Wall clock time and date at job start Tue Mar 31 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86808 * 119.99978 * 2 1 4 4 H 1.48496 * 109.46968 * 240.00376 * 3 2 1 5 5 H 1.48501 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46738 * 120.00281 * 3 2 1 7 7 C 1.38621 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00330 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.35790 * 117.00218 * 174.92614 * 9 7 2 11 11 C 1.38895 * 119.99401 * 185.18734 * 10 9 7 12 12 C 1.38012 * 120.00662 * 179.72363 * 11 10 9 13 13 C 1.38953 * 119.99104 * 0.56927 * 12 11 10 14 14 N 1.39780 * 120.00372 * 179.72738 * 13 12 11 15 15 S 1.65606 * 119.99891 * 254.81699 * 14 13 12 16 16 O 1.42100 * 106.40009 * 176.56637 * 15 14 13 17 17 O 1.42097 * 106.40261 * 309.49043 * 15 14 13 18 18 C 1.76203 * 107.21530 * 63.02942 * 15 14 13 19 19 C 1.38238 * 119.97614 * 274.52493 * 18 15 14 20 20 C 1.38200 * 120.02640 * 179.72715 * 19 18 15 21 21 C 1.38459 * 119.97277 * 0.56808 * 20 19 18 22 22 F 1.35099 * 120.02244 * 179.68257 * 21 20 19 23 23 C 1.38459 * 119.94727 * 359.70734 * 21 20 19 24 24 C 1.38200 * 119.97479 * 359.97438 * 23 21 20 25 25 C 1.38948 * 119.99058 * 359.70307 * 13 12 11 26 26 C 1.38008 * 119.99089 * 0.02562 * 25 13 12 27 27 H 0.97002 * 120.00499 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99819 * 359.97438 * 11 10 9 29 29 H 1.07999 * 120.00727 * 180.27722 * 12 11 10 30 30 H 0.97004 * 120.00591 * 74.81943 * 14 13 12 31 31 H 1.08002 * 119.98776 * 359.97438 * 19 18 15 32 32 H 1.08002 * 120.01184 * 180.25401 * 20 19 18 33 33 H 1.08002 * 120.01225 * 179.97438 * 23 21 20 34 34 H 1.07995 * 119.98302 * 180.02562 * 24 23 21 35 35 H 1.07996 * 120.00418 * 180.02562 * 25 13 12 36 36 H 1.07998 * 119.99993 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6964 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3680 -0.0005 10 6 2.0703 -3.5044 -0.1081 11 6 1.4351 -4.7343 -0.2230 12 6 2.1823 -5.8889 -0.3381 13 6 3.5701 -5.8221 -0.3270 14 7 4.3271 -6.9920 -0.4378 15 16 5.0867 -7.6160 0.8949 16 8 5.6950 -8.8307 0.4780 17 8 5.8126 -6.5445 1.4815 18 6 3.8324 -8.0587 2.0506 19 6 3.3307 -7.1105 2.9224 20 6 2.3429 -7.4552 3.8254 21 6 1.8641 -8.7538 3.8646 22 9 0.9031 -9.0934 4.7512 23 6 2.3715 -9.7041 2.9947 24 6 3.3546 -9.3554 2.0881 25 6 4.2054 -4.5923 -0.2063 26 6 3.4577 -3.4375 -0.0969 27 1 -0.4851 0.8400 0.0004 28 1 0.3563 -4.7866 -0.2265 29 1 1.6884 -6.8448 -0.4320 30 1 4.4076 -7.4383 -1.2953 31 1 3.7080 -6.0989 2.8952 32 1 1.9482 -6.7132 4.5036 33 1 1.9991 -10.7174 3.0246 34 1 3.7501 -10.0964 1.4093 35 1 5.2840 -4.5401 -0.1981 36 1 3.9512 -2.4815 -0.0027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018895478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:17 Heat of formation + Delta-G solvation = -87.426720 kcal Electronic energy + Delta-G solvation = -25992.614272 eV Core-core repulsion = 21870.391578 eV Total energy + Delta-G solvation = -4122.222694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.30587 -39.30778 -39.12587 -37.39538 -36.99663 -35.84661 -33.92142 -32.28721 -31.49024 -31.01713 -30.36204 -27.63965 -25.39115 -23.44592 -23.37579 -22.15743 -21.51637 -19.61038 -18.36725 -18.22355 -17.77932 -17.67238 -17.16646 -16.77112 -16.34625 -15.95222 -15.08987 -14.89968 -14.73359 -14.59818 -13.91369 -13.81355 -13.75030 -13.59790 -13.55059 -13.12747 -12.90853 -12.77835 -12.57621 -12.10998 -12.01867 -11.88957 -11.50303 -11.43484 -11.33810 -11.19429 -11.00905 -10.81994 -10.55630 -9.95718 -9.45749 -9.41934 -9.32120 -8.94205 -8.39498 -7.36528 -6.59414 -4.17393 0.23930 0.53024 0.90954 2.01209 2.06314 2.86908 3.07272 3.07782 3.10893 3.19907 3.71500 3.83730 3.86164 4.20084 4.33479 4.51718 4.55434 4.90800 4.94465 5.08500 5.10484 5.36424 5.54944 5.55723 5.59345 5.61791 5.69965 5.80397 5.82011 6.03454 6.19226 6.47867 6.48583 6.68969 6.76328 7.01978 7.08573 7.18907 7.31149 7.66557 7.85001 8.85629 9.51318 10.57376 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.003358 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.130258 B = 8337.037149 C = 9511.416577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.096 0.904 9 O -0.167 6.167 10 C 0.161 3.839 11 C -0.189 4.189 12 C -0.062 4.062 13 C 0.003 3.997 14 N -1.042 6.042 15 S 2.689 3.311 16 O -0.968 6.968 17 O -0.948 6.948 18 C -0.684 4.684 19 C 0.023 3.977 20 C -0.173 4.173 21 C 0.153 3.847 22 F -0.132 7.132 23 C -0.180 4.180 24 C 0.007 3.993 25 C -0.049 4.049 26 C -0.230 4.230 27 H 0.273 0.727 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.415 0.585 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.120 0.880 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -15.616 3.150 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.113 0.887 9 O -0.069 6.069 10 C 0.106 3.894 11 C -0.209 4.209 12 C -0.083 4.083 13 C -0.091 4.091 14 N -0.797 5.797 15 S 2.779 3.221 16 O -0.959 6.959 17 O -0.938 6.938 18 C -0.771 4.771 19 C 0.004 3.996 20 C -0.192 4.192 21 C 0.133 3.867 22 F -0.111 7.111 23 C -0.200 4.200 24 C -0.012 4.012 25 C -0.070 4.070 26 C -0.250 4.250 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.134 0.866 30 H 0.253 0.747 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.138 0.862 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.598 -15.453 3.509 16.806 hybrid contribution -0.546 0.444 0.092 0.710 sum 5.052 -15.009 3.601 16.240 Atomic orbital electron populations 1.70030 1.06049 1.28168 1.44752 1.25334 0.95869 0.99018 0.96140 0.85752 0.78752 0.79431 0.79408 1.19312 1.20195 1.19297 1.21360 0.92005 0.80623 1.52977 0.88689 1.83979 1.34597 1.11615 1.76723 1.19475 0.90310 0.88038 0.91621 1.20087 0.99700 0.89868 1.11219 1.20803 0.92393 0.97316 0.97795 1.16719 0.89533 0.84492 1.18403 1.52617 1.68162 1.34924 1.23990 1.02359 0.73521 0.73131 0.73046 1.93560 1.74279 1.46306 1.81721 1.93601 1.68005 1.54843 1.77359 1.31041 1.24337 1.01989 1.19687 1.20887 0.90543 0.98976 0.89224 1.21334 0.99989 0.95320 1.02601 1.18006 0.86717 0.93918 0.88069 1.91541 1.60698 1.92858 1.65974 1.21226 1.00431 1.00191 0.98112 1.20779 0.91487 0.94113 0.94856 1.21074 0.99430 0.90965 0.95502 1.21099 0.93540 0.98886 1.11465 0.91706 0.86027 0.86615 0.74729 0.83034 0.83564 0.83890 0.83278 0.86160 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.84 13.67 55.48 0.76 -23.08 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.47 29.55 -169.99 -5.02 14.44 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.39 -10.30 9.48 30.87 0.29 -10.01 16 8 H 0.10 2.28 5.20 -52.49 -0.27 2.00 16 9 O -0.17 -4.42 9.76 -0.03 0.00 -4.42 16 10 C 0.16 3.54 6.65 -39.09 -0.26 3.28 16 11 C -0.19 -3.53 9.98 -39.42 -0.39 -3.92 16 12 C -0.06 -0.96 9.96 -39.40 -0.39 -1.35 16 13 C 0.00 0.05 5.79 -83.71 -0.48 -0.43 16 14 N -1.04 -12.78 5.70 32.45 0.18 -12.59 16 15 S 2.69 34.90 5.71 -107.50 -0.61 34.28 16 16 O -0.97 -13.63 17.17 -57.17 -0.98 -14.61 16 17 O -0.95 -15.06 16.44 -57.17 -0.94 -16.00 16 18 C -0.68 -8.22 5.86 -39.58 -0.23 -8.45 16 19 C 0.02 0.28 9.52 -39.60 -0.38 -0.09 16 20 C -0.17 -1.98 10.03 -39.51 -0.40 -2.37 16 21 C 0.15 1.69 7.30 -39.42 -0.29 1.40 16 22 F -0.13 -1.49 17.27 2.25 0.04 -1.46 16 23 C -0.18 -1.76 10.03 -39.51 -0.40 -2.15 16 24 C 0.01 0.07 9.52 -39.59 -0.38 -0.31 16 25 C -0.05 -0.84 9.29 -39.40 -0.37 -1.20 16 26 C -0.23 -4.57 9.16 -39.42 -0.36 -4.93 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.42 4.02 8.96 -34.47 -0.31 3.71 16 31 H 0.15 1.89 7.72 -52.49 -0.41 1.49 16 32 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.15 1.24 7.52 -52.49 -0.39 0.84 16 35 H 0.12 1.92 7.91 -52.49 -0.42 1.50 16 36 H 0.13 2.66 5.63 -52.49 -0.30 2.36 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -31.52 338.14 -8.53 -40.04 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -2.92 Total: 7.86 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -4.13 Total: -29.56 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.94 Total: -35.67 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.92 Total: -35.03 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 16 Polarization: 34.90 SS G_CDS: -0.61 Total: 34.28 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.52 -8.53 -40.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018895478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.383 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds