14 25 25 C 1.38242 * 119.99910 * 0.39272 * 24 23 22 26 26 C 1.38233 * 119.99893 * 359.86265 * 25 24 23 27 27 C 1.38231 * 120.00421 * 359.95059 * 26 25 24 28 28 C 1.39562 * 120.31939 * 359.49214 * 12 11 10 29 29 C 1.36347 * 120.15847 * 0.51042 * 28 12 11 30 30 H 0.96997 * 120.00042 * 359.97438 * 1 2 3 31 31 H 1.08007 * 120.08378 * 0.02562 * 10 9 7 32 32 H 1.07994 * 119.91918 * 179.97438 * 11 10 9 33 33 H 0.97005 * 120.00403 * 359.97438 * 13 12 11 34 34 H 0.97001 * 119.99980 * 359.97438 * 18 16 14 35 35 H 1.09000 * 115.54767 * 9.32651 * 19 18 16 36 36 H 1.09002 * 117.50090 * 359.97438 * 20 19 18 37 37 H 1.09001 * 117.50166 * 145.02309 * 20 19 18 38 38 H 1.09000 * 117.49397 * 214.97540 * 21 19 18 39 39 H 1.08998 * 117.49773 * 359.97368 * 21 19 18 40 40 H 1.07999 * 119.99858 * 359.97438 * 23 22 14 41 41 H 1.07994 * 120.00187 * 180.22834 * 24 23 22 42 42 H 1.07998 * 119.99929 * 179.83315 * 25 24 23 43 43 H 1.08002 * 119.99779 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.00284 * 180.02562 * 27 26 25 45 45 H 1.08003 * 119.92356 * 180.23828 * 28 12 11 46 46 H 1.08005 * 120.08249 * 179.77272 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3921 2.1033 -1.3955 5 1 1.4931 2.6223 0.7961 6 1 3.5864 1.4137 0.5993 7 6 2.0083 -1.2112 -0.0005 8 1 3.0493 -1.2337 -0.2875 9 6 1.3538 -2.4043 0.3741 10 6 1.8229 -3.6466 -0.0962 11 6 1.1854 -4.7950 0.2695 12 6 0.0674 -4.7413 1.1032 13 7 -0.5803 -5.9145 1.4668 14 6 -1.7545 -5.8623 2.3413 15 1 -1.6322 -5.0573 3.0660 16 6 -1.8986 -7.1747 3.0679 17 8 -1.0994 -8.0661 2.8738 18 7 -2.9161 -7.3582 3.9324 19 6 -3.0559 -8.6339 4.6391 20 6 -4.4585 -9.2371 4.7372 21 6 -3.8013 -8.6233 5.9751 22 6 -2.9873 -5.6089 1.5125 23 6 -3.1337 -6.2269 0.2846 24 6 -4.2663 -5.9975 -0.4739 25 6 -5.2488 -5.1437 -0.0082 26 6 -5.0999 -4.5217 1.2172 27 6 -3.9691 -4.7540 1.9775 28 6 -0.3998 -3.5146 1.5771 29 6 0.2278 -2.3582 1.2196 30 1 -0.4850 0.8400 0.0004 31 1 2.6856 -3.6893 -0.7447 32 1 1.5436 -5.7481 -0.0906 33 1 -0.2557 -6.7687 1.1412 34 1 -3.5555 -6.6454 4.0872 35 1 -2.2175 -9.3227 4.5359 36 1 -5.2774 -8.6846 4.2763 37 1 -4.5432 -10.3231 4.6985 38 1 -3.4536 -9.3056 6.7508 39 1 -4.1874 -7.6672 6.3285 40 1 -2.3643 -6.8910 -0.0808 41 1 -4.3824 -6.4831 -1.4315 42 1 -6.1325 -4.9624 -0.6021 43 1 -5.8673 -3.8543 1.5808 44 1 -3.8530 -4.2683 2.9351 45 1 -1.2632 -3.4808 2.2251 46 1 -0.1370 -1.4092 1.5842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012631867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:36 Heat of formation + Delta-G solvation = 45.783286 kcal Electronic energy + Delta-G solvation = -28127.137150 eV Core-core repulsion = 24368.092081 eV Total energy + Delta-G solvation = -3759.045070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.42819 -38.86897 -37.83917 -37.21235 -35.04019 -33.39926 -32.84051 -31.05449 -30.75041 -29.44428 -28.66826 -26.63453 -24.14712 -22.75347 -22.70261 -22.43616 -21.52777 -21.20515 -20.62095 -19.62799 -17.61984 -17.21184 -16.90871 -16.80137 -15.83010 -15.42629 -15.33609 -14.91516 -14.69639 -14.43533 -14.38298 -13.91587 -13.50263 -13.32298 -13.07367 -12.89910 -12.62679 -12.54992 -12.40081 -11.92246 -11.90307 -11.76358 -11.60451 -11.50092 -11.06286 -11.00510 -10.97945 -10.84190 -10.79263 -10.49277 -10.07837 -9.70488 -9.31389 -9.26703 -8.97367 -8.80813 -8.65039 -8.52671 -7.48229 -6.64442 -6.42182 -4.03361 1.39403 1.52355 2.46945 2.81788 2.92291 3.11484 3.15047 3.20204 3.35179 3.62608 3.83715 4.05855 4.30714 4.46914 4.61158 4.67126 4.68897 4.74439 4.93295 4.96109 5.10244 5.20575 5.29795 5.38313 5.48568 5.58795 5.64974 5.71507 5.74527 5.84291 6.02420 6.12908 6.27362 6.28394 6.32938 6.52699 6.60055 6.65999 6.87931 6.93336 7.08341 7.20001 7.26988 7.36104 7.54098 7.69510 7.84039 8.06520 8.15470 8.27481 8.46764 8.68558 8.79255 9.06627 9.15170 10.37555 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.002987 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.529349 B = 9371.455133 C =10103.536593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.072 0.928 9 C 0.077 3.923 10 C -0.187 4.187 11 C -0.151 4.151 12 C 0.092 3.908 13 N -0.736 5.736 14 C 0.189 3.811 15 H 0.107 0.893 16 C 0.524 3.476 17 O -0.529 6.529 18 N -0.700 5.700 19 C 0.082 3.918 20 C -0.194 4.194 21 C -0.190 4.190 22 C -0.093 4.093 23 C -0.086 4.086 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.113 4.113 28 C -0.160 4.160 29 C -0.125 4.125 30 H 0.276 0.724 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.395 0.605 34 H 0.403 0.597 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.086 0.914 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.233 -11.861 7.775 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.090 0.910 9 C 0.074 3.926 10 C -0.207 4.207 11 C -0.173 4.173 12 C -0.004 4.004 13 N -0.372 5.372 14 C 0.077 3.923 15 H 0.124 0.876 16 C 0.310 3.690 17 O -0.404 6.404 18 N -0.351 5.351 19 C -0.024 4.024 20 C -0.232 4.232 21 C -0.229 4.229 22 C -0.095 4.095 23 C -0.104 4.104 24 C -0.139 4.139 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.131 4.131 28 C -0.181 4.181 29 C -0.144 4.144 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.231 0.769 34 H 0.238 0.762 35 H 0.155 0.845 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.104 0.896 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.898 -12.237 7.700 19.375 hybrid contribution -0.019 0.983 -0.169 0.997 sum -12.918 -11.255 7.531 18.715 Atomic orbital electron populations 1.69865 1.07329 1.28546 1.37598 1.25790 0.94648 1.00854 0.92728 0.86427 0.80778 0.81379 0.78813 1.19866 1.20301 1.18665 1.19369 0.97890 0.91352 1.41115 0.90952 1.17496 0.92312 0.91977 0.90781 1.20546 1.02779 0.92566 1.04821 1.19789 0.97501 0.97174 1.02838 1.17253 0.95704 0.85081 1.02368 1.43555 1.30565 1.07081 1.55975 1.19240 0.86179 0.94462 0.92410 0.87597 1.20792 0.80008 0.89561 0.78623 1.90671 1.42124 1.43758 1.63875 1.45314 1.30037 1.15714 1.44017 1.21583 0.96626 0.88425 0.95811 1.23422 0.96821 1.01246 1.01754 1.23380 1.04347 1.03264 0.91863 1.20233 0.95057 0.97945 0.96307 1.20914 0.96849 0.98924 0.93755 1.21116 0.94235 0.98922 0.99613 1.21116 0.99094 0.97339 0.96271 1.21040 0.97836 0.99787 0.95070 1.20969 0.93926 0.98002 1.00242 1.20056 1.01444 0.91958 1.04664 1.20897 0.98226 0.96330 0.98996 0.91379 0.88990 0.89443 0.76916 0.76246 0.84484 0.88439 0.88054 0.87886 0.88399 0.86231 0.86304 0.86388 0.86163 0.86145 0.89594 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.34 10.98 55.54 0.61 -20.73 16 2 C 0.07 1.93 5.13 -17.34 -0.09 1.85 16 3 Si 0.90 19.23 29.60 -169.99 -5.03 14.20 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 7 C -0.47 -12.68 9.03 -37.88 -0.34 -13.02 16 8 H 0.07 1.91 7.91 -52.48 -0.41 1.49 16 9 C 0.08 2.09 5.57 -106.80 -0.59 1.49 16 10 C -0.19 -4.66 9.74 -39.26 -0.38 -5.05 16 11 C -0.15 -3.44 9.82 -39.77 -0.39 -3.83 16 12 C 0.09 2.00 6.64 -83.69 -0.56 1.45 16 13 N -0.74 -13.33 4.32 -54.29 -0.23 -13.57 16 14 C 0.19 2.85 2.28 -70.23 -0.16 2.69 16 15 H 0.11 1.59 6.30 -51.93 -0.33 1.26 16 16 C 0.52 7.48 7.20 -10.99 -0.08 7.40 16 17 O -0.53 -9.17 15.40 5.56 0.09 -9.09 16 18 N -0.70 -7.51 5.46 -53.80 -0.29 -7.81 16 19 C 0.08 0.79 6.43 -67.93 -0.44 0.35 16 20 C -0.19 -1.44 10.46 -26.73 -0.28 -1.72 16 21 C -0.19 -1.33 10.46 -26.73 -0.28 -1.61 16 22 C -0.09 -1.32 4.57 -104.62 -0.48 -1.80 16 23 C -0.09 -1.27 9.32 -39.58 -0.37 -1.64 16 24 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 25 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 26 C -0.12 -1.41 10.05 -39.59 -0.40 -1.80 16 27 C -0.11 -1.41 9.51 -39.58 -0.38 -1.79 16 28 C -0.16 -3.66 9.07 -39.77 -0.36 -4.02 16 29 C -0.12 -3.23 8.63 -39.26 -0.34 -3.57 16 30 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 31 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.40 7.09 7.79 -40.82 -0.32 6.78 16 34 H 0.40 3.47 8.55 -40.82 -0.35 3.12 16 35 H 0.14 1.50 7.40 -51.93 -0.38 1.12 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.12 1.81 7.71 -52.49 -0.40 1.40 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.12 1.24 8.04 -52.49 -0.42 0.82 16 45 H 0.09 1.77 6.14 -52.48 -0.32 1.44 16 46 H 0.12 3.16 6.18 -52.48 -0.32 2.84 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -30.61 388.26 -11.93 -42.54 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -6.21 Total: 17.06 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -6.71 Total: -28.46 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.08 Total: -42.10 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.61 -11.93 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012631867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.323 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds