Wall clock time and date at job start Tue Mar 31 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86800 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47155 * 240.00120 * 3 2 1 5 5 H 1.48496 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46957 * 120.00209 * 3 2 1 7 7 C 1.39860 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00223 * 163.06425 * 7 2 1 9 9 C 1.41135 * 120.00168 * 343.06203 * 7 2 1 10 10 C 1.40885 * 120.15703 * 154.25044 * 9 7 2 11 11 C 1.36342 * 119.83745 * 179.73838 * 10 9 7 12 12 C 1.39574 * 120.15698 * 0.54007 * 11 10 9 13 13 N 1.38865 * 119.83960 * 179.75595 * 12 11 10 14 14 C 1.46499 * 119.99835 * 359.97438 * 13 12 11 15 15 H 1.08999 * 109.47568 * 35.00238 * 14 13 12 16 16 C 1.50700 * 109.46931 * 155.00123 * 14 13 12 17 17 O 1.21285 * 119.99917 * 359.97438 * 16 14 13 18 18 N 1.34769 * 120.00220 * 180.02562 * 16 14 13 19 19 C 1.46499 * 120.00062 * 179.97438 * 18 16 14 20 20 C 1.53000 * 117.49860 * 223.61933 * 19 18 16 21 21 C 1.53000 * 60.00347 * 252.51314 * 20 19 18 22 22 C 1.50701 * 109.47223 * 274.99735 * 14 13 12 23 23 C 1.38236 * 120.00085 * 319.73175 * 22 14 13 24 24 C 1.38231 * 119.99726 * 179.78648 * 23 22 14 25 25 C 1.38236 * 120.00380 * 0.44125 * 24 23 22 26 26 C 1.38235 * 119.99444 * 359.81350 * 25 24 23 27 27 C 1.38226 * 120.00377 * 359.97438 * 26 25 24 28 28 C 1.39563 * 120.31782 * 359.73651 * 12 11 10 29 29 C 1.36341 * 120.15942 * 359.97438 * 28 12 11 30 30 H 0.97001 * 119.99895 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.08306 * 0.02716 * 10 9 7 32 32 H 1.07998 * 119.92308 * 180.25087 * 11 10 9 33 33 H 0.96996 * 119.99505 * 179.97438 * 13 12 11 34 34 H 0.97006 * 120.00085 * 359.97438 * 18 16 14 35 35 H 1.08997 * 115.55054 * 9.32962 * 19 18 16 36 36 H 1.08999 * 117.49979 * 0.02562 * 20 19 18 37 37 H 1.09002 * 117.49989 * 145.01962 * 20 19 18 38 38 H 1.09000 * 117.49588 * 252.51748 * 21 20 19 39 39 H 1.08998 * 117.52289 * 107.48085 * 21 20 19 40 40 H 1.08002 * 119.99825 * 359.97438 * 23 22 14 41 41 H 1.08008 * 120.00000 * 180.27478 * 24 23 22 42 42 H 1.07998 * 120.00281 * 179.83578 * 25 24 23 43 43 H 1.08003 * 119.99780 * 180.02562 * 26 25 24 44 44 H 1.08004 * 120.00032 * 180.02562 * 27 26 25 45 45 H 1.07995 * 119.92194 * 179.97438 * 28 12 11 46 46 H 1.08004 * 120.07814 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2781 2.7464 0.0006 6 1 3.0969 1.6963 1.2125 7 6 2.0084 -1.2112 -0.0005 8 1 3.0533 -1.2315 -0.2730 9 6 1.3486 -2.4072 0.3550 10 6 1.8138 -3.6442 -0.1331 11 6 1.1748 -4.7960 0.2189 12 6 0.0555 -4.7505 1.0514 13 7 -0.5934 -5.9272 1.4016 14 6 -0.1031 -7.2122 0.8969 15 1 0.9845 -7.1857 0.8312 16 6 -0.5229 -8.3138 1.8357 17 8 -1.1677 -8.0513 2.8289 18 7 -0.1810 -9.5905 1.5723 19 6 -0.5885 -10.6612 2.4852 20 6 0.4533 -11.7256 2.8357 21 6 -0.7127 -12.0728 1.9079 22 6 -0.6829 -7.4692 -0.4702 23 6 -2.0022 -7.1503 -0.7326 24 6 -2.5327 -7.3820 -1.9878 25 6 -1.7466 -7.9410 -2.9781 26 6 -0.4289 -8.2647 -2.7140 27 6 0.1029 -8.0290 -1.4601 28 6 -0.4145 -3.5282 1.5340 29 6 0.2182 -2.3690 1.1950 30 1 -0.4850 0.8401 0.0004 31 1 2.6774 -3.6804 -0.7806 32 1 1.5327 -5.7453 -0.1512 33 1 -1.3713 -5.8983 1.9804 34 1 0.3351 -9.8004 0.7782 35 1 -1.2945 -10.3720 3.2637 36 1 1.4420 -11.6288 2.3873 37 1 0.4330 -12.1366 3.8450 38 1 -1.5002 -12.7121 2.3069 39 1 -0.4916 -12.2046 0.8487 40 1 -2.6175 -6.7174 0.0423 41 1 -3.5622 -7.1288 -2.1942 42 1 -2.1619 -8.1245 -3.9580 43 1 0.1854 -8.7011 -3.4878 44 1 1.1326 -8.2816 -1.2540 45 1 -1.2814 -3.5004 2.1775 46 1 -0.1463 -1.4239 1.5696 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012631869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:40 Heat of formation + Delta-G solvation = 45.698873 kcal Electronic energy + Delta-G solvation = -27995.546956 eV Core-core repulsion = 24236.498226 eV Total energy + Delta-G solvation = -3759.048730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.44859 -38.89816 -37.84764 -37.22309 -35.05768 -33.38678 -32.83492 -31.12485 -30.78686 -29.45853 -28.60577 -26.67821 -24.16361 -22.77979 -22.71265 -22.47157 -21.58418 -21.14683 -20.53355 -19.77155 -17.66919 -17.18627 -16.85271 -16.80536 -15.89040 -15.47057 -15.29324 -14.98851 -14.73097 -14.49552 -14.34385 -13.91773 -13.50954 -13.35691 -13.01654 -12.93568 -12.72506 -12.58561 -12.30811 -11.94074 -11.91250 -11.79558 -11.61466 -11.48635 -11.11907 -11.00828 -10.98030 -10.84901 -10.82884 -10.48548 -10.10106 -9.68047 -9.29378 -9.27637 -8.99281 -8.84626 -8.69609 -8.54218 -7.47715 -6.63475 -6.41109 -4.03935 1.35544 1.48203 2.45489 2.80367 2.94465 3.11667 3.15318 3.18392 3.36121 3.61260 3.80230 4.06417 4.29645 4.45597 4.61253 4.62412 4.67866 4.75337 4.91057 4.92241 5.06240 5.16817 5.28531 5.35065 5.47426 5.55181 5.63406 5.67874 5.73096 5.84293 5.98587 6.09200 6.25779 6.27029 6.30903 6.48391 6.56548 6.63201 6.84056 7.04105 7.06100 7.18539 7.24041 7.32975 7.57746 7.67337 7.79721 8.05396 8.15835 8.34040 8.44976 8.66236 8.79703 9.06904 9.15363 10.39040 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.002821 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.314578 B = 9924.476801 C =10835.445555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.078 3.922 10 C -0.188 4.188 11 C -0.155 4.155 12 C 0.093 3.907 13 N -0.736 5.736 14 C 0.189 3.811 15 H 0.106 0.894 16 C 0.523 3.477 17 O -0.528 6.528 18 N -0.700 5.700 19 C 0.082 3.918 20 C -0.194 4.194 21 C -0.190 4.190 22 C -0.093 4.093 23 C -0.086 4.086 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.114 4.114 28 C -0.156 4.156 29 C -0.122 4.122 30 H 0.277 0.723 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.396 0.604 34 H 0.402 0.598 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.088 0.912 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 -20.687 -1.436 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.498 4.498 8 H 0.090 0.910 9 C 0.075 3.925 10 C -0.209 4.209 11 C -0.177 4.177 12 C -0.003 4.003 13 N -0.372 5.372 14 C 0.077 3.923 15 H 0.123 0.877 16 C 0.309 3.691 17 O -0.403 6.403 18 N -0.351 5.351 19 C -0.024 4.024 20 C -0.233 4.233 21 C -0.228 4.228 22 C -0.095 4.095 23 C -0.104 4.104 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.138 4.138 27 C -0.133 4.133 28 C -0.178 4.178 29 C -0.142 4.142 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.232 0.768 34 H 0.237 0.763 35 H 0.155 0.845 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.106 0.894 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.820 -20.358 -0.793 20.568 hybrid contribution 0.355 0.700 -0.417 0.889 sum -2.465 -19.658 -1.210 19.849 Atomic orbital electron populations 1.69843 1.07322 1.28718 1.37619 1.25795 0.94676 1.00861 0.92735 0.86458 0.80113 0.80865 0.79712 1.19288 1.20591 1.19093 1.19333 0.97511 0.91252 1.41738 0.91003 1.17491 0.92359 0.92017 0.90649 1.20540 1.02840 0.92711 1.04770 1.19834 0.97777 0.96939 1.03187 1.17264 0.95922 0.84641 1.02497 1.43576 1.35230 1.00719 1.57641 1.19235 0.99841 0.84727 0.88478 0.87658 1.20795 0.78808 0.83290 0.86167 1.90679 1.38827 1.82671 1.28125 1.45311 1.57020 1.05871 1.26885 1.21582 1.01377 0.82867 0.96616 1.23431 0.95195 1.03538 1.01123 1.23372 1.01407 0.98194 0.99843 1.20253 0.94624 0.99076 0.95584 1.20936 0.94867 0.97613 0.97007 1.21133 0.99963 0.99320 0.93370 1.21121 0.94409 0.99364 0.98975 1.21039 0.95485 1.00726 0.96588 1.20964 0.99259 0.99796 0.93295 1.20023 1.01460 0.91728 1.04593 1.20920 0.98073 0.96260 0.98919 0.91259 0.89154 0.89638 0.76827 0.76279 0.84495 0.88423 0.87997 0.87923 0.88420 0.86170 0.86242 0.86365 0.86172 0.86163 0.89373 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.60 10.96 55.54 0.61 -20.99 16 2 C 0.07 1.93 5.15 -17.34 -0.09 1.85 16 3 Si 0.90 19.37 29.59 -169.99 -5.03 14.34 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.47 -12.72 9.03 -37.88 -0.34 -13.07 16 8 H 0.07 1.89 7.90 -52.49 -0.41 1.47 16 9 C 0.08 2.10 5.57 -106.79 -0.59 1.51 16 10 C -0.19 -4.64 9.74 -39.26 -0.38 -5.03 16 11 C -0.16 -3.44 9.07 -39.77 -0.36 -3.80 16 12 C 0.09 2.02 6.64 -83.68 -0.56 1.47 16 13 N -0.74 -13.33 4.34 -54.28 -0.24 -13.56 16 14 C 0.19 2.79 2.28 -70.23 -0.16 2.63 16 15 H 0.11 1.52 6.31 -51.93 -0.33 1.20 16 16 C 0.52 7.38 7.20 -10.99 -0.08 7.30 16 17 O -0.53 -9.14 15.40 5.55 0.09 -9.06 16 18 N -0.70 -7.34 5.47 -53.80 -0.29 -7.64 16 19 C 0.08 0.77 6.43 -67.93 -0.44 0.34 16 20 C -0.19 -1.40 10.46 -26.73 -0.28 -1.68 16 21 C -0.19 -1.31 10.46 -26.73 -0.28 -1.59 16 22 C -0.09 -1.28 4.56 -104.62 -0.48 -1.76 16 23 C -0.09 -1.24 9.32 -39.58 -0.37 -1.61 16 24 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 27 C -0.11 -1.35 9.51 -39.59 -0.38 -1.73 16 28 C -0.16 -3.70 9.82 -39.77 -0.39 -4.09 16 29 C -0.12 -3.21 8.63 -39.26 -0.34 -3.55 16 30 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 31 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 32 H 0.09 1.65 6.14 -52.49 -0.32 1.33 16 33 H 0.40 7.20 7.79 -40.82 -0.32 6.88 16 34 H 0.40 3.33 8.55 -40.82 -0.35 2.98 16 35 H 0.14 1.49 7.40 -51.93 -0.38 1.11 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.12 1.81 7.73 -52.49 -0.41 1.40 16 41 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 44 H 0.12 1.13 8.04 -52.48 -0.42 0.71 16 45 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 46 H 0.12 3.26 6.19 -52.48 -0.32 2.93 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -30.72 388.27 -11.93 -42.65 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -6.21 Total: 16.65 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -6.70 Total: -28.25 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.08 Total: -42.19 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.72 -11.93 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012631869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.350 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds