Wall clock time and date at job start Tue Mar 31 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35486 * 124.78540 * 2 1 4 4 C 1.36388 * 109.76511 * 179.97438 * 3 2 1 5 5 C 1.46881 * 126.76999 * 179.97438 * 4 3 2 6 6 O 1.21693 * 120.00120 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00533 * 0.02865 * 5 4 3 8 8 C 1.39927 * 120.00730 * 175.49014 * 7 5 4 9 9 C 1.38937 * 120.00041 * 35.13527 * 8 7 5 10 10 C 1.37999 * 120.00019 * 180.02562 * 9 8 7 11 11 C 1.38916 * 119.99892 * 0.02562 * 10 9 8 12 12 O 1.35776 * 119.99526 * 179.97438 * 11 10 9 13 13 C 1.34808 * 117.00040 * 5.35391 * 12 11 10 14 14 H 1.08000 * 120.00457 * 354.95774 * 13 12 11 15 15 C 1.38635 * 120.00045 * 174.95948 * 13 12 11 16 16 N 1.31575 * 119.99960 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00007 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47093 * 90.00099 * 17 15 13 19 19 H 1.48499 * 109.47129 * 209.99955 * 17 15 13 20 20 H 1.48502 * 109.47399 * 330.00356 * 17 15 13 21 21 C 1.38912 * 120.00429 * 0.25592 * 11 10 9 22 22 C 1.37998 * 120.00254 * 359.48561 * 21 11 10 23 23 C 1.47449 * 106.45828 * 0.26427 * 4 3 2 24 24 C 1.39278 * 133.99991 * 179.71869 * 23 4 3 25 25 C 1.37759 * 119.67019 * 180.02562 * 24 23 4 26 26 C 1.38759 * 120.29869 * 359.97438 * 25 24 23 27 27 C 1.37773 * 120.63658 * 359.56493 * 26 25 24 28 28 C 1.37960 * 124.78905 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46942 * 90.02564 * 1 2 3 30 30 H 1.08995 * 109.46927 * 210.02306 * 1 2 3 31 31 H 1.09000 * 109.46760 * 330.02363 * 1 2 3 32 32 H 1.08001 * 125.11673 * 359.95429 * 3 2 1 33 33 H 0.97001 * 119.99341 * 355.48876 * 7 5 4 34 34 H 1.08001 * 120.00071 * 359.97438 * 9 8 7 35 35 H 1.07995 * 120.00443 * 179.97438 * 10 9 8 36 36 H 0.96994 * 119.99988 * 179.97438 * 16 15 13 37 37 H 1.08005 * 119.99567 * 179.72202 * 21 11 10 38 38 H 1.08005 * 119.99769 * 180.23224 * 22 21 11 39 39 H 1.07999 * 120.16840 * 0.04364 * 24 23 4 40 40 H 1.07990 * 119.84970 * 180.02562 * 25 24 23 41 41 H 1.07992 * 119.67680 * 180.02562 * 26 25 24 42 42 H 1.07991 * 120.03225 * 179.89832 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2380 1.1127 0.0000 4 6 3.5553 0.7593 0.0006 5 6 4.7094 1.6678 0.0002 6 8 5.8394 1.2161 0.0004 7 7 4.5171 3.0018 -0.0001 8 6 5.6128 3.8668 0.0948 9 6 6.8178 3.5305 -0.5095 10 6 7.8986 4.3834 -0.4154 11 6 7.7819 5.5779 0.2840 12 8 8.8455 6.4168 0.3770 13 6 9.9491 6.0857 -0.3229 14 1 9.9888 5.1479 -0.8570 15 6 11.0331 6.9492 -0.3571 16 7 10.9847 8.0920 0.2931 17 14 12.5626 6.4902 -1.3264 18 1 12.4356 6.9918 -2.7184 19 1 13.7556 7.1010 -0.6871 20 1 12.7124 5.0128 -1.3445 21 6 6.5789 5.9115 0.8932 22 6 5.4964 5.0613 0.7947 23 6 3.5923 -0.7147 -0.0056 24 6 4.6182 -1.6568 -0.0128 25 6 4.3108 -2.9996 -0.0178 26 6 2.9868 -3.4148 -0.0151 27 6 1.9623 -2.4938 0.0016 28 6 2.2522 -1.1330 0.0005 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.8669 2.1270 -0.0007 33 1 3.6190 3.3622 -0.0663 34 1 6.9089 2.6012 -1.0522 35 1 8.8354 4.1218 -0.8847 36 1 11.7433 8.6960 0.2694 37 1 6.4896 6.8382 1.4407 38 1 4.5600 5.3225 1.2652 39 1 5.6494 -1.3361 -0.0143 40 1 5.1039 -3.7325 -0.0230 41 1 2.7573 -4.4700 -0.0186 42 1 0.9353 -2.8277 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014940889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:58 Heat of formation + Delta-G solvation = 37.178166 kcal Electronic energy + Delta-G solvation = -26759.633939 eV Core-core repulsion = 22864.382629 eV Total energy + Delta-G solvation = -3895.251310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76322 -39.77161 -38.46614 -37.34635 -36.36576 -33.90901 -33.15222 -32.12089 -30.54697 -30.14637 -29.47418 -28.05752 -26.73448 -25.21218 -23.39008 -22.79888 -22.12873 -21.47049 -20.94240 -19.55368 -18.22757 -17.76095 -17.16670 -16.83956 -16.11155 -15.89498 -15.86261 -15.68610 -14.78090 -14.46461 -14.35573 -14.18437 -13.97240 -13.72689 -13.51713 -13.44530 -13.17747 -13.03168 -12.88717 -12.80355 -12.48221 -11.85644 -11.71438 -11.61093 -11.49914 -11.45723 -11.14754 -10.97049 -10.70364 -10.39301 -9.83995 -9.65650 -9.60276 -9.11084 -8.64612 -8.51610 -8.14334 -7.94024 -6.86434 -6.40016 -3.97275 0.76867 1.34102 1.80113 2.23346 2.31551 2.39347 3.17395 3.18738 3.23624 3.38755 3.46928 3.83072 4.02243 4.22413 4.29510 4.42478 4.62429 4.66211 4.77090 4.90944 4.93149 4.99261 5.14471 5.25579 5.31094 5.33940 5.46595 5.50660 5.73121 5.82519 5.87107 6.19324 6.20503 6.24829 6.33616 6.41593 6.47265 6.50151 6.78665 6.82028 6.89943 6.94343 7.08597 7.17021 7.37111 7.49974 7.81003 7.85572 8.05597 8.52520 9.06053 9.76005 10.78058 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.002200 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.309252 B =12726.717164 C =13856.698939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.474 5.474 3 C 0.102 3.898 4 C -0.218 4.218 5 C 0.581 3.419 6 O -0.527 6.527 7 N -0.660 5.660 8 C 0.038 3.962 9 C -0.063 4.063 10 C -0.220 4.220 11 C 0.146 3.854 12 O -0.178 6.178 13 C -0.389 4.389 14 H 0.092 0.908 15 C 0.038 3.962 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.267 1.267 21 C -0.179 4.179 22 C -0.094 4.094 23 C -0.062 4.062 24 C -0.060 4.060 25 C -0.144 4.144 26 C -0.100 4.100 27 C -0.130 4.130 28 C 0.086 3.914 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.177 0.823 33 H 0.397 0.603 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.269 0.731 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.476 -17.921 -1.254 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.156 5.156 3 C -0.029 4.029 4 C -0.229 4.229 5 C 0.370 3.630 6 O -0.403 6.403 7 N -0.304 5.304 8 C -0.054 4.054 9 C -0.083 4.083 10 C -0.240 4.240 11 C 0.092 3.908 12 O -0.081 6.081 13 C -0.465 4.465 14 H 0.110 0.890 15 C -0.166 4.166 16 N -0.499 5.499 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.191 1.191 21 C -0.199 4.199 22 C -0.114 4.114 23 C -0.067 4.067 24 C -0.078 4.078 25 C -0.163 4.163 26 C -0.119 4.119 27 C -0.150 4.150 28 C -0.018 4.018 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.194 0.806 33 H 0.231 0.769 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.832 -17.853 -1.072 29.003 hybrid contribution 0.087 0.017 -0.489 0.497 sum -22.745 -17.836 -1.560 28.946 Atomic orbital electron populations 1.22057 0.76595 1.04639 1.03452 1.43561 1.06308 1.04324 1.61404 1.22068 0.89848 0.91511 0.99482 1.20068 0.91935 0.92609 1.18275 1.17225 0.87950 0.81261 0.76541 1.90779 1.23846 1.76370 1.49346 1.43003 1.08837 1.05043 1.73494 1.17225 0.88830 0.93043 1.06342 1.20887 0.91605 0.98761 0.97073 1.21116 0.99991 0.95856 1.07026 1.19417 0.88337 0.89796 0.93264 1.83970 1.19171 1.44076 1.60894 1.21337 0.90741 1.05345 1.29126 0.89022 1.25278 0.98830 0.94964 0.97492 1.70046 1.31419 1.08918 1.39543 0.85717 0.79707 0.78975 0.79098 1.19908 1.20305 1.19133 1.19976 0.91107 1.01689 1.07086 1.20342 0.98123 0.94120 0.98832 1.18748 0.92066 0.91515 1.04341 1.20779 0.99289 0.91541 0.96206 1.21002 0.96411 0.95494 1.03375 1.20821 0.92315 0.98818 0.99936 1.19955 0.99517 0.88865 1.06668 1.18253 0.89725 0.88223 1.05612 0.90794 0.89780 0.89464 0.80625 0.76906 0.85584 0.85221 0.92095 0.86120 0.86828 0.84660 0.85701 0.85689 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 10.99 59.85 0.66 0.93 16 2 N -0.47 -3.88 3.14 -121.59 -0.38 -4.27 16 3 C 0.10 0.90 10.76 -16.61 -0.18 0.72 16 4 C -0.22 -2.82 6.27 -103.32 -0.65 -3.47 16 5 C 0.58 9.25 7.64 -12.76 -0.10 9.15 16 6 O -0.53 -10.43 13.59 5.20 0.07 -10.36 16 7 N -0.66 -9.46 5.32 -10.94 -0.06 -9.51 16 8 C 0.04 0.69 6.30 -83.65 -0.53 0.17 16 9 C -0.06 -1.32 8.69 -39.41 -0.34 -1.66 16 10 C -0.22 -5.09 9.16 -39.42 -0.36 -5.46 16 11 C 0.15 3.60 6.65 -39.08 -0.26 3.34 16 12 O -0.18 -5.14 9.75 0.03 0.00 -5.14 16 13 C -0.39 -11.10 9.48 30.88 0.29 -10.81 16 14 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.64 13.67 55.48 0.76 -24.88 16 17 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 C -0.18 -3.77 9.98 -39.42 -0.39 -4.17 16 22 C -0.09 -1.66 9.96 -39.41 -0.39 -2.05 16 23 C -0.06 -0.83 6.27 -104.95 -0.66 -1.49 16 24 C -0.06 -0.78 9.85 -39.37 -0.39 -1.17 16 25 C -0.14 -1.48 10.03 -39.56 -0.40 -1.87 16 26 C -0.10 -0.87 10.01 -39.56 -0.40 -1.27 16 27 C -0.13 -1.14 9.91 -39.42 -0.39 -1.53 16 28 C 0.09 0.91 6.79 -83.97 -0.57 0.34 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.23 8.03 -51.93 -0.42 -0.19 16 31 H 0.09 0.16 8.13 -51.93 -0.42 -0.27 16 32 H 0.18 0.83 7.39 -52.49 -0.39 0.44 16 33 H 0.40 3.96 7.71 -40.82 -0.31 3.64 16 34 H 0.13 2.63 6.22 -52.49 -0.33 2.30 16 35 H 0.13 3.02 5.63 -52.49 -0.30 2.73 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 39 H 0.14 1.92 7.45 -52.49 -0.39 1.53 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.72 8.01 -52.49 -0.42 0.30 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -36.33 363.04 -8.81 -45.14 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.50 Total: 6.90 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -5.15 Total: -19.32 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.32 Total: -38.66 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.07 Total: -15.51 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.33 -8.81 -45.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014940889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.314 kcal (2) G-P(sol) polarization free energy of solvation -36.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds