Wall clock time and date at job start Tue Mar 31 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99717 * 2 1 4 4 H 1.48500 * 109.47342 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47272 * 300.00123 * 3 2 1 6 6 H 1.48507 * 109.46964 * 60.00285 * 3 2 1 7 7 C 1.37877 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99808 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47020 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00045 * 90.00110 * 10 9 7 12 12 O 1.21592 * 120.00361 * 185.92162 * 11 10 9 13 13 N 1.34776 * 120.00255 * 5.91476 * 11 10 9 14 14 C 1.40005 * 120.00540 * 186.89773 * 13 11 10 15 15 C 1.38846 * 120.07138 * 330.05758 * 14 13 11 16 16 C 1.38122 * 119.94132 * 179.97438 * 15 14 13 17 17 C 1.38292 * 120.09283 * 359.97437 * 16 15 14 18 18 C 1.38261 * 120.14490 * 0.02562 * 17 16 15 19 19 C 1.38221 * 120.05880 * 0.02562 * 18 17 16 20 20 Cl 1.73605 * 120.04725 * 179.97438 * 19 18 17 21 21 C 1.46504 * 119.99690 * 269.99534 * 10 9 7 22 22 C 1.52992 * 109.47168 * 241.14176 * 21 10 9 23 23 C 1.53004 * 109.47150 * 180.02562 * 22 21 10 24 24 C 1.52992 * 109.47086 * 60.00216 * 23 22 21 25 25 C 1.53004 * 109.46986 * 300.00232 * 24 23 22 26 26 C 1.52994 * 109.47400 * 59.99958 * 25 24 23 27 27 H 0.97003 * 120.00672 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47209 * 59.99703 * 9 7 2 29 29 H 1.09003 * 109.47226 * 299.99650 * 9 7 2 30 30 H 0.97001 * 120.00126 * 6.90556 * 13 11 10 31 31 H 1.07998 * 120.02892 * 359.94801 * 15 14 13 32 32 H 1.07999 * 119.95231 * 179.97438 * 16 15 14 33 33 H 1.07994 * 119.92635 * 180.02562 * 17 16 15 34 34 H 1.08001 * 119.96781 * 179.71973 * 18 17 16 35 35 H 1.09004 * 109.47274 * 1.14629 * 21 10 9 36 36 H 1.08994 * 109.47308 * 300.00546 * 22 21 10 37 37 H 1.09005 * 109.46938 * 60.00918 * 22 21 10 38 38 H 1.09004 * 109.47007 * 300.00278 * 23 22 21 39 39 H 1.08994 * 109.47180 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.47254 * 180.02562 * 24 23 22 41 41 H 1.09004 * 109.47147 * 60.00148 * 24 23 22 42 42 H 1.08994 * 109.47024 * 299.99773 * 25 24 23 43 43 H 1.09008 * 109.46731 * 180.02562 * 25 24 23 44 44 H 1.08994 * 109.47183 * 179.97438 * 26 25 24 45 45 H 1.09004 * 109.47005 * 59.99917 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 2.6410 -4.1258 1.1640 12 8 3.5106 -4.9757 1.1661 13 7 2.1152 -3.6970 2.3285 14 6 2.6665 -4.1206 3.5437 15 6 3.2738 -5.3658 3.6356 16 6 3.8173 -5.7809 4.8357 17 6 3.7576 -4.9578 5.9454 18 6 3.1537 -3.7171 5.8581 19 6 2.6070 -3.2961 4.6604 20 17 1.8481 -1.7385 4.5512 21 6 2.6791 -4.1682 -1.2720 22 6 2.2764 -5.6412 -1.3668 23 6 2.7740 -6.2216 -2.6922 24 6 4.2979 -6.1042 -2.7602 25 6 4.7006 -4.6311 -2.6653 26 6 4.2030 -4.0507 -1.3400 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5562 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 1.3547 -3.0949 2.3247 31 1 3.3210 -6.0094 2.7697 32 1 4.2894 -6.7495 4.9075 33 1 4.1837 -5.2848 6.8823 34 1 3.1047 -3.0785 6.7277 35 1 2.2344 -3.6159 -2.0999 36 1 2.7210 -6.1934 -0.5390 37 1 1.1907 -5.7249 -1.3180 38 1 2.3297 -5.6694 -3.5203 39 1 2.4867 -7.2708 -2.7599 40 1 4.6523 -6.5173 -3.7046 41 1 4.7422 -6.6564 -1.9321 42 1 4.2563 -4.0790 -3.4934 43 1 5.7864 -4.5475 -2.7142 44 1 4.4903 -3.0015 -1.2722 45 1 4.6474 -4.6030 -0.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016450346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:01 Heat of formation + Delta-G solvation = -20.449812 kcal Electronic energy + Delta-G solvation = -27831.764738 eV Core-core repulsion = 24067.414736 eV Total energy + Delta-G solvation = -3764.350002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.45951 -38.93273 -37.37217 -36.10726 -34.84348 -34.23530 -32.57426 -30.49790 -30.37705 -29.90123 -28.59691 -26.80448 -23.40586 -22.86886 -22.56880 -22.19649 -21.59060 -19.66483 -19.26229 -17.70144 -16.80582 -16.50454 -16.26069 -15.45121 -15.13883 -14.65256 -14.42422 -14.27902 -13.92062 -13.84434 -13.80675 -13.42335 -13.35029 -13.13577 -12.49697 -12.26562 -12.07387 -11.97446 -11.82309 -11.51796 -11.38848 -11.21079 -11.07374 -10.97805 -10.81069 -10.73362 -10.58973 -10.46549 -10.22657 -10.16533 -9.93706 -9.78127 -9.58186 -9.01978 -8.60774 -8.55527 -7.95279 -7.53889 -6.21412 -4.28400 1.35736 1.52064 2.44057 3.19967 3.20739 3.29353 3.35207 3.63042 4.05089 4.29033 4.47851 4.98690 5.05602 5.12137 5.12473 5.13361 5.24771 5.37895 5.52457 5.61101 5.63960 5.67504 5.83599 5.87862 5.93163 5.95138 6.03427 6.07972 6.28325 6.33666 6.36458 6.37074 6.43932 6.56499 6.62428 6.63743 6.68828 6.77451 6.81540 6.91008 7.08189 7.25702 7.36258 7.69539 7.74663 8.00004 8.49402 8.81223 9.16187 9.40543 10.85082 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.007591 B = 0.006118 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.594527 B = 4575.633417 C = 7521.846224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.240 3.760 10 N -0.604 5.604 11 C 0.713 3.287 12 O -0.595 6.595 13 N -0.679 5.679 14 C 0.195 3.805 15 C -0.125 4.125 16 C -0.100 4.100 17 C -0.143 4.143 18 C -0.093 4.093 19 C -0.079 4.079 20 Cl -0.058 7.058 21 C 0.177 3.823 22 C -0.135 4.135 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.137 4.137 27 H 0.265 0.735 28 H 0.040 0.960 29 H 0.027 0.973 30 H 0.418 0.582 31 H 0.160 0.840 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.538 -10.667 4.324 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.120 3.880 10 N -0.336 5.336 11 C 0.416 3.584 12 O -0.477 6.477 13 N -0.326 5.326 14 C 0.096 3.904 15 C -0.145 4.145 16 C -0.118 4.118 17 C -0.163 4.163 18 C -0.113 4.113 19 C -0.109 4.109 20 Cl -0.029 7.029 21 C 0.073 3.927 22 C -0.174 4.174 23 C -0.150 4.150 24 C -0.155 4.155 25 C -0.152 4.152 26 C -0.175 4.175 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.259 0.741 31 H 0.177 0.823 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.856 -10.918 4.156 12.652 hybrid contribution -0.140 1.779 0.014 1.785 sum 4.716 -9.139 4.170 11.097 Atomic orbital electron populations 1.69917 1.05944 1.27224 1.49852 1.24904 0.94806 0.99214 0.94646 0.86508 0.80318 0.83401 0.77739 1.19610 1.20827 1.20822 1.21500 0.93683 0.90212 1.51766 0.91952 1.19392 0.87449 0.83058 0.98114 1.47547 1.47345 1.35684 1.03053 1.15746 0.81094 0.81175 0.80411 1.90689 1.34600 1.36387 1.85994 1.42991 1.35349 1.51475 1.02832 1.17431 0.96313 0.92217 0.84407 1.21643 0.99163 0.94467 0.99274 1.21128 0.98746 0.99654 0.92322 1.20962 1.01998 0.94297 0.99011 1.20787 0.97957 0.96853 0.95668 1.20825 1.05648 0.88667 0.95760 1.98403 1.80209 1.26015 1.98321 1.20735 0.94269 0.92817 0.84883 1.21979 1.00326 0.96735 0.98324 1.21448 0.95795 1.00159 0.97599 1.21523 0.95980 0.96956 1.01002 1.21481 1.00070 0.95613 0.98018 1.22022 0.95746 1.01619 0.98157 0.92572 0.94238 0.95505 0.74148 0.82295 0.85695 0.85740 0.85194 0.89739 0.90212 0.92535 0.92256 0.92423 0.92743 0.91965 0.92389 0.92472 0.92000 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.24 13.29 55.43 0.74 -23.51 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -13.72 9.39 -34.44 -0.32 -14.05 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.24 5.56 5.08 -5.19 -0.03 5.54 16 10 N -0.60 -12.35 2.41 -173.17 -0.42 -12.76 16 11 C 0.71 14.53 7.55 -86.93 -0.66 13.87 16 12 O -0.60 -12.19 9.67 5.28 0.05 -12.14 16 13 N -0.68 -13.17 5.00 -14.20 -0.07 -13.24 16 14 C 0.20 3.44 6.40 -83.64 -0.54 2.91 16 15 C -0.12 -2.00 8.77 -39.40 -0.35 -2.35 16 16 C -0.10 -1.29 10.04 -39.60 -0.40 -1.69 16 17 C -0.14 -1.71 10.04 -39.55 -0.40 -2.11 16 18 C -0.09 -1.25 9.82 -39.58 -0.39 -1.64 16 19 C -0.08 -1.28 6.34 -39.33 -0.25 -1.53 16 20 Cl -0.06 -1.00 27.87 -51.86 -1.45 -2.45 16 21 C 0.18 3.18 2.54 -67.93 -0.17 3.01 16 22 C -0.14 -2.12 5.15 -26.73 -0.14 -2.26 16 23 C -0.11 -1.44 5.92 -26.73 -0.16 -1.60 16 24 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 25 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 26 C -0.14 -2.39 5.11 -26.73 -0.14 -2.52 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.04 0.96 7.93 -51.93 -0.41 0.55 16 29 H 0.03 0.65 6.08 -51.93 -0.32 0.33 16 30 H 0.42 8.38 5.57 -40.82 -0.23 8.16 16 31 H 0.16 2.73 5.76 -52.49 -0.30 2.42 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.08 1.55 7.80 -51.93 -0.41 1.14 16 36 H 0.08 1.37 6.46 -51.93 -0.34 1.03 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.09 1.71 5.89 -51.93 -0.31 1.40 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -27.23 369.46 -11.44 -38.67 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.50 Total: 10.14 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -4.34 Total: -6.13 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.25 Total: -49.51 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.05 Total: -12.14 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.45 Total: -2.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.23 -11.44 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016450346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.217 kcal (2) G-P(sol) polarization free energy of solvation -27.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds