Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86796 * 120.00414 * 2 1 4 4 H 1.48506 * 109.47045 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 299.99819 * 3 2 1 6 6 H 1.48501 * 109.47239 * 59.99754 * 3 2 1 7 7 C 1.39915 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99607 * 175.56131 * 7 2 1 9 9 C 1.41153 * 119.99702 * 355.56132 * 7 2 1 10 10 C 1.40865 * 120.16115 * 214.77641 * 9 7 2 11 11 C 1.36373 * 119.82879 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.17022 * 0.02562 * 11 10 9 13 13 N 1.39236 * 119.83440 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00082 * 35.29263 * 13 12 11 15 15 O 1.21279 * 119.99880 * 355.70347 * 14 13 12 16 16 C 1.50699 * 120.00036 * 175.70569 * 14 13 12 17 17 O 1.42903 * 109.47006 * 180.02562 * 16 14 13 18 18 C 1.42894 * 113.99821 * 180.02562 * 17 16 14 19 19 C 1.54351 * 110.82308 * 262.96803 * 18 17 16 20 20 C 1.51363 * 105.17285 * 215.42777 * 19 18 17 21 21 C 1.38498 * 130.39179 * 197.19260 * 20 19 18 22 22 C 1.38099 * 120.21896 * 180.02562 * 21 20 19 23 23 C 1.38261 * 119.93272 * 359.97438 * 22 21 20 24 24 C 1.38103 * 119.93364 * 0.02562 * 23 22 21 25 25 C 1.38215 * 109.75994 * 17.18783 * 20 19 18 26 26 C 1.51365 * 109.75920 * 359.97438 * 25 20 19 27 27 C 1.39484 * 120.32808 * 0.25844 * 12 11 10 28 28 C 1.36373 * 120.16908 * 359.47982 * 27 12 11 29 29 H 0.96997 * 119.99490 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.08922 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.91520 * 179.97438 * 11 10 9 32 32 H 0.97004 * 120.00111 * 215.29059 * 13 12 11 33 33 H 1.09001 * 109.47067 * 60.00401 * 16 14 13 34 34 H 1.09001 * 109.47133 * 300.00192 * 16 14 13 35 35 H 1.09007 * 110.73184 * 26.59144 * 18 17 16 36 36 H 1.08994 * 110.30158 * 334.35810 * 19 18 17 37 37 H 1.09000 * 110.30239 * 96.50292 * 19 18 17 38 38 H 1.08001 * 119.89052 * 359.97438 * 21 20 19 39 39 H 1.07997 * 120.03771 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.03318 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.88878 * 180.02562 * 24 23 22 42 42 H 1.08996 * 110.30677 * 223.88516 * 26 25 20 43 43 H 1.09006 * 110.38906 * 101.77535 * 26 25 20 44 44 H 1.07995 * 119.91380 * 179.74219 * 27 12 11 45 45 H 1.08003 * 120.08675 * 180.26016 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7029 1.3461 0.0006 5 1 1.8841 2.3963 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0082 -1.2118 0.0005 8 1 3.0858 -1.2132 -0.0718 9 6 1.3055 -2.4322 0.0957 10 6 1.8647 -3.5180 0.7975 11 6 1.1801 -4.6942 0.8847 12 6 -0.0706 -4.8239 0.2808 13 7 -0.7632 -6.0281 0.3738 14 6 -0.6815 -6.7675 1.4977 15 8 0.0557 -6.4239 2.3973 16 6 -1.5062 -8.0211 1.6366 17 8 -1.2473 -8.6234 2.9064 18 6 -1.9830 -9.8259 3.1400 19 6 -3.2540 -9.5396 3.9677 20 6 -3.4267 -10.7500 4.8599 21 6 -4.5316 -11.1925 5.5682 22 6 -4.4547 -12.3428 6.3285 23 6 -3.2715 -13.0560 6.3830 24 6 -2.1687 -12.6164 5.6775 25 6 -2.2439 -11.4630 4.9143 26 6 -1.1955 -10.7809 4.0618 27 6 -0.6281 -3.7550 -0.4208 28 6 0.0423 -2.5709 -0.5121 29 1 -0.4849 0.8401 -0.0004 30 1 2.8331 -3.4194 1.2653 31 1 1.6077 -5.5278 1.4221 32 1 -1.3046 -6.3350 -0.3703 33 1 -1.2424 -8.7194 0.8423 34 1 -2.5643 -7.7699 1.5629 35 1 -2.2322 -10.3150 2.1982 36 1 -3.1185 -8.6416 4.5703 37 1 -4.1162 -9.4282 3.3103 38 1 -5.4560 -10.6357 5.5265 39 1 -5.3179 -12.6850 6.8800 40 1 -3.2095 -13.9556 6.9774 41 1 -1.2450 -13.1743 5.7202 42 1 -0.6524 -11.5170 3.4693 43 1 -0.5048 -10.2166 4.6885 44 1 -1.5950 -3.8641 -0.8893 45 1 -0.3925 -1.7428 -1.0522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017031317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = -31.177861 kcal Electronic energy + Delta-G solvation = -26672.851800 eV Core-core repulsion = 22812.750782 eV Total energy + Delta-G solvation = -3860.101017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.52358 -39.69371 -38.04475 -37.05601 -34.83645 -34.38243 -32.93920 -31.72873 -29.77427 -29.47916 -28.68220 -27.64614 -27.27811 -24.65140 -22.72095 -21.68944 -21.24084 -21.15370 -20.83778 -19.70412 -17.44449 -17.36501 -17.00933 -16.52966 -16.28141 -15.92659 -15.60655 -15.18399 -15.11502 -14.39683 -14.10155 -13.85671 -13.81846 -13.44704 -13.29536 -13.10235 -12.91099 -12.76836 -12.58562 -12.40395 -12.11853 -11.80838 -11.68987 -11.52206 -11.37642 -11.16130 -11.15031 -11.08232 -10.95159 -10.72977 -9.99516 -9.82300 -9.48637 -9.43661 -9.10826 -9.10341 -8.87147 -8.79840 -7.55022 -6.87220 -6.62085 -4.34450 1.04993 1.08857 2.52667 2.94104 3.00752 3.08690 3.10491 3.15866 3.35171 3.45498 3.97418 3.99682 4.10572 4.29535 4.64125 4.69436 4.69996 4.76388 4.79337 4.91498 5.06140 5.07651 5.14233 5.22732 5.26762 5.46030 5.49293 5.51101 5.63574 5.65923 5.83640 5.87061 6.12433 6.18269 6.20681 6.34371 6.44557 6.69706 6.73363 6.84687 6.99140 7.07038 7.19884 7.29962 7.63774 7.73499 7.87443 8.06597 8.23940 8.31547 8.62232 8.73388 8.92843 8.99661 10.29141 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.001670 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.141257 B =16766.984008 C =16831.511125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.099 3.901 10 C -0.205 4.205 11 C -0.086 4.086 12 C 0.004 3.996 13 N -0.651 5.651 14 C 0.497 3.503 15 O -0.509 6.509 16 C 0.046 3.954 17 O -0.346 6.346 18 C 0.088 3.912 19 C -0.107 4.107 20 C -0.092 4.092 21 C -0.107 4.107 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.106 4.106 25 C -0.093 4.093 26 C -0.081 4.081 27 C -0.120 4.120 28 C -0.141 4.141 29 H 0.277 0.723 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.396 0.604 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.959 -22.123 4.975 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.097 3.903 10 C -0.225 4.225 11 C -0.105 4.105 12 C -0.088 4.088 13 N -0.295 5.295 14 C 0.283 3.717 15 O -0.383 6.383 16 C -0.035 4.035 17 O -0.263 6.263 18 C 0.030 3.970 19 C -0.144 4.144 20 C -0.092 4.092 21 C -0.125 4.125 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.124 4.124 25 C -0.093 4.093 26 C -0.118 4.118 27 C -0.140 4.140 28 C -0.161 4.161 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.229 0.771 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.496 -21.639 5.791 24.330 hybrid contribution -0.361 0.504 -0.371 0.723 sum -9.857 -21.135 5.419 23.942 Atomic orbital electron populations 1.69769 1.07295 1.28605 1.38257 1.25887 0.94946 1.01194 0.92553 0.86144 0.80611 0.80823 0.78380 1.18567 1.20003 1.19992 1.19545 0.94789 0.90205 1.44577 0.90528 1.17743 0.92309 0.92034 0.88230 1.20815 1.01252 0.94929 1.05469 1.20416 0.92776 0.97928 0.99427 1.17240 0.94177 0.85692 1.11719 1.42851 1.49275 1.21492 1.15923 1.20138 0.83902 0.84978 0.82725 1.90722 1.37963 1.70015 1.39642 1.22289 0.99478 0.94390 0.87300 1.88089 1.65588 1.38593 1.34076 1.22726 0.90931 0.85652 0.97740 1.21596 0.98409 0.96792 0.97621 1.20462 0.94021 0.96487 0.98222 1.20641 0.97840 0.96764 0.97246 1.21043 0.98065 0.95455 0.99366 1.21041 0.93082 1.00102 0.99725 1.20625 0.98867 0.95766 0.97136 1.20469 0.95476 0.95182 0.98170 1.21063 0.96750 0.97000 0.96993 1.20308 0.98354 0.93108 1.02264 1.21187 0.97301 0.95521 1.02112 0.91200 0.88539 0.87436 0.77093 0.90444 0.90395 0.90396 0.88626 0.90396 0.86176 0.85898 0.85879 0.86104 0.89974 0.88452 0.89044 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.16 10.60 55.55 0.59 -20.57 16 2 C 0.07 1.75 5.42 -17.33 -0.09 1.66 16 3 Si 0.92 19.08 29.56 -169.99 -5.03 14.05 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.46 -12.33 9.02 -37.85 -0.34 -12.67 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.56 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 10 C -0.20 -5.23 9.74 -39.26 -0.38 -5.61 16 11 C -0.09 -2.07 8.61 -39.79 -0.34 -2.41 16 12 C 0.00 0.08 6.31 -83.57 -0.53 -0.44 16 13 N -0.65 -11.09 5.30 -9.74 -0.05 -11.14 16 14 C 0.50 8.65 7.74 -10.99 -0.09 8.56 16 15 O -0.51 -11.44 13.92 -14.35 -0.20 -11.64 16 16 C 0.05 0.54 6.25 36.01 0.23 0.77 16 17 O -0.35 -4.69 9.61 -55.14 -0.53 -5.22 16 18 C 0.09 0.87 3.57 -25.33 -0.09 0.78 16 19 C -0.11 -1.02 6.52 -26.85 -0.18 -1.20 16 20 C -0.09 -0.90 6.14 -104.21 -0.64 -1.54 16 21 C -0.11 -0.93 10.04 -39.54 -0.40 -1.33 16 22 C -0.12 -0.95 10.05 -39.62 -0.40 -1.34 16 23 C -0.12 -0.94 10.05 -39.62 -0.40 -1.34 16 24 C -0.11 -0.91 10.04 -39.53 -0.40 -1.31 16 25 C -0.09 -0.91 6.14 -104.21 -0.64 -1.55 16 26 C -0.08 -0.78 6.52 -26.86 -0.18 -0.96 16 27 C -0.12 -2.71 9.90 -39.79 -0.39 -3.11 16 28 C -0.14 -3.62 8.62 -39.26 -0.34 -3.96 16 29 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 30 H 0.10 2.35 8.06 -52.48 -0.42 1.92 16 31 H 0.11 2.59 6.22 -52.48 -0.33 2.26 16 32 H 0.40 4.99 8.82 -40.82 -0.36 4.63 16 33 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.61 7.83 -51.93 -0.41 0.20 16 36 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 44 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 45 H 0.13 3.48 6.13 -52.48 -0.32 3.16 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -32.53 378.76 -11.72 -44.25 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.03 Total: 9.48 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -6.18 Total: -24.91 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.54 Total: -31.71 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.73 Total: -16.86 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.53 -11.72 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017031317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.072 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds