Wall clock time and date at job start Tue Mar 31 2020 05:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86806 * 120.00131 * 2 1 4 4 H 1.48495 * 109.47217 * 274.69913 * 3 2 1 5 5 H 1.48504 * 109.46866 * 34.69345 * 3 2 1 6 6 H 1.48496 * 109.47198 * 154.69001 * 3 2 1 7 7 C 1.39901 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00666 * 162.51415 * 7 2 1 9 9 C 1.41149 * 119.99767 * 342.51443 * 7 2 1 10 10 C 1.40869 * 120.16359 * 334.84921 * 9 7 2 11 11 C 1.36380 * 119.82510 * 179.69236 * 10 9 7 12 12 C 1.39484 * 120.16934 * 0.60706 * 11 10 9 13 13 N 1.39235 * 119.82951 * 179.69214 * 12 11 10 14 14 C 1.34772 * 120.00322 * 33.22223 * 13 12 11 15 15 O 1.21281 * 120.00001 * 5.18275 * 14 13 12 16 16 C 1.50698 * 120.00062 * 185.17928 * 14 13 12 17 17 H 1.09004 * 109.45975 * 60.00437 * 16 14 13 18 18 C 1.52911 * 109.46494 * 300.02496 * 16 14 13 19 19 C 1.50454 * 109.92207 * 288.55905 * 18 16 14 20 20 O 1.21290 * 119.61615 * 144.81488 * 19 18 16 21 21 N 1.34566 * 120.76986 * 324.82161 * 19 18 16 22 22 C 1.39826 * 120.44976 * 0.80035 * 21 19 18 23 23 C 1.38859 * 120.19261 * 198.52016 * 22 21 19 24 24 C 1.38107 * 119.89500 * 179.97438 * 23 22 21 25 25 C 1.38308 * 120.08706 * 0.02562 * 24 23 22 26 26 C 1.38275 * 120.14649 * 359.97438 * 25 24 23 27 27 C 1.38086 * 120.03107 * 0.03285 * 26 25 24 28 28 C 1.39475 * 120.33185 * 359.66434 * 12 11 10 29 29 C 1.36371 * 120.17043 * 0.02901 * 28 12 11 30 30 H 0.97002 * 120.00232 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.08562 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.91482 * 180.27034 * 11 10 9 33 33 H 0.97005 * 119.99508 * 213.22361 * 13 12 11 34 34 H 1.09005 * 109.39868 * 48.69564 * 18 16 14 35 35 H 1.09000 * 109.39702 * 168.43105 * 18 16 14 36 36 H 0.96999 * 119.77723 * 180.76848 * 21 19 18 37 37 H 1.07999 * 120.05372 * 359.95038 * 23 22 21 38 38 H 1.07994 * 119.95851 * 179.97438 * 24 23 22 39 39 H 1.07996 * 119.92080 * 180.02562 * 25 24 23 40 40 H 1.08010 * 119.98366 * 179.97438 * 26 25 24 41 41 H 1.07999 * 119.91479 * 180.02562 * 28 12 11 42 42 H 1.08007 * 120.08617 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3909 2.1038 -1.3953 5 1 1.4933 2.6220 0.7969 6 1 3.5863 1.4136 0.5985 7 6 2.0082 -1.2115 -0.0005 8 1 3.0509 -1.2331 -0.2816 9 6 1.3514 -2.4059 0.3662 10 6 0.2240 -2.3633 1.2098 11 6 -0.4091 -3.5210 1.5547 12 6 0.0646 -4.7459 1.0847 13 7 -0.5834 -5.9239 1.4465 14 6 -1.9181 -5.9289 1.6332 15 8 -2.5674 -4.9326 1.3955 16 6 -2.6038 -7.1726 2.1374 17 1 -2.2001 -7.4392 3.1142 18 6 -2.3632 -8.3204 1.1562 19 6 -3.1506 -8.0903 -0.1051 20 8 -2.6865 -8.4322 -1.1722 21 7 -4.3637 -7.5094 -0.0630 22 6 -4.9081 -7.0932 1.1558 23 6 -6.2719 -6.8567 1.2670 24 6 -6.8032 -6.4463 2.4739 25 6 -5.9788 -6.2703 3.5704 26 6 -4.6204 -6.5051 3.4627 27 6 -4.0833 -6.9154 2.2586 28 6 1.1836 -4.7964 0.2538 29 6 1.8235 -3.6468 -0.1048 30 1 -0.4850 0.8400 0.0004 31 1 -0.1407 -1.4161 1.5786 32 1 -1.2762 -3.4897 2.1978 33 1 -0.0741 -6.7411 1.5641 34 1 -1.3015 -8.3743 0.9153 35 1 -2.6776 -9.2589 1.6128 36 1 -4.8636 -7.3781 -0.8837 37 1 -6.9161 -6.9931 0.4109 38 1 -7.8636 -6.2616 2.5614 39 1 -6.3972 -5.9497 4.5130 40 1 -3.9790 -6.3665 4.3206 41 1 1.5444 -5.7485 -0.1066 42 1 2.6897 -3.6874 -0.7487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012973417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:23 Heat of formation + Delta-G solvation = -22.465725 kcal Electronic energy + Delta-G solvation = -28023.192834 eV Core-core repulsion = 24125.355171 eV Total energy + Delta-G solvation = -3897.837663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44793 -39.38527 -38.74831 -37.25081 -35.32879 -34.48581 -34.18050 -32.88413 -30.36999 -29.54545 -29.50110 -28.93340 -25.98751 -24.62286 -23.05978 -22.82254 -21.62938 -21.16163 -20.04836 -18.88027 -18.11167 -17.49193 -17.31485 -17.07204 -16.27365 -15.81211 -15.67159 -15.15437 -14.91504 -14.54236 -14.43067 -14.01028 -13.88535 -13.80888 -13.31810 -13.15523 -12.85119 -12.70326 -12.50185 -12.26449 -11.98972 -11.83683 -11.54212 -11.43186 -11.31627 -11.11412 -10.94265 -10.79893 -10.51888 -10.18668 -9.96492 -9.84600 -9.47435 -9.21367 -8.96574 -8.67719 -8.15820 -7.52748 -7.00972 -6.73886 -4.28951 1.04813 1.17999 2.40993 2.53155 2.88587 2.96761 3.07440 3.10131 3.12871 3.31355 3.48353 3.85878 3.93720 4.10946 4.30826 4.46778 4.64061 4.65079 4.84464 4.92337 5.10920 5.13991 5.21448 5.30720 5.38306 5.65543 5.70731 5.76600 5.96711 6.16080 6.20997 6.36370 6.38096 6.52296 6.71649 6.77598 6.97054 7.03552 7.04204 7.14830 7.28613 7.58739 7.66491 7.84023 7.94987 8.05158 8.19315 8.30585 8.62163 8.73257 8.88522 8.99989 10.18992 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.002979 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.768714 B = 9398.409714 C =10254.705291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.107 3.893 10 C -0.156 4.156 11 C -0.084 4.084 12 C -0.008 4.008 13 N -0.648 5.648 14 C 0.496 3.504 15 O -0.510 6.510 16 C -0.066 4.066 17 H 0.121 0.879 18 C -0.132 4.132 19 C 0.523 3.477 20 O -0.523 6.523 21 N -0.660 5.660 22 C 0.175 3.825 23 C -0.154 4.154 24 C -0.087 4.087 25 C -0.142 4.142 26 C -0.070 4.070 27 C -0.096 4.096 28 C -0.102 4.102 29 C -0.216 4.216 30 H 0.281 0.719 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.393 0.607 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.412 0.588 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.090 0.910 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.571 -14.689 8.071 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.104 3.896 10 C -0.176 4.176 11 C -0.104 4.104 12 C -0.100 4.100 13 N -0.291 5.291 14 C 0.281 3.719 15 O -0.385 6.385 16 C -0.088 4.088 17 H 0.139 0.861 18 C -0.172 4.172 19 C 0.311 3.689 20 O -0.398 6.398 21 N -0.304 5.304 22 C 0.079 3.921 23 C -0.175 4.175 24 C -0.105 4.105 25 C -0.161 4.161 26 C -0.089 4.089 27 C -0.099 4.099 28 C -0.122 4.122 29 C -0.236 4.236 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.119 0.881 33 H 0.227 0.773 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.250 0.750 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.108 0.892 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.832 -14.059 7.417 19.235 hybrid contribution 0.276 0.530 -0.424 0.733 sum -10.556 -13.528 6.993 18.529 Atomic orbital electron populations 1.69864 1.07585 1.29302 1.34504 1.25943 0.94716 1.01387 0.92338 0.86316 0.80727 0.80726 0.79060 1.19577 1.20014 1.18394 1.19551 0.97997 0.91265 1.40003 0.90361 1.17663 0.91157 0.92059 0.88695 1.20968 0.99057 0.96688 1.00924 1.20397 0.98760 0.91572 0.99707 1.17147 0.99479 0.84891 1.08485 1.42953 1.06553 1.11597 1.68033 1.20226 0.82508 0.89384 0.79796 1.90754 1.64224 1.34477 1.49056 1.20270 0.93223 0.94099 1.01228 0.86126 1.21737 1.02470 0.99916 0.93099 1.20549 0.80733 0.76169 0.91450 1.90794 1.67953 1.49667 1.31355 1.43543 1.19310 1.58605 1.08900 1.17560 0.92419 0.97020 0.85118 1.20720 0.92380 1.05233 0.99164 1.20945 0.99886 0.97568 0.92150 1.21053 0.93488 1.02470 0.99114 1.20810 0.95360 0.96419 0.96285 1.18873 0.92737 1.04565 0.93763 1.20049 0.96866 0.97264 0.98049 1.20552 1.03898 0.92488 1.06627 0.90782 0.86301 0.88088 0.77330 0.86885 0.86723 0.75040 0.85505 0.85543 0.85678 0.85393 0.89188 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.00 10.97 55.55 0.61 -20.39 16 2 C 0.07 1.90 5.14 -17.34 -0.09 1.81 16 3 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.28 9.04 -37.86 -0.34 -12.62 16 8 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 9 C 0.11 2.90 5.57 -106.80 -0.59 2.30 16 10 C -0.16 -4.22 8.63 -39.26 -0.34 -4.56 16 11 C -0.08 -2.11 8.57 -39.79 -0.34 -2.45 16 12 C -0.01 -0.18 6.29 -83.57 -0.53 -0.71 16 13 N -0.65 -11.28 5.17 -9.74 -0.05 -11.33 16 14 C 0.50 8.55 6.53 -10.99 -0.07 8.48 16 15 O -0.51 -11.26 13.67 5.56 0.08 -11.18 16 16 C -0.07 -0.78 2.77 -92.99 -0.26 -1.03 16 17 H 0.12 0.99 8.06 -51.93 -0.42 0.57 16 18 C -0.13 -1.38 5.49 -28.05 -0.15 -1.53 16 19 C 0.52 7.38 7.37 -11.20 -0.08 7.29 16 20 O -0.52 -9.16 17.91 5.55 0.10 -9.06 16 21 N -0.66 -8.42 5.36 -10.02 -0.05 -8.47 16 22 C 0.17 2.14 6.50 -83.76 -0.54 1.60 16 23 C -0.15 -1.58 9.92 -39.40 -0.39 -1.97 16 24 C -0.09 -0.80 10.04 -39.60 -0.40 -1.20 16 25 C -0.14 -1.35 10.04 -39.54 -0.40 -1.75 16 26 C -0.07 -0.75 9.69 -39.62 -0.38 -1.13 16 27 C -0.10 -1.18 4.15 -104.47 -0.43 -1.61 16 28 C -0.10 -2.29 9.89 -39.79 -0.39 -2.68 16 29 C -0.22 -5.32 9.74 -39.26 -0.38 -5.70 16 30 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 31 H 0.12 3.32 6.19 -52.49 -0.32 3.00 16 32 H 0.10 2.51 6.38 -52.49 -0.33 2.18 16 33 H 0.39 5.21 7.98 -40.82 -0.33 4.89 16 34 H 0.11 1.09 7.17 -51.93 -0.37 0.72 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.41 4.68 8.83 -40.82 -0.36 4.32 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -34.83 356.67 -9.74 -44.57 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -4.65 Total: 14.19 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -6.12 Total: -17.47 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.51 Total: -40.19 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.18 Total: -20.25 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.83 -9.74 -44.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012973417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.103 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds