Wall clock time and date at job start Tue Mar 31 2020 05:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48496 * 109.47461 * 274.72540 * 3 2 1 5 5 H 1.48496 * 109.47265 * 34.72472 * 3 2 1 6 6 H 1.48500 * 109.47279 * 154.72319 * 3 2 1 7 7 C 1.39909 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99854 * 160.57309 * 7 2 1 9 9 C 1.41147 * 119.99671 * 340.58018 * 7 2 1 10 10 C 1.40873 * 120.16548 * 156.06339 * 9 7 2 11 11 C 1.36373 * 119.82751 * 180.02562 * 10 9 7 12 12 C 1.39476 * 120.17230 * 359.97438 * 11 10 9 13 13 N 1.39241 * 119.83209 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99853 * 147.05163 * 13 12 11 15 15 O 1.21280 * 119.99857 * 354.50698 * 14 13 12 16 16 C 1.50695 * 119.99940 * 174.78862 * 14 13 12 17 17 H 1.09000 * 109.46554 * 300.01740 * 16 14 13 18 18 C 1.52908 * 109.46387 * 59.99439 * 16 14 13 19 19 C 1.50502 * 109.90835 * 71.46025 * 18 16 14 20 20 O 1.21290 * 119.61281 * 215.19572 * 19 18 16 21 21 N 1.34562 * 120.76906 * 35.21673 * 19 18 16 22 22 C 1.39816 * 120.45415 * 359.11962 * 21 19 18 23 23 C 1.38863 * 120.19298 * 161.56481 * 22 21 19 24 24 C 1.38093 * 119.90726 * 179.97438 * 23 22 21 25 25 C 1.38305 * 120.08525 * 359.97438 * 24 23 22 26 26 C 1.38279 * 120.14773 * 0.03256 * 25 24 23 27 27 C 1.38088 * 120.02884 * 359.95128 * 26 25 24 28 28 C 1.39482 * 120.33236 * 0.25640 * 12 11 10 29 29 C 1.36380 * 120.16806 * 359.48578 * 28 12 11 30 30 H 0.96996 * 120.00599 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.08206 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.91085 * 179.97438 * 11 10 9 33 33 H 0.96998 * 120.00221 * 327.03967 * 13 12 11 34 34 H 1.09004 * 109.39842 * 191.59403 * 18 16 14 35 35 H 1.08999 * 109.39862 * 311.41503 * 18 16 14 36 36 H 0.96995 * 119.77031 * 179.13851 * 21 19 18 37 37 H 1.08005 * 120.04785 * 359.94498 * 23 22 21 38 38 H 1.07999 * 119.95935 * 179.97438 * 24 23 22 39 39 H 1.07999 * 119.92326 * 180.02562 * 25 24 23 40 40 H 1.08001 * 119.98508 * 179.97438 * 26 25 24 41 41 H 1.07997 * 119.91393 * 179.74293 * 28 12 11 42 42 H 1.08001 * 120.08445 * 180.25912 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3902 2.1042 -1.3952 5 1 1.4935 2.6218 0.7975 6 1 3.5865 1.4135 0.5978 7 6 2.0083 -1.2116 0.0005 8 1 3.0422 -1.2382 -0.3105 9 6 1.3628 -2.3990 0.4075 10 6 1.8335 -3.6494 -0.0392 11 6 1.2043 -4.7923 0.3579 12 6 0.0979 -4.7255 1.2044 13 7 -0.5395 -5.8969 1.6050 14 6 -1.1028 -5.9735 2.8270 15 8 -0.9693 -5.0609 3.6146 16 6 -1.8932 -7.1958 3.2170 17 1 -2.7319 -7.3199 2.5319 18 6 -0.9919 -8.4290 3.1476 19 6 0.0037 -8.4003 4.2758 20 8 1.1243 -8.8289 4.0974 21 7 -0.3349 -7.9051 5.4803 22 6 -1.6161 -7.3902 5.7001 23 6 -2.0947 -7.2372 6.9946 24 6 -3.3608 -6.7275 7.2049 25 6 -4.1515 -6.3692 6.1283 26 6 -3.6779 -6.5205 4.8380 27 6 -2.4126 -7.0293 4.6215 28 6 -0.3769 -3.4909 1.6471 29 6 0.2450 -2.3397 1.2627 30 1 -0.4851 0.8400 -0.0004 31 1 2.6899 -3.7026 -0.6951 32 1 1.5637 -5.7516 0.0159 33 1 -0.5783 -6.6577 1.0046 34 1 -1.6024 -9.3286 3.2262 35 1 -0.4593 -8.4350 2.1966 36 1 0.3143 -7.9052 6.2009 37 1 -1.4777 -7.5169 7.8359 38 1 -3.7340 -6.6086 8.2114 39 1 -5.1412 -5.9705 6.2958 40 1 -4.2978 -6.2402 3.9991 41 1 -1.2367 -3.4469 2.2991 42 1 -0.1212 -1.3847 1.6096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012973419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:26 Heat of formation + Delta-G solvation = -22.980665 kcal Electronic energy + Delta-G solvation = -27976.441161 eV Core-core repulsion = 24078.581168 eV Total energy + Delta-G solvation = -3897.859993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46364 -39.39752 -38.76495 -37.25748 -35.34665 -34.49941 -34.19507 -32.90118 -30.38384 -29.56080 -29.50248 -28.94679 -25.99915 -24.63309 -23.07507 -22.83733 -21.63711 -21.17075 -20.05673 -18.89094 -18.12830 -17.50485 -17.32982 -17.08415 -16.28662 -15.82750 -15.68405 -15.17986 -14.92687 -14.55858 -14.43594 -14.02388 -13.89652 -13.82291 -13.33274 -13.16795 -12.85925 -12.71438 -12.51012 -12.27468 -11.97686 -11.85351 -11.54757 -11.40892 -11.25054 -11.12727 -11.07546 -10.81758 -10.67594 -10.20406 -9.96274 -9.67099 -9.46529 -9.12774 -8.99862 -8.85402 -8.17523 -7.52926 -7.02320 -6.76187 -4.29729 1.03240 1.16526 2.39223 2.51718 2.86546 2.95814 3.06976 3.10138 3.13128 3.31102 3.47311 3.85133 3.92513 4.09436 4.29626 4.45494 4.62165 4.62902 4.83177 4.91516 5.10023 5.13148 5.20224 5.29370 5.37444 5.64342 5.70852 5.75518 5.95039 6.15585 6.19706 6.35164 6.37705 6.50627 6.69881 6.76766 6.96354 7.01657 7.03528 7.13363 7.27991 7.57717 7.65994 7.82012 7.94127 8.04562 8.18814 8.29657 8.60990 8.71879 8.87370 8.99313 10.15242 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.016175 B = 0.002926 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.666246 B = 9567.499551 C =10453.129789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.107 3.893 10 C -0.217 4.217 11 C -0.101 4.101 12 C -0.009 4.009 13 N -0.647 5.647 14 C 0.497 3.503 15 O -0.513 6.513 16 C -0.067 4.067 17 H 0.121 0.879 18 C -0.132 4.132 19 C 0.523 3.477 20 O -0.523 6.523 21 N -0.660 5.660 22 C 0.175 3.825 23 C -0.155 4.155 24 C -0.087 4.087 25 C -0.142 4.142 26 C -0.070 4.070 27 C -0.096 4.096 28 C -0.084 4.084 29 C -0.158 4.158 30 H 0.281 0.719 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.393 0.607 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.411 0.589 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 -14.549 9.228 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.104 3.896 10 C -0.237 4.237 11 C -0.122 4.122 12 C -0.101 4.101 13 N -0.290 5.290 14 C 0.282 3.718 15 O -0.388 6.388 16 C -0.089 4.089 17 H 0.139 0.861 18 C -0.172 4.172 19 C 0.311 3.689 20 O -0.398 6.398 21 N -0.303 5.303 22 C 0.078 3.922 23 C -0.175 4.175 24 C -0.106 4.106 25 C -0.161 4.161 26 C -0.089 4.089 27 C -0.099 4.099 28 C -0.104 4.104 29 C -0.178 4.178 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.227 0.773 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.249 0.751 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.467 -14.004 9.486 19.384 hybrid contribution 0.544 0.493 -0.031 0.735 sum -8.923 -13.511 9.455 18.750 Atomic orbital electron populations 1.69849 1.07656 1.29347 1.34373 1.25933 0.94700 1.01414 0.92195 0.86329 0.80890 0.80683 0.79034 1.19555 1.19978 1.18361 1.19557 0.98755 0.91547 1.38821 0.90336 1.17656 0.91238 0.92042 0.88656 1.20530 1.03895 0.92475 1.06763 1.20028 0.94731 0.97215 1.00178 1.17125 0.99255 0.84527 1.09205 1.42948 1.55247 1.15681 1.15128 1.20205 0.81147 0.88313 0.82116 1.90731 1.58934 1.39232 1.49914 1.20270 0.99012 0.93688 0.95891 0.86106 1.21748 0.97396 0.99425 0.98649 1.20565 0.88694 0.76154 0.83475 1.90793 1.21329 1.45735 1.81937 1.43536 1.13061 1.59484 1.14268 1.17556 0.84540 0.96135 0.93920 1.20713 0.97384 1.04983 0.94441 1.20942 0.93286 0.97150 0.99188 1.21059 1.00516 1.02240 0.92288 1.20821 0.94146 0.96267 0.97628 1.18876 0.95372 1.03523 0.92130 1.20383 0.99219 0.91262 0.99517 1.20949 0.99495 0.96799 1.00511 0.90793 0.88613 0.89173 0.77342 0.86701 0.86870 0.75066 0.85519 0.85545 0.85665 0.85365 0.88119 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.45 11.01 55.55 0.61 -19.83 16 2 C 0.08 1.92 5.10 -17.34 -0.09 1.83 16 3 Si 0.91 18.76 29.60 -169.99 -5.03 13.73 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.24 9.03 -37.85 -0.34 -12.58 16 8 H 0.08 2.01 7.92 -52.49 -0.42 1.60 16 9 C 0.11 2.89 5.58 -106.80 -0.60 2.30 16 10 C -0.22 -5.34 9.74 -39.26 -0.38 -5.72 16 11 C -0.10 -2.27 9.89 -39.79 -0.39 -2.66 16 12 C -0.01 -0.20 6.29 -83.57 -0.53 -0.73 16 13 N -0.65 -11.27 5.17 -9.74 -0.05 -11.32 16 14 C 0.50 8.48 6.52 -10.99 -0.07 8.41 16 15 O -0.51 -11.07 13.68 5.56 0.08 -11.00 16 16 C -0.07 -0.77 2.77 -92.99 -0.26 -1.03 16 17 H 0.12 1.00 8.06 -51.93 -0.42 0.58 16 18 C -0.13 -1.36 5.49 -28.03 -0.15 -1.51 16 19 C 0.52 7.21 7.37 -11.18 -0.08 7.13 16 20 O -0.52 -8.98 17.91 5.55 0.10 -8.88 16 21 N -0.66 -8.17 5.36 -10.01 -0.05 -8.22 16 22 C 0.17 2.09 6.50 -83.76 -0.54 1.54 16 23 C -0.15 -1.54 9.92 -39.40 -0.39 -1.93 16 24 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16 25 C -0.14 -1.33 10.04 -39.54 -0.40 -1.73 16 26 C -0.07 -0.74 9.69 -39.62 -0.38 -1.13 16 27 C -0.10 -1.16 4.15 -104.47 -0.43 -1.59 16 28 C -0.08 -2.10 8.57 -39.79 -0.34 -2.44 16 29 C -0.16 -4.26 8.65 -39.26 -0.34 -4.60 16 30 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 31 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.39 5.27 7.98 -40.82 -0.33 4.94 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.11 1.08 7.16 -51.93 -0.37 0.71 16 36 H 0.41 4.49 8.83 -40.82 -0.36 4.13 16 37 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.10 2.51 6.39 -52.49 -0.34 2.17 16 42 H 0.12 3.31 6.17 -52.49 -0.32 2.99 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -34.24 356.70 -9.74 -43.98 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -4.65 Total: 13.79 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -6.12 Total: -17.62 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.51 Total: -39.37 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.18 Total: -19.88 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.24 -9.74 -43.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012973419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.996 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds