Wall clock time and date at job start Tue Mar 31 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35486 * 124.78540 * 2 1 4 4 C 1.36388 * 109.76511 * 179.97438 * 3 2 1 5 5 C 1.46881 * 126.76999 * 179.97438 * 4 3 2 6 6 O 1.21693 * 120.00120 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00533 * 0.02865 * 5 4 3 8 8 C 1.39927 * 120.00730 * 175.49014 * 7 5 4 9 9 C 1.38937 * 120.00041 * 35.13527 * 8 7 5 10 10 C 1.37999 * 120.00019 * 180.02562 * 9 8 7 11 11 C 1.38916 * 119.99892 * 0.02562 * 10 9 8 12 12 O 1.35776 * 119.99526 * 179.97438 * 11 10 9 13 13 C 1.34808 * 117.00040 * 5.35391 * 12 11 10 14 14 H 1.08000 * 120.00457 * 354.95774 * 13 12 11 15 15 C 1.38635 * 120.00045 * 174.95948 * 13 12 11 16 16 N 1.31575 * 119.99960 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00007 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47093 * 90.00099 * 17 15 13 19 19 H 1.48499 * 109.47129 * 209.99955 * 17 15 13 20 20 H 1.48502 * 109.47399 * 330.00356 * 17 15 13 21 21 C 1.38912 * 120.00429 * 0.25592 * 11 10 9 22 22 C 1.37998 * 120.00254 * 359.48561 * 21 11 10 23 23 C 1.47449 * 106.45828 * 0.26427 * 4 3 2 24 24 C 1.39278 * 133.99991 * 179.71869 * 23 4 3 25 25 C 1.37759 * 119.67019 * 180.02562 * 24 23 4 26 26 C 1.38759 * 120.29869 * 359.97438 * 25 24 23 27 27 C 1.37773 * 120.63658 * 359.56493 * 26 25 24 28 28 C 1.37960 * 124.78905 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46942 * 90.02564 * 1 2 3 30 30 H 1.08995 * 109.46927 * 210.02306 * 1 2 3 31 31 H 1.09000 * 109.46760 * 330.02363 * 1 2 3 32 32 H 1.08001 * 125.11673 * 359.95429 * 3 2 1 33 33 H 0.97001 * 119.99341 * 355.48876 * 7 5 4 34 34 H 1.08001 * 120.00071 * 359.97438 * 9 8 7 35 35 H 1.07995 * 120.00443 * 179.97438 * 10 9 8 36 36 H 0.96994 * 119.99988 * 179.97438 * 16 15 13 37 37 H 1.08005 * 119.99567 * 179.72202 * 21 11 10 38 38 H 1.08005 * 119.99769 * 180.23224 * 22 21 11 39 39 H 1.07999 * 120.16840 * 0.04364 * 24 23 4 40 40 H 1.07990 * 119.84970 * 180.02562 * 25 24 23 41 41 H 1.07992 * 119.67680 * 180.02562 * 26 25 24 42 42 H 1.07991 * 120.03225 * 179.89832 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2380 1.1127 0.0000 4 6 3.5553 0.7593 0.0006 5 6 4.7094 1.6678 0.0002 6 8 5.8394 1.2161 0.0004 7 7 4.5171 3.0018 -0.0001 8 6 5.6128 3.8668 0.0948 9 6 6.8178 3.5305 -0.5095 10 6 7.8986 4.3834 -0.4154 11 6 7.7819 5.5779 0.2840 12 8 8.8455 6.4168 0.3770 13 6 9.9491 6.0857 -0.3229 14 1 9.9888 5.1479 -0.8570 15 6 11.0331 6.9492 -0.3571 16 7 10.9847 8.0920 0.2931 17 14 12.5626 6.4902 -1.3264 18 1 12.4356 6.9918 -2.7184 19 1 13.7556 7.1010 -0.6871 20 1 12.7124 5.0128 -1.3445 21 6 6.5789 5.9115 0.8932 22 6 5.4964 5.0613 0.7947 23 6 3.5923 -0.7147 -0.0056 24 6 4.6182 -1.6568 -0.0128 25 6 4.3108 -2.9996 -0.0178 26 6 2.9868 -3.4148 -0.0151 27 6 1.9623 -2.4938 0.0016 28 6 2.2522 -1.1330 0.0005 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.8669 2.1270 -0.0007 33 1 3.6190 3.3622 -0.0663 34 1 6.9089 2.6012 -1.0522 35 1 8.8354 4.1218 -0.8847 36 1 11.7433 8.6960 0.2694 37 1 6.4896 6.8382 1.4407 38 1 4.5600 5.3225 1.2652 39 1 5.6494 -1.3361 -0.0143 40 1 5.1039 -3.7325 -0.0230 41 1 2.7573 -4.4700 -0.0186 42 1 0.9353 -2.8277 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014940889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:58 Heat of formation + Delta-G solvation = 13.712634 kcal Electronic energy + Delta-G solvation = -26760.651481 eV Core-core repulsion = 22864.382629 eV Total energy + Delta-G solvation = -3896.268852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.52642 -41.23500 -40.14058 -38.06382 -38.05351 -35.37163 -34.22533 -33.81428 -31.84818 -31.23952 -30.47434 -29.30453 -27.67347 -27.06481 -24.46052 -23.83615 -23.61212 -22.45035 -22.17072 -20.71805 -19.91191 -19.21825 -18.50795 -18.07142 -17.25661 -16.86026 -16.61139 -16.43402 -16.30510 -16.15759 -15.56628 -15.43932 -15.32296 -15.11614 -14.88156 -14.70520 -14.50388 -14.11604 -13.74812 -13.62791 -13.56098 -13.27134 -13.24398 -13.17746 -12.69922 -12.57176 -12.43939 -12.23539 -12.13582 -11.93614 -11.40675 -11.13716 -10.81896 -10.63859 -10.49907 -9.82386 -9.26336 -8.79052 -8.51249 -8.46587 -6.13276 -0.02614 0.48310 0.55114 0.63196 1.06248 1.34476 1.43269 1.51490 1.73934 2.17254 2.21100 2.37745 2.83066 2.96500 3.16424 3.52408 3.67468 3.69122 3.78273 4.08314 4.13276 4.14753 4.26488 4.30254 4.48815 4.49697 4.51040 4.59991 4.68124 4.69435 4.77625 4.79527 4.81684 5.07698 5.11743 5.15492 5.36878 5.44978 5.47527 5.56794 5.61733 5.69687 5.70014 5.71490 6.02747 6.13610 6.18498 6.24142 6.64536 6.97865 7.33227 7.77387 8.75849 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.002200 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.309252 B =12726.717164 C =13856.698939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.465 5.465 3 C 0.145 3.855 4 C -0.274 4.274 5 C 0.581 3.419 6 O -0.579 6.579 7 N -0.645 5.645 8 C 0.066 3.934 9 C -0.078 4.078 10 C -0.230 4.230 11 C 0.106 3.894 12 O -0.226 6.226 13 C -0.414 4.414 14 H 0.095 0.905 15 C -0.020 4.020 16 N -0.917 5.917 17 Si 1.016 2.984 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.179 4.179 22 C -0.075 4.075 23 C -0.094 4.094 24 C -0.104 4.104 25 C -0.141 4.141 26 C -0.105 4.105 27 C -0.118 4.118 28 C 0.071 3.929 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.225 0.775 33 H 0.424 0.576 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.273 0.727 37 H 0.131 0.869 38 H 0.171 0.829 39 H 0.102 0.898 40 H 0.137 0.863 41 H 0.158 0.842 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.651 -19.617 -1.384 34.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.144 5.144 3 C 0.011 3.989 4 C -0.285 4.285 5 C 0.373 3.627 6 O -0.460 6.460 7 N -0.292 5.292 8 C -0.028 4.028 9 C -0.099 4.099 10 C -0.250 4.250 11 C 0.055 3.945 12 O -0.133 6.133 13 C -0.490 4.490 14 H 0.112 0.888 15 C -0.218 4.218 16 N -0.555 5.555 17 Si 0.835 3.165 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.199 4.199 22 C -0.095 4.095 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.160 4.160 26 C -0.124 4.124 27 C -0.138 4.138 28 C -0.033 4.033 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.241 0.759 33 H 0.263 0.737 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.189 0.811 39 H 0.120 0.880 40 H 0.155 0.845 41 H 0.176 0.824 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -28.134 -19.599 -1.206 34.309 hybrid contribution 1.229 0.266 -0.415 1.324 sum -26.905 -19.333 -1.621 33.170 Atomic orbital electron populations 1.22488 0.73246 1.06743 1.05101 1.43937 1.08110 1.03265 1.59111 1.22683 0.88244 0.93491 0.94495 1.19809 0.92633 0.92080 1.23968 1.17753 0.88290 0.81674 0.74992 1.90759 1.26258 1.77217 1.51745 1.42839 1.08967 1.04215 1.73139 1.17377 0.88890 0.93212 1.03331 1.20933 0.92510 0.98285 0.98127 1.21081 1.00314 0.96189 1.07367 1.19944 0.89030 0.90219 0.95286 1.83930 1.20368 1.45995 1.63010 1.21746 0.91553 1.05942 1.29742 0.88763 1.26512 1.02076 0.94712 0.98490 1.70172 1.32869 1.10461 1.42019 0.84633 0.75123 0.78998 0.77747 1.18609 1.19205 1.18331 1.20342 0.90650 1.02697 1.06163 1.20793 0.99073 0.92438 0.97191 1.19084 0.93603 0.92081 1.05034 1.20722 0.98178 0.93317 1.00026 1.21249 0.98136 0.94534 1.02098 1.21212 0.91313 1.00661 0.99242 1.20414 1.01259 0.87997 1.04095 1.18460 0.88988 0.89678 1.06136 0.89289 0.88495 0.86770 0.75852 0.73733 0.86154 0.86809 0.91769 0.85089 0.81150 0.88013 0.84486 0.82406 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.09 10.99 127.77 1.40 1.49 16 2 N -0.46 -5.50 3.14 -538.59 -1.69 -7.19 16 3 C 0.15 1.93 10.76 83.70 0.90 2.83 16 4 C -0.27 -6.76 6.27 -19.02 -0.12 -6.88 16 5 C 0.58 18.36 7.64 86.51 0.66 19.03 16 6 O -0.58 -24.31 13.59 -4.33 -0.06 -24.37 16 7 N -0.65 -16.91 5.32 -306.75 -1.63 -18.54 16 8 C 0.07 2.30 6.30 38.18 0.24 2.54 16 9 C -0.08 -3.38 8.69 22.38 0.19 -3.18 16 10 C -0.23 -11.30 9.16 22.38 0.20 -11.09 16 11 C 0.11 5.50 6.65 22.59 0.15 5.65 16 12 O -0.23 -14.00 9.75 -22.81 -0.22 -14.23 16 13 C -0.41 -25.17 9.48 67.91 0.64 -24.52 16 14 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 15 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 16 N -0.92 -57.21 13.67 21.61 0.30 -56.91 16 17 Si 1.02 44.82 29.55 68.60 2.03 46.85 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 21 C -0.18 -7.51 9.98 22.37 0.22 -7.29 16 22 C -0.08 -2.45 9.96 22.38 0.22 -2.22 16 23 C -0.09 -2.49 6.27 -20.08 -0.13 -2.62 16 24 C -0.10 -2.91 9.85 22.41 0.22 -2.69 16 25 C -0.14 -2.92 10.03 22.28 0.22 -2.70 16 26 C -0.11 -1.58 10.01 22.28 0.22 -1.36 16 27 C -0.12 -1.66 9.91 22.37 0.22 -1.44 16 28 C 0.07 1.33 6.79 38.92 0.26 1.59 16 29 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.10 -0.04 8.03 -2.39 -0.02 -0.06 16 31 H 0.11 -0.38 8.13 -2.39 -0.02 -0.40 16 32 H 0.23 0.57 7.39 -2.91 -0.02 0.55 16 33 H 0.42 6.44 7.71 -92.71 -0.72 5.72 16 34 H 0.12 5.33 6.22 -2.91 -0.02 5.31 16 35 H 0.11 5.81 5.63 -2.91 -0.02 5.79 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.13 5.18 8.06 -2.91 -0.02 5.16 16 38 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.10 3.38 7.45 -2.91 -0.02 3.36 16 40 H 0.14 2.29 8.06 -2.92 -0.02 2.27 16 41 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.15 1.02 8.01 -2.92 -0.02 0.99 16 Total: -1.00 -90.48 363.04 5.30 -85.18 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.37 Total: 22.80 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 6.22 Total: -33.59 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -3.03 Total: -82.65 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.28 Total: -38.59 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -90.48 5.30 -85.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014940889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.893 kcal (2) G-P(sol) polarization free energy of solvation -90.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds