Wall clock time and date at job start Tue Mar 31 2020 05:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00108 * 2 1 4 4 H 1.48504 * 109.46957 * 240.00245 * 3 2 1 5 5 H 1.48504 * 109.46966 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47232 * 119.99720 * 3 2 1 7 7 C 1.37877 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99887 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46960 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00641 * 89.99728 * 10 9 7 12 12 S 1.71200 * 119.99541 * 5.14606 * 11 10 9 13 13 N 1.34774 * 120.00545 * 185.14498 * 11 10 9 14 14 C 1.40017 * 120.00365 * 184.79774 * 13 11 10 15 15 C 1.38817 * 120.07696 * 311.18108 * 14 13 11 16 16 C 1.38146 * 119.95337 * 179.97438 * 15 14 13 17 17 C 1.38277 * 120.11201 * 359.97438 * 16 15 14 18 18 C 1.38270 * 120.15510 * 0.02650 * 17 16 15 19 19 C 1.38299 * 120.05021 * 359.97438 * 18 17 16 20 20 F 1.35100 * 120.05735 * 179.97438 * 19 18 17 21 21 C 1.46503 * 119.99766 * 269.99913 * 10 9 7 22 22 C 1.53008 * 109.46829 * 234.29343 * 21 10 9 23 23 C 1.53006 * 109.46974 * 179.97438 * 22 21 10 24 24 C 1.52998 * 109.47067 * 59.99902 * 23 22 21 25 25 C 1.53003 * 109.47528 * 300.00117 * 24 23 22 26 26 C 1.53002 * 109.47221 * 114.29579 * 21 10 9 27 27 H 0.97003 * 120.00147 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47172 * 59.99821 * 9 7 2 29 29 H 1.09000 * 109.47038 * 299.99752 * 9 7 2 30 30 H 0.97000 * 119.99492 * 4.79863 * 13 11 10 31 31 H 1.08002 * 120.02311 * 359.96104 * 15 14 13 32 32 H 1.08000 * 119.94199 * 180.02562 * 16 15 14 33 33 H 1.08003 * 119.92199 * 180.02562 * 17 16 15 34 34 H 1.08010 * 119.97763 * 179.72244 * 18 17 16 35 35 H 1.08997 * 109.47359 * 354.29126 * 21 10 9 36 36 H 1.08993 * 109.47181 * 299.99544 * 22 21 10 37 37 H 1.08997 * 109.47373 * 60.00088 * 22 21 10 38 38 H 1.09002 * 109.46735 * 299.99924 * 23 22 21 39 39 H 1.08995 * 109.46994 * 180.02562 * 23 22 21 40 40 H 1.08995 * 109.46888 * 180.02562 * 24 23 22 41 41 H 1.09006 * 109.47041 * 59.99954 * 24 23 22 42 42 H 1.09002 * 109.47034 * 300.00443 * 25 24 23 43 43 H 1.08997 * 109.47598 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.46957 * 299.99508 * 26 21 10 45 45 H 1.08992 * 109.47166 * 60.00248 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.6401 -4.1244 1.1695 12 16 1.9851 -3.5635 2.6484 13 7 3.5928 -5.0777 1.1730 14 6 3.9754 -5.6808 2.3773 15 6 4.2786 -4.8971 3.4822 16 6 4.6553 -5.4949 4.6694 17 6 4.7304 -6.8727 4.7591 18 6 4.4293 -7.6577 3.6613 19 6 4.0515 -7.0662 2.4696 20 9 3.7579 -7.8330 1.3968 21 6 2.6799 -4.1700 -1.2664 22 6 2.4291 -5.6792 -1.2866 23 6 2.9266 -6.2612 -2.6113 24 6 4.4256 -5.9913 -2.7559 25 6 4.6765 -4.4821 -2.7357 26 6 4.1791 -3.9002 -1.4103 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 4.0134 -5.3459 0.3411 31 1 4.2203 -3.8209 3.4138 32 1 4.8908 -4.8851 5.5290 33 1 5.0248 -7.3368 5.6888 34 1 4.4932 -8.7335 3.7333 35 1 2.1454 -3.7018 -2.0929 36 1 2.9636 -6.1474 -0.4601 37 1 1.3611 -5.8715 -1.1840 38 1 2.3917 -5.7928 -3.4375 39 1 2.7475 -7.3362 -2.6259 40 1 4.7799 -6.4055 -3.6998 41 1 4.9605 -6.4596 -1.9296 42 1 4.1416 -4.0138 -3.5619 43 1 5.7445 -4.2899 -2.8382 44 1 4.3577 -2.8250 -1.3960 45 1 4.7135 -4.3685 -0.5839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016450405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:52 Heat of formation + Delta-G solvation = 7.859893 kcal Electronic energy + Delta-G solvation = -27986.177653 eV Core-core repulsion = 24237.471747 eV Total energy + Delta-G solvation = -3748.705905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.89440 -40.62476 -38.91514 -36.74732 -35.16310 -32.67038 -30.92119 -30.52360 -30.09924 -29.65330 -27.09226 -24.39449 -23.05041 -22.85606 -22.72521 -22.11529 -20.94340 -20.24278 -18.11965 -17.26630 -17.06845 -16.53226 -16.19322 -15.70727 -15.46068 -15.11045 -14.75702 -14.60350 -14.43115 -14.22935 -14.07282 -13.92276 -13.67956 -13.19703 -12.75861 -12.51428 -12.35851 -12.28129 -11.99876 -11.77075 -11.52022 -11.41666 -11.30946 -11.25538 -10.99601 -10.82854 -10.76298 -10.43487 -10.39097 -10.22075 -10.05151 -9.79934 -9.09987 -8.75250 -8.48471 -8.04184 -6.98618 -6.33254 -6.09447 -4.14320 1.08861 1.35200 2.10284 2.58512 3.20472 3.28861 3.34643 3.37805 3.59058 3.73029 4.24853 4.39926 4.54451 4.62666 4.77746 4.80612 4.93425 5.04486 5.05567 5.25146 5.25777 5.27505 5.28922 5.33760 5.42898 5.52980 5.59609 5.64063 5.83956 5.89763 5.92729 5.93999 6.02591 6.09319 6.18154 6.22448 6.26669 6.35478 6.40611 6.54528 6.67333 7.03572 7.09082 7.41238 7.52294 7.83759 7.89514 8.08475 8.83818 9.48692 10.98776 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.005104 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.197115 B = 5484.262904 C = 7323.151757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.234 3.766 10 N -0.526 5.526 11 C 0.560 3.440 12 S -0.636 6.636 13 N -0.657 5.657 14 C 0.108 3.892 15 C -0.038 4.038 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.158 4.158 19 C 0.084 3.916 20 F -0.142 7.142 21 C 0.120 3.880 22 C -0.149 4.149 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.116 4.116 26 C -0.139 4.139 27 H 0.265 0.735 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.408 0.592 31 H 0.155 0.845 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.502 -15.513 -1.858 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.074 0.926 9 C 0.116 3.884 10 N -0.228 5.228 11 C 0.203 3.797 12 S -0.500 6.500 13 N -0.294 5.294 14 C 0.013 3.987 15 C -0.061 4.061 16 C -0.147 4.147 17 C -0.112 4.112 18 C -0.178 4.178 19 C 0.062 3.938 20 F -0.121 7.121 21 C 0.014 3.986 22 C -0.188 4.188 23 C -0.151 4.151 24 C -0.161 4.161 25 C -0.154 4.154 26 C -0.178 4.178 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.255 0.745 31 H 0.173 0.827 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.729 -14.909 -1.113 18.402 hybrid contribution 0.779 0.418 -1.370 1.631 sum 11.508 -14.490 -2.483 18.670 Atomic orbital electron populations 1.69911 1.05930 1.27283 1.49517 1.24822 0.94828 0.98974 0.94768 0.86549 0.79538 0.82725 0.78569 1.20446 1.21116 1.20005 1.21069 0.92949 0.89819 1.52301 0.92609 1.20086 0.87051 0.80504 1.00751 1.48012 1.41207 1.32271 1.01351 1.22263 0.82604 0.82021 0.92814 1.93083 1.69664 1.73081 1.14198 1.43061 1.38066 1.39101 1.09214 1.17430 1.03633 0.89242 0.88420 1.21520 0.91247 1.02232 0.91096 1.21066 1.01143 0.94580 0.97941 1.20987 0.98738 0.93737 0.97725 1.20828 1.04708 1.00629 0.91623 1.17644 1.04504 0.86872 0.84822 1.91453 1.91330 1.75146 1.54151 1.21580 0.95527 0.93574 0.87963 1.22269 1.02815 0.94827 0.98910 1.21471 0.95930 1.00764 0.96940 1.21614 0.96301 0.96329 1.01884 1.21525 1.01218 0.95330 0.97304 1.22171 0.94689 1.03225 0.97703 0.92518 0.94371 0.89990 0.74525 0.82731 0.85095 0.85274 0.84881 0.87270 0.91099 0.90670 0.91313 0.91479 0.91561 0.92210 0.91120 0.91480 0.89546 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 2 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -13.95 9.39 -34.44 -0.32 -14.28 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.23 5.78 4.98 -5.19 -0.03 5.76 16 10 N -0.53 -10.52 2.41 -169.48 -0.41 -10.93 16 11 C 0.56 11.34 6.96 -86.92 -0.60 10.73 16 12 S -0.64 -15.29 24.48 -107.50 -2.63 -17.92 16 13 N -0.66 -10.84 3.53 -11.35 -0.04 -10.88 16 14 C 0.11 1.71 5.85 -83.60 -0.49 1.22 16 15 C -0.04 -0.59 7.89 -39.40 -0.31 -0.90 16 16 C -0.13 -1.57 10.04 -39.60 -0.40 -1.97 16 17 C -0.09 -0.99 10.04 -39.56 -0.40 -1.39 16 18 C -0.16 -1.82 10.02 -39.55 -0.40 -2.22 16 19 C 0.08 1.18 7.31 -39.26 -0.29 0.89 16 20 F -0.14 -2.00 16.91 2.25 0.04 -1.96 16 21 C 0.12 1.85 2.55 -67.92 -0.17 1.68 16 22 C -0.15 -1.96 4.95 -26.72 -0.13 -2.09 16 23 C -0.11 -1.14 5.92 -26.73 -0.16 -1.30 16 24 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 25 C -0.12 -1.20 5.93 -26.70 -0.16 -1.35 16 26 C -0.14 -1.88 5.12 -26.70 -0.14 -2.02 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 28 H 0.04 0.96 7.88 -51.93 -0.41 0.55 16 29 H 0.08 2.31 6.46 -51.93 -0.34 1.98 16 30 H 0.41 5.90 3.36 -40.82 -0.14 5.76 16 31 H 0.16 2.76 6.45 -52.01 -0.34 2.43 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.11 1.71 7.77 -51.93 -0.40 1.31 16 36 H 0.07 0.97 4.78 -51.93 -0.25 0.72 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.06 0.77 5.27 -51.93 -0.27 0.50 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -31.34 367.19 -12.38 -43.71 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.34 Total: 7.68 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -4.25 Total: -6.73 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.29 Total: -46.68 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -15.29 SS G_CDS: -2.63 Total: -17.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.34 -12.38 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016450405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.574 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds